BAC Information

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BAC

Clone NameB6Ng01-059D07
Chromosome3 (Build37)6 (Build37)
Map Location 41,059,038 - 41,059,737119,452,618 - 119,453,764
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D07.bB6Ng01-059D07.g
ACCDH880553DH880554
length9841,127
definitionDH880553|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D07, 5' end.DH880554|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,038 - 41,059,737)(119,452,618 - 119,453,764)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtcct
ctatctgatttaggataggtaaaaatcctttccccatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcagtttca
tgaggttccatttgtcaattctcgatcttatagcacaagccattgctgtt
ctattcaggaatttttcccctgtgctcatatcttcgaggcttttccccac
tttctcctctatgagtttcagtgtctttggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccacaggatggttttagctcccttgtcaaagatcaaat
gaccataagtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgccgtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctctcctaggttttttgttattccagatg
aaattttaacttcttaagaacaaatgaacatcagaaagtgtgtttacaga
aagaatttataattaagagtggggttggtaaaatggctcagcacataaaa
gctcttgtctttagcctgtatacatgaattcaatccttgggacccacatg
gataaaggacagaacctactcctgcaggatgtcctctgcacttgggcaga
ttgtgtacatacatacatacatagagaatttttaaatcatttattttaac
acatgctacagtaatactcaccacctgtccattg
gaattcaaaaggcctattatgtaataaacagtgttttgatttggttaaaa
cattcctgtggatctggagatatgctcagtaaaatacctgccatgtaagt
gtaagagccccagacccacataaaaggaaaaaaaaaaaaaaaaaaaaaaa
agctgggcccagatagtcgaagacaaggcagggggaaccctaaaatttca
cttaaagagcccaaaaacaaaggtggagagaaatcatggaagggaaccta
ctgtttaaccccggcctccacacccatgtgcatctatgtacacataccac
acacaaatacgaaataaacacaaaattcctgtatttagacaggctcgtta
tttgcatgaacaaaacccgaatcagattgcaaagggacaaaaggaagatt
ttagggtggagcaatgtcctgtattttgattatagtggatgactttacaa
gggatgctatggtctgaaattaatttgtctctaaaaaaaaaaaatcgtac
cgaaacgtgatccctaatgtgagagagcaactaagatacctgttagaggt
ggcgtgatctttggatgtttgggtcgggaaggatctaccttatggagtga
ttaaagccaggctcatgggattaggctagttcccacagaggtgacttctg
gaaggactcaaaggacgtgggtgacaatctgggatccccagagcatagga
ctctactgagtttcccatgaggagacagaacttttaacggagactgaaaa
cacatcaggcaccatcttgcagcagaaaccttactggaaatctattaaaa
tctcagcatggtctcaaaagactctggtaatttctgtgtccctgccaagg
gaatcctgcatggggaggccagaggtcaacatcggcatcttattaacatt
tccatataagtatctaatggggtcttccagtgaaattggaactcactggc
tgccaaatggctggcccaggatctatagcctcttccctgcctggggccct
acacactggcactgagtatacctgtctgctcgagtggatctgaactcacc
ctcagagctgcctgctgtgggcaaatctttaccgcactggccatctctca
gtccaccaggaaatctttttgatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059038_41059737
seq2: B6Ng01-059D07.b_44_744 (reverse)

seq1  TTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGA  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCATCTGGAATAACAAAAAACCTAGGAGAGCAAAAACTCTTCTCAAGGA  50

seq1  TAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACA  100

seq1  GAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCA  150
      ||||||||||||||||||| ||||||||||||||||| |||||||||| |
seq2  GAGCAATTGTGATAAAAACGGCATGGTACTGGTATAGCGACAGACAAGTA  150

seq1  GACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGG  200
      |||||||||||||||||||||||| |||||| ||| |||||||| |||||
seq2  GACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACTTATGG  200

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACA  250
      ||| |||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TCATTTGATCTTTGACAAGGGAGCTAAAACCATCCTGTGGAAAAAAGACA  250

seq1  GCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAGAAGA  300

seq1  ATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  350

seq1  GATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  400
      ||||||||||| ||||||||||||| ||||||||||||| ||||||||||
seq2  GATCAAGGAACTCCACATAAAACCAAAGACACTGAAACTCATAGAGGAGA  400

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCAT  450
      |||||||||||||||| |||||||||  ||||||||||||||||||| ||
seq2  AAGTGGGGAAAAGCCTCGAAGATATGAGCACAGGGGAAAAATTCCTGAAT  450

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCT  500
      ||||||||||||||||||||| |||||| |||||| ||||||||| ||||
seq2  AGAACAGCAATGGCTTGTGCTATAAGATCGAGAATTGACAAATGGAACCT  500

seq1  CATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGAAACTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAA  550

seq1  AAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  599
      ||||| ||||||||||| |||||||||| |||||||||||||||||||||
seq2  AAAGGCCACCAACAGATGGGGAAAGGATTTTTACCTATCCTAAATCAGAT  600

seq1  AGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAG  649
      || ||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  AGAGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAG  650

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAAT  700

seq1  T  700
      |
seq2  T  701

seq1: chr6_119452618_119453764
seq2: B6Ng01-059D07.g_70_1196

seq1  GAATTCAAAAGGCCTATTATGTAATAAACAGTGTTTTGATTTGGTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGCCTATTATGTAATAAACAGTGTTTTGATTTGGTTAAAA  50

seq1  CATTCCTGTGGATCTGGAGATATGCTCAGTAAAATACCTGCCATGTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGTGGATCTGGAGATATGCTCAGTAAAATACCTGCCATGTAAGT  100

seq1  GTAAGAGCCCCAGACCCACATAAAAGGAAAAAAAAAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCCCCAGACCCACATAAAAGGAAAAAAAAAAAAAAAAAAAAAAA  150

seq1  AGCTGGGCCCAGATAGTCGAAGACAAGGCAGGGGGAACCCTAAAATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCCCAGATAGTCGAAGACAAGGCAGGGGGAACCCTAAAATTTCA  200

seq1  CTTAAAGAGCCCAAAAACAAAGGTGGAGAGAAATCATGGAAGGGAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGCCCAAAAACAAAGGTGGAGAGAAATCATGGAAGGGAACCTA  250

seq1  CTGTTTAACCCCGGCCTCCACACCCATGTGCATCTATGTACACATACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAACCCCGGCCTCCACACCCATGTGCATCTATGTACACATACCAC  300

seq1  ACACAAATACGAAATAAACACAAAATTCCTGTATTTAGACAGGCTCGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATACGAAATAAACACAAAATTCCTGTATTTAGACAGGCTCGTTA  350

seq1  TTTGCATGAACAAAACCCGAATCAGATTGCAAAGGGACAAAAGGAAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGAACAAAACCCGAATCAGATTGCAAAGGGACAAAAGGAAGATT  400

seq1  TTAGGGTGGAGCAATGTCCTGTATTTTGATTATAGTGGATGACTTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTGGAGCAATGTCCTGTATTTTGATTATAGTGGATGACTTTACAA  450

seq1  GGGATGCTATGGTCTGAAATTAATTTGTCTCTAAAAAAAAAAAATCGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTATGGTCTGAAATTAATTTGTCTCTAAAAAAAAAAAATCGTAC  500

seq1  CGAAACGTGATCCCTAATGTGAGAGAGCAACTAAGATACCTGTTAGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACGTGATCCCTAATGTGAGAGAGCAACTAAGATACCTGTTAGAGGT  550

seq1  GGCGTGATCTTTGGATGTTTGGGTCGGGAAGGATCTACCTTATGGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGATCTTTGGATGTTTGGGTCGGGAAGGATCTACCTTATGGAGTGA  600

seq1  TTAAAGCCAGGCTCATGGGATTAGGCTAGTTCCCACAGAGGTGACTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCAGGCTCATGGGATTAGGCTAGTTCCCACAGAGGTGACTTCTG  650

seq1  GAAGGACTCAAAGGACGTGGGTGACAATCTGGGATCCCCAGAGCATAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTCAAAGGACGTGGGTGACAATCTGGGATCCCCAGAGCATAGGA  700

seq1  CTCTACTGAGTTTCCCATGAGGAGACAGAACTTTTAACGGAGACTGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGAGTTTCCCATGAGGAGACAGAACTTTTAACGGAGACTGAAAA  750

seq1  CACATCAGGCACCATCTTGCAGCAGAAACCTTACTGGAAATCTATTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGGCACCATCTTGCAGCAGAAACCTTACTGGAAATCTATTAAAA  800

seq1  TCTCAGCATGGTCTCAAAAGACTCTGGTAATTTCTGTGTCCCTGCCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCATGGTCTCAAAAGACTCTGGTAATTTCTGTGTCCCTGCCAAGG  850

seq1  GAATCCTGCATGGGGAGGCCAGAGGTCAACATCGGCATCTTATTAACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGCATGGGGAGGCCAGAGGTCAACATCGGCATCTTATTAACATT  900

seq1  TCCATATTAGTTATCTAATGGGGTCTTCCAGTGAAATTGGAACTCACTGG  950
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  TCCATATAAG-TATCTAATGGGGTCTTCCAGTGAAATTGGAACTCACTGG  949

seq1  CTGGCCAAAATGGCTGGCCCAGGATCTATAG-CTCTTCCCTGCCTGGGGC  999
      |||  | |||||||||||||||||||||||| ||||||||||||||||||
seq2  CTG--CCAAATGGCTGGCCCAGGATCTATAGCCTCTTCCCTGCCTGGGGC  997

seq1  CCTACACACTGGCACTGGAGTTATAACCCTGTCCTGCTTCTAAGTGGGTT  1049
      |||||||||||||||| ||| ||||  ||||| |||||    ||| || |
seq2  CCTACACACTGGCACT-GAG-TATA--CCTGT-CTGCT--CGAGT-GGAT  1039

seq1  CTGGAAACTCACCCTCAGAGCTGCCTGCTTGTGTGGCAAATACTTTATCG  1099
      |||  ||||||||||||||||||||||| |||| ||||||| ||||| ||
seq2  CTG--AACTCACCCTCAGAGCTGCCTGC-TGTG-GGCAAAT-CTTTACCG  1084

seq1  -ACTGAGCTATCTCTCAGTCCACCAAGGGAATCTCTTTTTTGGATGCAG  1147
       |||| || ||||||||||||||| ||| ||||    |||| |||||||
seq2  CACTG-GCCATCTCTCAGTCCACC-AGGAAATC----TTTTTGATGCAG  1127