BAC Information

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BAC

Clone NameB6Ng01-059L13
Chromosome3 (Build37)
Map Location 89,130,463 - 89,261,614
singlet/doubletdoublet
Overlap geneEfna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1
Upstream gene0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3
Downstream genePmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059L13.bB6Ng01-059L13.g
ACCDH880913DH880914
length928737
definitionDH880913|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L13, 5' end.DH880914|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,260,686 - 89,261,614)(89,130,463 - 89,131,199)
sequence
gaattctgaacctgcctgacataactcaccccttccttcagccccaccct
ggaatcaaatttccctggaattctagtcccaatcacaaaacttccgaatg
tatttgcctaagccaggcaatggtggcacacattcttgatctcagcactc
aggagtcagaggcaggaagatctctgagttcgaagccacagggtgattca
tagccatctgtaactccagttccagggaatcttgacagcctcttctggcc
tccataggcactgcgtgtatatggtgcactaatatacgtgcaggcaaaac
actcacatacataaaattaagtaaggggctgagagacttgtatcaaggtc
tagacctctaaatgatgaaattagctccatctggttccaaaaccagatgt
tttccagtccagagtatgaacatttcccatcctggatatacctgcccagc
cccttccctctgcttcttaccccaaactgcattccatgctttcctcagat
gctcaaaagcataccaagtgctatcaaaggcagggccaggaacaatgtgg
gtggagtcgggtggtgtctcgaatgactgatcaagaagtgaaggaaagaa
tgggtgctccatgggggagaccaggaggccaggacttccccctaagttag
aggggacctctatggatgcatatacccaagactaggactgcacaaccaca
tacccaattgctcaaggtcctggggcagctcctagaggccccttcttccc
cctgcctccctcccagaccctcccacctgcagtccgacccgctgctgcca
ccgtgtgggtcacaaccatacttctctgaaaagagttatctgtagaaaca
agaaccaggaggagtctgacctgtagtggatagctcctccagactcaatt
cagagtctagacttaagacgtgtgtgtg
gaattccctgtgtagaccaggttggccttgaactcacagagatccacttg
cctcaacctcttggctgctagggttagagtcatataccaacatacccagt
ctttttgtttgtttgtttgtttgtttgtttgtttgttgttgtttcaagaa
agggtttctgtctgtagccttggctgtcctggaactcgctctgtagacca
ggctggcttccaactcatagggatccacctgcctctgctccaaatgcggg
attaaaggtgagcaccaccacccagcctatattttaaaaaataaatcagg
tatagtcgtgcctatagttccagagtttgggaggtagaggcaaggaggat
caaaagttcaaaatcatcctcagctacaaaatgagtttgaggccaaccta
ggctaaatgagactctgtttcaaagtaataataatgatcaagctgcctgc
tactaataaaatcacttcctggtttcatcgcccacagtaggtcaagtagg
tcacagacctaagtgtgaaactcttaggcctgactctaatttgctgtctg
tgaagccagagttctctccatggcgctggtcctctgcgcctcgggcccca
ctggccctgggactgggtgccatgaccttcctaggaaggttgagctcata
cccccccccccaaattctgatcgtggtactgtattcttctcaccccctgg
gagccaaagaatcaggaagctgaacaggtctagggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89260686_89261614
seq2: B6Ng01-059L13.b_49_976 (reverse)

seq1  CACACACACGTCTTTAAGTCTAGACTCTGAATTGAGTCTGGAGGAGCTAT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACACACACGTC-TTAAGTCTAGACTCTGAATTGAGTCTGGAGGAGCTAT  49

seq1  GCACTACAGGTCAGGCTCCTCCTGGTTCTTGTTTCTTGCAGATAGCTCTT  100
       ||||||||||||| |||||||||||||||||||| | |||||| |||||
seq2  CCACTACAGGTCAGACTCCTCCTGGTTCTTGTTTC-TACAGATAACTCTT  98

seq1  TTCAGAGAAGTATGGTTGTGA-CCACACGGTGGCAGCAGCGGGTCGGACT  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCAGAGAAGTATGGTTGTGACCCACACGGTGGCAGCAGCGGGTCGGACT  148

seq1  GCAGGTGGGAGGGTCTGGGAGGGAGGCAGGGGGAAGAAGGGGCCTCTAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGGAGGGTCTGGGAGGGAGGCAGGGGGAAGAAGGGGCCTCTAGG  198

seq1  AGCTGCCCCAGGACCTTGAGCAATTGGGTATGTGGTTGTGCAGTCCTAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCCAGGACCTTGAGCAATTGGGTATGTGGTTGTGCAGTCCTAGT  248

seq1  CTTGGGTATATGCATCCATAGAGGTCCCCTCTAACTTAGGGGGAAGTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTATATGCATCCATAGAGGTCCCCTCTAACTTAGGGGGAAGTCCT  298

seq1  GGCCTCCTGGTCTCCCCCATGGAGCACCCATTCTTTCCTTCACTTCTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTGGTCTCCCCCATGGAGCACCCATTCTTTCCTTCACTTCTTGA  348

seq1  TCAGTCATTCGAGACACCACCCGACTCCACCCACATTGTTCCTGGCCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATTCGAGACACCACCCGACTCCACCCACATTGTTCCTGGCCCTG  398

seq1  CCTTTGATAGCACTTGGTATGCTTTTGAGCATCTGAGGAAAGCATGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATAGCACTTGGTATGCTTTTGAGCATCTGAGGAAAGCATGGAAT  448

seq1  GCAGTTTGGGGTAAGAAGCAGAGGGAAGGGGCTGGGCAGGTATATCCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGGGGTAAGAAGCAGAGGGAAGGGGCTGGGCAGGTATATCCAGG  498

seq1  ATGGGAAATGTTCATACTCTGGACTGGAAAACATCTGGTTTTGGAACCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAATGTTCATACTCTGGACTGGAAAACATCTGGTTTTGGAACCAG  548

seq1  ATGGAGCTAATTTCATCATTTAGAGGTCTAGACCTTGATACAAGTCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCTAATTTCATCATTTAGAGGTCTAGACCTTGATACAAGTCTCTC  598

seq1  AGCCCCTTACTTAATTTTATGTATGTGAGTGTTTTGCCTGCACGTATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTACTTAATTTTATGTATGTGAGTGTTTTGCCTGCACGTATATT  648

seq1  AGTGCACCATATACACGCAGTGCCTATGGAGGCCAGAAGAGGCTGTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACCATATACACGCAGTGCCTATGGAGGCCAGAAGAGGCTGTCAAG  698

seq1  ATTCCCTGGAACTGGAGTTACAGATGGCTATGAATCACCCTGTGGCTTCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGGAACTGGAGTTACAGATGGCTATGAATCACCCTGTGGCTTCG  748

seq1  AACTCAGAGATCTTCCTGCCTCTGACTCCTGAGTGCTGAGATCAAGAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGATCTTCCTGCCTCTGACTCCTGAGTGCTGAGATCAAGAATG  798

seq1  TGTGCCACCATTGCCTGGCTTAGGCAAATACATTCGGAAGTTTTGTGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCATTGCCTGGCTTAGGCAAATACATTCGGAAGTTTTGTGATT  848

seq1  GGGACTAGAATTCCAGGGAAATTTGATTCCAGGGTGGGGCTGAAGGAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGAATTCCAGGGAAATTTGATTCCAGGGTGGGGCTGAAGGAAGG  898

seq1  GGTGAGTTATGTCAGGCAGGTTCAGAATTC  929
      ||||||||||||||||||||||||||||||
seq2  GGTGAGTTATGTCAGGCAGGTTCAGAATTC  928

seq1: chr3_89130463_89131199
seq2: B6Ng01-059L13.g_68_804

seq1  GAATTCCCTGTGTAGACCAGGTTGGCCTTGAACTCACAGAGATCCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTGTAGACCAGGTTGGCCTTGAACTCACAGAGATCCACTTG  50

seq1  CCTCAACCTCTTGGCTGCTAGGGTTAGAGTCATATACCAACATACCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACCTCTTGGCTGCTAGGGTTAGAGTCATATACCAACATACCCAGT  100

seq1  CTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGTTGTTTCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGTTGTTTCAAGAA  150

seq1  AGGGTTTCTGTCTGTAGCCTTGGCTGTCCTGGAACTCGCTCTGTAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTGTCTGTAGCCTTGGCTGTCCTGGAACTCGCTCTGTAGACCA  200

seq1  GGCTGGCTTCCAACTCATAGGGATCCACCTGCCTCTGCTCCAAATGCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTCCAACTCATAGGGATCCACCTGCCTCTGCTCCAAATGCGGG  250

seq1  ATTAAAGGTGAGCACCACCACCCAGCCTATATTTTAAAAAATAAATCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGAGCACCACCACCCAGCCTATATTTTAAAAAATAAATCAGG  300

seq1  TATAGTCGTGCCTATAGTTCCAGAGTTTGGGAGGTAGAGGCAAGGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCGTGCCTATAGTTCCAGAGTTTGGGAGGTAGAGGCAAGGAGGAT  350

seq1  CAAAAGTTCAAAATCATCCTCAGCTACAAAATGAGTTTGAGGCCAACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTTCAAAATCATCCTCAGCTACAAAATGAGTTTGAGGCCAACCTA  400

seq1  GGCTAAATGAGACTCTGTTTCAAAGTAATAATAATGATCAAGCTGCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATGAGACTCTGTTTCAAAGTAATAATAATGATCAAGCTGCCTGC  450

seq1  TACTAATAAAATCACTTCCTGGTTTCATCGCCCACAGTAGGTCAAGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATAAAATCACTTCCTGGTTTCATCGCCCACAGTAGGTCAAGTAGG  500

seq1  TCACAGACCTAAGTGTGAAACTCTTAGGCCTGACTCTAATTTGCTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACCTAAGTGTGAAACTCTTAGGCCTGACTCTAATTTGCTGTCTG  550

seq1  TGAAGCCAGAGTTCTCTCCATGGCGCTGGTCCTCTGCGCCTCGGGCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGAGTTCTCTCCATGGCGCTGGTCCTCTGCGCCTCGGGCCCCA  600

seq1  CTGGCCCTGGGACTGGGTGCCATGACCTTCCTAGGAAGGTTGAGCTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTGGGACTGGGTGCCATGACCTTCCTAGGAAGGTTGAGCTCATA  650

seq1  CCCCCCCCCCCCAAATTCTGATCGTGGTACTGTATTCTTCTCA-CCCCTG  699
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -CCCCCCCCCCCAAATTCTGATCGTGGTACTGTATTCTTCTCACCCCCTG  699

seq1  GGAGCCAAGGAATCAGGAAGCTGAACAGGTCTAGGGCG  737
      |||||||| |||||||||||||||||||||||||||||
seq2  GGAGCCAAAGAATCAGGAAGCTGAACAGGTCTAGGGCG  737