BAC Information

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BAC

Clone NameB6Ng01-059N05
Chromosome3 (Build37)
Map Location 108,831,927 - 108,959,806
singlet/doubletdoublet
Overlap geneB430201A12Rik, 4930443G12Rik, Slc25a24
Upstream geneGstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik
Downstream geneVav3, Ntng1, LOC100043181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059N05.bB6Ng01-059N05.g
ACCDH880987DH880988
length948980
definitionDH880987|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N05, 5' end.DH880988|Mus musculus domesticus DNA, BAC clone: B6Ng01-059N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,831,927 - 108,832,876)(108,958,822 - 108,959,806)
sequence
gaattcacatggcagaaagaagcaactagctaatcccgcagattggcctc
tgacctccatccataggttcactgtaaggcatgcacacctacaaatacac
ttgcattatataaataaataaataaataaatgtatttttttagacctttt
aaagacaaaactggactgcagagaaatgtcggtgggtaaagagcctcagt
gcaagccggacctcaggagcgtccacagtgtgacttcaatcctgagaagc
catggaaaagtggaaagagaaccagcttcacaaagttgtcctctgaggcc
cgaacaccaccatggcatgcatgctttcacacacacacacacacccacac
acacacacacacacacacacacacacacatacacacacctctcacacccc
gcacaagaataacactacataacaatttaaaaaaggcaaaacctaagaca
gaaaaaagtcctaaatttaaacgaagtacaacttggaataagaagtgatg
aactgaatgaataaagtgatggctttatggattttacctaggatttggga
gaaagtaggaggtgttccaggtgaagaagtaggagaaataaagattcaga
ctactacttgggcgaggggaattttgctgccttgtgggtcagaaagagat
gggggaagtgttagtggactttgatgtctgtagcttgcagaagcagaggg
cctgaacattgcgatcaggagggcaggctggggataggggaaataatgag
aatctgtgctgtttacagggagcaaggctgagccttcgtgcctgtgaaag
gttaaaggttgaaatatgcatttgggaattgtggtagtcactgatggcgg
aagcccaaaaggcgggtaggagtgagctgccctggagaatatttaatggg
cagatggaggggggaggtgattgtggaggcttcaagacagcagcctga
gaattcatctggaatagttaaactatcccctatgtcaattccctggtgga
atggaaagagatcccacagttcttcagtcgcaaacagataagcccagaac
tttctttttgtgtcggagctgttactgttaggagcgagcccacataattg
tttttgcaacttaattatttaaatgctgtggtgggtataactaggtcaca
gagcactttcctaacatgttccagatcctagcaccacacatataaaatga
ccttgtcataaactttatgggcaagaatgaaaggtaataaaccaagctgg
tagtaactctctcttcttccatttgttcccaataaaatgaatttatgatt
ataacatcaaatgttaacaactatccccaaagatataatacaaagttcac
agtataaaatgtatagtcataattgattttatgatgttctgtgtaaacgt
agacattgttactggtgacagtgtgaactctcagagtattaagtgggagt
caaagacacttccctccaagtatagagaacaaatccacaggttgaggggt
gggagagcctgcagaaggtccccagaggcttcaagaaacagactgtgtga
caaacctaatttataccaatatattttgccagaatgctaatgaaagaatc
acaataaaaaatttgtgaagtataaactggcaggaaatgccaaccacatg
agtcaaagttattccctagcattcagtgagtaatgcaataccttatgtcg
gcaatgagtcaaggcagcctaaataagcaaaggttcagggacccgaggcc
ataacatctttagctatctggatgcacaggaatgactttggtaatgtgtg
tcatcggactaccagactccccatagcagagcagcacatgctaatgagag
ccagacagcttgttcatcaagataggactcctccagttttgagaaagctg
tatttatactaccttgcggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108831927_108832876
seq2: B6Ng01-059N05.b_48_995

seq1  GAATTCACATGGCAGAAAGAAGCAACTAGCTAATCCCGCAGATTGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGGCAGAAAGAAGCAACTAGCTAATCCCGCAGATTGGCCTC  50

seq1  TGACCTCCATCCATAGGTTCACTGTAAGGCATGCACACCTACAAATACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCATCCATAGGTTCACTGTAAGGCATGCACACCTACAAATACAC  100

seq1  TTGCATTATATAAATAAATAAATAAATAAATGTATTTTTTTAGACCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTATATAAATAAATAAATAAATAAATGTATTTTTTTAGACCTTTT  150

seq1  AAAGACAAAACTGGACTGCAGAGAAATGTCGGTGGGTAAAGAGCCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAACTGGACTGCAGAGAAATGTCGGTGGGTAAAGAGCCTCAGT  200

seq1  GCAAGCCGGACCTCAGGAGCGTCCACAGTGTGACTTCAATCCTGAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCGGACCTCAGGAGCGTCCACAGTGTGACTTCAATCCTGAGAAGC  250

seq1  CATGGAAAAGTGGAAAGAGAACCAGCTTCACAAAGTTGTCCTCTGAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAAGTGGAAAGAGAACCAGCTTCACAAAGTTGTCCTCTGAGGCC  300

seq1  CGAACACCACCATGGCATGCATGCTTTCACACACACACACACACCCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACCACCATGGCATGCATGCTTTCACACACACACACACACCCACAC  350

seq1  ACACACACACACACACACACACACACACATACACACACCTCTCACACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATACACACACCTCTCACACCCC  400

seq1  GCACAAGAATAACACTACATAACAATTTAAAAAAGGCAAAACCTAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGAATAACACTACATAACAATTTAAAAAAGGCAAAACCTAAGACA  450

seq1  GAAAAAAGTCCTAAATTTAAACGAAGTACAACTTGGAATAAGAAGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGTCCTAAATTTAAACGAAGTACAACTTGGAATAAGAAGTGATG  500

seq1  AACTGAATGAATAAAGTGATGGCTTTATGGATTTTACCTAGGATTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATGAATAAAGTGATGGCTTTATGGATTTTACCTAGGATTTGGGA  550

seq1  GAAAGTAGGAGGTGTTCCAGGTGAAGAAGTAGGAGAAATAAAGATTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGGAGGTGTTCCAGGTGAAGAAGTAGGAGAAATAAAGATTCAGA  600

seq1  CTACTACTTGGGCGAGGGGAATTTTGCTGCCTTGTGGGTCAGAAAGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTTGGGCGAGGGGAATTTTGCTGCCTTGTGGGTCAGAAAGAGAT  650

seq1  GGGGGAAGTGTTAGTGGACTTTGATGTCTGTAGCTTGCAGAAGCAGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGTGTTAGTGGACTTTGATGTCTGTAGCTTGCAGAAGCAGAGGG  700

seq1  CCTGAACATTGCGATCAGGAGGGCAGGCTGGGGATAGGGGAAATAATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACATTGCGATCAGGAGGGCAGGCTGGGGATAGGGGAAATAATGAG  750

seq1  AATCTGTGCTGTTTACAGGGAGCAAGGCTGAGCCTTCGTGCCTGTGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGCTGTTTACAGGGAGCAAGGCTGAGCCTTCGTGCCTGTGAAAG  800

seq1  GTT-AAGGTTGAAAATATGCATTTGGGAATTGTGGTAGTCACTGATGGCG  849
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGTTG-AAATATGCATTTGGGAATTGTGGTAGTCACTGATGGCG  849

seq1  GAAGCCCAAAAGGCGGGTAGGAGTGAGCTGCCCTGGAGAATATTTAATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAAAAGGCGGGTAGGAGTGAGCTGCCCTGGAGAATATTTAATGG  899

seq1  GCAGATGGA-GGGGGAGGTGATTGTGAAGGCTTCCAAGAACAAGCAGCCT  948
      ||||||||| |||||||||||||||| |||||| |||||   ||||||||
seq2  GCAGATGGAGGGGGGAGGTGATTGTGGAGGCTT-CAAGA--CAGCAGCCT  946

seq1  GA  950
      ||
seq2  GA  948

seq1: chr3_108958822_108959806
seq2: B6Ng01-059N05.g_68_1047 (reverse)

seq1  CCCCCCCCCCCCCGCAAGGTAGTATAAATACAGCTTTTCTCAAAACTTGG  50
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  CCCCCCCCCCCCCGCAAGGTAGTATAAATACAGC-TTTCTCAAAAC-TGG  48

seq1  AGGAAGTCCTATCTTGATGAACAAGCTGTCTGGCTCTCATTAGCATGTGC  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-AGTCCTATCTTGATGAACAAGCTGTCTGGCTCTCATTAGCATGTGC  97

seq1  TGCTTCTGCTATGGGGAAGTCTGGTAGTCCGATGACACACATTACCAAAG  150
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGC-TCTGCTATGGGG-AGTCTGGTAGTCCGATGACACACATTACCAAAG  145

seq1  TCATTCCTGTGCATCCAGATAGCTAAAGATGTTATGGCCTCGGGTCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGTGCATCCAGATAGCTAAAGATGTTATGGCCTCGGGTCCCTG  195

seq1  AACCTTTGCTTATTTAGGCTGCCTTGACTCATTGCCGACATAAGGTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGCTTATTTAGGCTGCCTTGACTCATTGCCGACATAAGGTATTG  245

seq1  CATTACTCACTGAATGCTAGGGAATAACTTTGACTCATGTGGTTGGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTCACTGAATGCTAGGGAATAACTTTGACTCATGTGGTTGGCATT  295

seq1  TCCTGCCAGTTTATACTTCACAAATTTTTTATTGTGATTCTTTCATTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAGTTTATACTTCACAAATTTTTTATTGTGATTCTTTCATTAGC  345

seq1  ATTCTGGCAAAATATATTGGTATAAATTAGGTTTGTCACACAGTCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCAAAATATATTGGTATAAATTAGGTTTGTCACACAGTCTGTTT  395

seq1  CTTGAAGCCTCTGGGGACCTTCTGCAGGCTCTCCCACCCCTCAACCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCCTCTGGGGACCTTCTGCAGGCTCTCCCACCCCTCAACCTGTG  445

seq1  GATTTGTTCTCTATACTTGGAGGGAAGTGTCTTTGACTCCCACTTAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTCTCTATACTTGGAGGGAAGTGTCTTTGACTCCCACTTAATAC  495

seq1  TCTGAGAGTTCACACTGTCACCAGTAACAATGTCTACGTTTACACAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGTTCACACTGTCACCAGTAACAATGTCTACGTTTACACAGAAC  545

seq1  ATCATAAAATCAATTATGACTATACATTTTATACTGTGAACTTTGTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAATCAATTATGACTATACATTTTATACTGTGAACTTTGTATTA  595

seq1  TATCTTTGGGGATAGTTGTTAACATTTGATGTTATAATCATAAATTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGGGGATAGTTGTTAACATTTGATGTTATAATCATAAATTCATT  645

seq1  TTATTGGGAACAAATGGAAGAAGAGAGAGTTACTACCAGCTTGGTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGGAACAAATGGAAGAAGAGAGAGTTACTACCAGCTTGGTTTATT  695

seq1  ACCTTTCATTCTTGCCCATAAAGTTTATGACAAGGTCATTTTATATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCATTCTTGCCCATAAAGTTTATGACAAGGTCATTTTATATGTGT  745

seq1  GGTGCTAGGATCTGGAACATGTTAGGAAAGTGCTCTGTGACCTAGTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAGGATCTGGAACATGTTAGGAAAGTGCTCTGTGACCTAGTTATA  795

seq1  CCCACCACAGCATTTAAATAATTAAGTTGCAAAAACAATTATGTGGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACAGCATTTAAATAATTAAGTTGCAAAAACAATTATGTGGGCTC  845

seq1  GCTCCTAACAGTAACAGCTCCGACACAAAAAGAAAGTTCTGGGCTTATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAACAGTAACAGCTCCGACACAAAAAGAAAGTTCTGGGCTTATCT  895

seq1  GTTTGCGACTGAAGAACTGTGGGATCTCTTTCCATTCCACCAGGGAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCGACTGAAGAACTGTGGGATCTCTTTCCATTCCACCAGGGAATTG  945

seq1  ACATAGGGGATAGTTTAACTATTCCAGATGAATTC  985
      |||||||||||||||||||||||||||||||||||
seq2  ACATAGGGGATAGTTTAACTATTCCAGATGAATTC  980