BAC Information

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BAC

Clone NameB6Ng01-059E02
Chromosome3 (Build37)
Map Location 130,510,298 - 130,628,194
singlet/doubletdoublet
Overlap geneLOC546811
Upstream geneRrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059E02.bB6Ng01-059E02.g
ACCDH880591DH880592
length1,044951
definitionDH880591|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E02, 5' end.DH880592|Mus musculus domesticus DNA, BAC clone: B6Ng01-059E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,510,298 - 130,511,352)(130,627,225 - 130,628,194)
sequence
gaattcctcggtttgtgttttctttattgcttctgtttccattttcaggt
cttgaacagttttactcatttccttcacttgtttgattgtatttttctgt
atttctttaagggatttattcatttcctgtctaaaggcctctatcatcct
cataaggtaagatttaaggtcattttcttgtgctttggctatgttgcagt
atccaaggctagttggaaagctgggctttggtgatgccatattgccctgg
ctgttgttaattatgttcttatgttggcctctgggcatctgggctttggg
attattataggtcgaggtgctgatttctgagttcatctttgttagatgag
tgttttaaacatgcttcttgccttggtttttgtttttgttttccctctgg
ttttctggcctgagtagcctgggattccgatgaacagcaagtcttcaggt
atagtgcaatgtttccaatgtgtttttgttctgttttgtttatttttatt
gtattttttgtggccagcatgacctctgggggtttgggtgctgatgttgc
ctctggggttcctagaacaggtgtggcctccaggaaagcacaggtcttct
gccaatgttggtggccagaatatagggcccaagtgatggggtgcagttac
gtctgttaggtgtgccgtaaggggacttggcagacatagggaataaggtg
gggtcttacctggggtccctggtgctgatgtggcctttgggaaagcagca
acatatagggaatttgagaccagcctggggtacaccaggtgttactgact
agaagagctaggatgtaagactggtctaaggtgagggtaactctctcttg
gaagtgtgatatcagagcaatgggctttatcaatatcactgttctcattt
atgcttggctctctttcttcccttacaaatctgtgtatgtgagcttctgg
atggtatctctcaaggggccctacagcttctgcttcacagaggctaaagc
cgcctcctagactcatggctacagaaagcacgagaagatggtag
gaattcagtgtcatgtggccaaattccctgtggtctggaaatgttccctg
taacacactgtgtctgccacggttgccagcttggtagctgcctcatgtga
caggaaggtccctgaggctggaagaaggcagagagctgaagagtaggccc
aagaatggaatgcctcccatccgcctggggctgtgggcatgctggctggc
tggctgccagacaggtacacgtttatactctgctgagggcagctcttccc
gatgatccgtcagtgctgtctgagtaacactcatgcgctgcattttatag
ttttctaaattataggatgccacagcgtaaacagagatctttgtcttctt
tacagccaggcagagactggtggagagaaagcacgtgagattctgatgct
cggggtggtaatgtcaaatcttattcacttaggcccaataaaatccagct
tcctgtcttatgtcgtcattacggatccataacagcgtcaccagctaaga
gagccacatgcattgtttatccctgagtttgaggttcgaggtgagctggg
ggagacctgggagagggttgaggatggagataaagttatgtctcgagcac
tgagctaaatttcagttcaggagagatgattagattccaggaaaacaggt
aattcggtccaaagttcctctgctactaaaggaaataagtggctctcaga
tgcctccagcgggaagagagcttgtcaaaggagggaacgaggtgcatttc
actgtcaagggccaggtctcagaatctcttcccagtgggatggaactacg
gacactctcaacggcaaaatggacacacactgccttgtaaaggtgctttc
caaattctttccataatagttccaattctttgtcgataacaatgtgttga
ttttaacatctgatgggtggatttggataaaagaaacagagcatgagcta
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130510298_130511352
seq2: B6Ng01-059E02.b_47_1090

seq1  GAATTCCTCGGTTTGTGTTTTCTTTATTGCTTCTGTTTCCATTTTCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGTTTGTGTTTTCTTTATTGCTTCTGTTTCCATTTTCAGGT  50

seq1  CTTGAACAGTTTTACTCATTTCCTTCACTTGTTTGATTGTATTTTTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAGTTTTACTCATTTCCTTCACTTGTTTGATTGTATTTTTCTGT  100

seq1  ATTTCTTTAAGGGATTTATTCATTTCCTGTCTAAAGGCCTCTATCATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAAGGGATTTATTCATTTCCTGTCTAAAGGCCTCTATCATCCT  150

seq1  CATAAGGTAAGATTTAAGGTCATTTTCTTGTGCTTTGGCTATGTTGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTAAGATTTAAGGTCATTTTCTTGTGCTTTGGCTATGTTGCAGT  200

seq1  ATCCAAGGCTAGTTGGAAAGCTGGGCTTTGGTGATGCCATATTGCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGCTAGTTGGAAAGCTGGGCTTTGGTGATGCCATATTGCCCTGG  250

seq1  CTGTTGTTAATTATGTTCTTATGTTGGCCTCTGGGCATCTGGGCTTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTAATTATGTTCTTATGTTGGCCTCTGGGCATCTGGGCTTTGGG  300

seq1  ATTATTATAGGTCGAGGTGCTGATTTCTGAGTTCATCTTTGTTAGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAGGTCGAGGTGCTGATTTCTGAGTTCATCTTTGTTAGATGAG  350

seq1  TGTTTTAAACATGCTTCTTGCCTTGGTTTTTGTTTTTGTTTTCCCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAACATGCTTCTTGCCTTGGTTTTTGTTTTTGTTTTCCCTCTGG  400

seq1  TTTTCTGGCCTGAGTAGCCTGGGATTCCGATGAACAGCAAGTCTTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGCCTGAGTAGCCTGGGATTCCGATGAACAGCAAGTCTTCAGGT  450

seq1  ATAGTGCAATGTTTCCAATGTGTTTTTGTTCTGTTTTGTTTATTTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAATGTTTCCAATGTGTTTTTGTTCTGTTTTGTTTATTTTTATT  500

seq1  GTATTTTTTGTGGCCAGCATGACCTCTGGGGGTTTGGGTGCTGATGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTGTGGCCAGCATGACCTCTGGGGGTTTGGGTGCTGATGTTGC  550

seq1  CTCTGGGGTTCCTAGAACAGGTGTGGCCTCCAGGAAAGCACAGGTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGTTCCTAGAACAGGTGTGGCCTCCAGGAAAGCACAGGTCTTCT  600

seq1  GCCAATGTTGGTGGCCAGAATATAGGGCCCAAGTGATGGGGTGCAGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTTGGTGGCCAGAATATAGGGCCCAAGTGATGGGGTGCAGTTAC  650

seq1  GTCTGTTAGGTGTGCCGTAAGGGGACTTGGCAGACATAGGGAATAAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTAGGTGTGCCGTAAGGGGACTTGGCAGACATAGGGAATAAGGTG  700

seq1  GGGTCTTACCTGGGGTCCCTGGTGCTGATGTGGCCTTTGGGAAAGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTACCTGGGGTCCCTGGTGCTGATGTGGCCTTTGGGAAAGCAGCA  750

seq1  ACATATAGGGAATTTGAGACCAGCCTGGGGTACACCAGGTGTTACTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGGGAATTTGAGACCAGCCTGGGGTACACCAGGTGTTACTGACT  800

seq1  AGAAGAGCTAGGATGTAAGACTGGTCTAAGGTGAGGGTAACTCTCTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAGAGCTAGGATGTAAGACTGGTCTAAGGTGAGGGTAACTCTCTCTTG  850

seq1  GAAGTGTGATATCAGAGCAATGGGCTTTATCAAATATCACTGTTCTCATT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAGTGTGATATCAGAGCAATGGGCTTTATC-AATATCACTGTTCTCATT  899

seq1  TAATGCTTGGCTCTCTTTCTTCCCTTACAAATCTGTGTATGTGAGCCTCC  950
      | ||||||||||||||||||||||||||||||||||||||||||| || |
seq2  T-ATGCTTGGCTCTCTTTCTTCCCTTACAAATCTGTGTATGTGAG-CTTC  947

seq1  TGGATGGTATCTCTCAAGGGGCCCTACAAGGCTTCTGCTTCACAGGAGGC  1000
      ||||||||||||||||||||||||||||  |||||||||||||| |||||
seq2  TGGATGGTATCTCTCAAGGGGCCCTACA--GCTTCTGCTTCACA-GAGGC  994

seq1  TAAAGCCGCCTCCTTAGAACTCAGGGCTACAGAAGAGCACAGAGGAAGAT  1050
      ||||||||||||| ||| ||||| |||||||||| ||||| || ||||||
seq2  TAAAGCCGCCTCC-TAG-ACTCATGGCTACAGAA-AGCAC-GA-GAAGAT  1039

seq1  GGTAG  1055
      |||||
seq2  GGTAG  1044

seq1: chr3_130627225_130628194
seq2: B6Ng01-059E02.g_68_1018 (reverse)

seq1  GTAGCTCATGGCTCTTGTTTCCTCTTTATCCAAATTCCACCCATCAGAAT  50
      ||||||||| |||| ||||||   |||||||||| |||||||||||| ||
seq2  GTAGCTCAT-GCTC-TGTTTC--TTTTATCCAAA-TCCACCCATCAG-AT  44

seq1  GTTTAGAAATTCAAACACATTTGGTTATCGACAAAGAATTTGGAGACTAA  100
      |||   ||| || ||||||||  ||||||||||||||| ||||| |||| 
seq2  GTT---AAAATC-AACACATT--GTTATCGACAAAGAA-TTGGA-ACTA-  85

seq1  TTTAATTGGAAAGAATTTGGAAAGCACCTTTAACAAGGCAGTGTGTGTCC  150
       |||  ||||||||||||||||||||||||| ||||||||||||||||||
seq2  -TTA--TGGAAAGAATTTGGAAAGCACCTTT-ACAAGGCAGTGTGTGTCC  131

seq1  ATTTTTGCCGTTGAGAGTGTCCGTAGTTCCATCCCACTGGGAAGAGATTC  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTGCCGTTGAGAGTGTCCGTAGTTCCATCCCACTGGGAAGAGATTC  180

seq1  TGAGACCTGGCCCTTGACAGTGAAATGCACCTCGTTCCCTCCTTTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGGCCCTTGACAGTGAAATGCACCTCGTTCCCTCCTTTGACAA  230

seq1  GCTCTCTTCCCGCTGGAGGCATCTGAGAGCCACTTATTTCCTTTAGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTCCCGCTGGAGGCATCTGAGAGCCACTTATTTCCTTTAGTAGC  280

seq1  AGAGGAACTTTGGACCGAATTACCTGTTTTCCTGGAATCTAATCATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACTTTGGACCGAATTACCTGTTTTCCTGGAATCTAATCATCTCT  330

seq1  CCTGAACTG-AATTTAGCTCAGTGCTCGAGACATAACTTTATCTCCATCC  399
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTGAAATTTAGCTCAGTGCTCGAGACATAACTTTATCTCCATCC  380

seq1  TCAACCCTCTCCCAGGTCTCCCCCAGCTCACCTCGAACCTCAAACTCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTCTCCCAGGTCTCCCCCAGCTCACCTCGAACCTCAAACTCAGG  430

seq1  GATAAACAATGCATGTGGCTCTCTTAGCTGGTGACGCTGTTATGGATCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAATGCATGTGGCTCTCTTAGCTGGTGACGCTGTTATGGATCCG  480

seq1  TAATGACGACATAAGACAGGAAGCTGGATTTTATTGGGCCTAAGTGAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACGACATAAGACAGGAAGCTGGATTTTATTGGGCCTAAGTGAATA  530

seq1  AGATTTGACATTACCACCCCGAGCATCAGAATCTCACGTGCTTTCTCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGACATTACCACCCCGAGCATCAGAATCTCACGTGCTTTCTCTCC  580

seq1  ACCAGTCTCTGCCTGGCTGTAAAGAAGACAAAGATCTCTGTTTACGCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTCTGCCTGGCTGTAAAGAAGACAAAGATCTCTGTTTACGCTGT  630

seq1  GGCATCCTATAATTTAGAAAACTATAAAATGCAGCGCATGAGTGTTACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTATAATTTAGAAAACTATAAAATGCAGCGCATGAGTGTTACTC  680

seq1  AGACAGCACTGACGGATCATCGGGAAGAGCTGCCCTCAGCAGAGTATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACTGACGGATCATCGGGAAGAGCTGCCCTCAGCAGAGTATAAA  730

seq1  CGTGTACCTGTCTGGCAGCCAGCCAGCCAGCATGCCCACAGCCCCAGGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACCTGTCTGGCAGCCAGCCAGCCAGCATGCCCACAGCCCCAGGCG  780

seq1  GATGGGAGGCATTCCATTCTTGGGCCTACTCTTCAGCTCTCTGCCTTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGGCATTCCATTCTTGGGCCTACTCTTCAGCTCTCTGCCTTCTT  830

seq1  CCAGCCTCAGGGACCTTCCTGTCACATGAGGCAGCTACCAAGCTGGCAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCAGGGACCTTCCTGTCACATGAGGCAGCTACCAAGCTGGCAAC  880

seq1  CGTGGCAGACACAGTGTGTTACAGGGAACATTTCCAGACCACAGGGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCAGACACAGTGTGTTACAGGGAACATTTCCAGACCACAGGGAATT  930

seq1  TGGCCACATGACACTGAATTC  970
      |||||||||||||||||||||
seq2  TGGCCACATGACACTGAATTC  951