BAC Information

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BAC

Clone NameB6Ng01-059B06
Chromosome3 (Build37)
Map Location 45,385,853 - 45,386,409
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059B06.bB6Ng01-059B06.g
ACCDH880474DH880475
length1,205954
definitionDH880474|Mus musculus domesticus DNA, BAC clone: B6Ng01-059B06, 5' end.DH880475|Mus musculus domesticus DNA, BAC clone: B6Ng01-059B06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtgctaataccatctgccttatgttttgtgggtctgtttgtgt
ttgtttttgtcttttgtctggtattattgttggtttgtttgcttgaaagg
ctcttaatatctacattgatttcattagtggttatagttcgatttagata
gtttatcttatcttgacttaactgtgataagtagtacctatcaagaaaat
tatccatctcttccatgttttccaatattatagatgatttttaaaataaa
ttagaccattcttattctctgaatttctttggtgtctattgttattttcc
tctcttctgatttctgattttgatattatatctctgtattttaattattc
tggataagtatttgtatatattgttgattttctcaaacaaccaactttat
gtgtcactgattcttttgtattgttctcatttccctattttattgatgtt
agctgtcagtttaattatttcttgatgtctactcctcttatgtgcagttc
tttttttttttttcctagagctttcctgtgtgctgtggtagtatgtgctt
tacaaaattagtgtccttgtgctaggggcacaggtatttagaactgaaat
atcatcttggcagatttttccttaaatgcgtatataatgtcttttactac
atgtttttgactaattttgattttaagtctaatttgatattgaaatgact
ataacaaattgcttcttagatatattttcttgctatatattctagaacta
tcctgatgtaatatatttctttgatattgaggtataatttttgtatgcat
cagggtggatcctgtttttgcattcattctgtattatgtctttttaatag
gcaattgataccatttacattgagagctatcatgatcaatgattgttaat
tcctctcactttgttatgttgttttgtgtgctgcttccggtcctgctggt
gatagggatgggtgtacttccttctttgttttgctggtgtgaagatgtaa
ttcctgctcttctggttagctacctcctctggagttcctttcggattttg
ttggacggaattggcttaaactctgattgctttctggaaccattcctcat
ggactgaaaaatgctagtctgggtctcgggctattcaactgcctgaatcc
atcaacgaaggtaagatccattgatgcttcgtagcttaactctcttgtgt
gataa
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacgttgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagagagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gtttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgatttttctcaaagaaccaactcctcgtttgggtaattcttt
gactagttcttcttgtttccacttggtggatttcacccctgagtttgatt
atttcctgcgtctactcctcttggggtgaatttgcttcctttttttctag
agcttttagatgtgttgtcaagctgctatatgtgcttctcttccgtttta
tctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45385853_45386409
seq2: B6Ng01-059B06.g_463_1021 (reverse)

seq1  AAGAAAAAACGGGAGAG-AGCACATACTAGCAGCTTGACAACACATCTAA  49
      |||| ||||||| |||| |||||||| |||||||||||||||||||||||
seq2  AAGATAAAACGGAAGAGAAGCACATA-TAGCAGCTTGACAACACATCTAA  49

seq1  AAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCA  98
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  AAGCTCTAGAAAAAAAGGAAGCAAATTCACCCCAAGAGGAGTAGAC-GCA  98

seq1  GGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAATAATCAAACTCAGGGGTGAAATCCACCAAGTGGAAACAAGAAGAA  148

seq1  CTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AAAATCAA  197
      ||| ||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CTAGTCAAAGAATTACCCAAACGAGGAGTTGGTTCTTTGAGAAAAATCAA  198

seq1  CAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAA  248

seq1  TCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT  298

seq1  GAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAAC  348

seq1  -AAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAG  396
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAG  398

seq1  GTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATC  448

seq1  CCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCC  498

seq1  CAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT  548

seq1  CTAACTCCAGT  557
      |||||||||||
seq2  CTAACTCCAGT  559