BAC Information

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BAC

Clone NameB6Ng01-060B19
Chromosome3 (Build37)
Map Location 144,856,383 - 145,001,164
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060B19.bB6Ng01-060B19.g
ACCDH881186DH881187
length1,1781,213
definitionDH881186|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B19, 5' end.DH881187|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,856,383 - 144,857,586)(144,999,913 - 145,001,164)
sequence
gaattcttttagtaaaagttttctattgtgttctcacttttatagtcata
gccatacctaatattcttggttacttacatatttagacacactgggccct
ctgtgtggaaaagcataaaagtaggatttttcttctactttgtcatcagc
tttagagttgacttaggttttgtgaagtattaataatggtgttattgaag
atgtcattttaaataacagtgttttattccagctccatggctcttcctat
gttttccttccaggttctttctcattctcttaatttttaaatgttatagt
ctctgccatcttagcttataaaaacaggtataaaataaacagttttgtgt
ctctctgatgtccaaattcttccagttttcatacaaactgcatttgcccc
atgtgctaagtctcttagtgatgagcttatgagatcacgttgtagctatt
cagtcacatacctgcattcatggaaactgaacacaaacatcaggaaagta
taacctcaaaaaaagcccaagaactattcaaaaagtaagacatactaaag
catttttctggcagtaatccttttcatttggcctttcctcttctctttcc
aactttaaaaaaaaaatagatcaagaaatcagaaagcaactatcttcaaa
tccacgttgaatccacatatggtctgaaaatatttgattgccagccatgt
gtaagaaaatgcagatgcttagcccctttttgttgacagcatcaccatta
ttaactctgtttgatgataacacagcacacagtactctgggattgatacc
ttctcctctttcagagctcaaggttccagagatagctcatgacccattgg
cccccagtaaccattaggaggacctcattgctccctgttaaatctggttc
tatgtctcacttccaggtctgtgaactaatggtctgtaaacattgagtga
gtacaggactggtctaattagcgctgatgtcgtgctctattagttctgat
gtcagatgatagacactttctgaggaagtcatgacttatctgtcccttcc
aaatagataactcaacttctttggttctcaaatgcagataataccttttc
ttaggttccagaattctatttctattgacacaaagctaatgagcactcag
gaaagtactgcaatgtaactaagacatg
gaattctaaagttgaaggtcagcggtgcgcatagatatgtatattttctt
ggagagggcctgtagtcattacagaatgctcgaagagacttgtgaatcag
aggtttaagacccactgttctgaacacagcaggaaaagagaaagcaagaa
gactaaaacgttgctagttcataattttgctgataatctatagctagtcg
attaaaagctgttctttttgctctatataaaatgagaataactcggagga
aacatggcagtggcgagagaggaattatctccccggcgagatgctttatg
cccaccttagcgaccagagaatgccagaaagcacttacgtgttcgccgcg
gagtccggggagccctggatgtcctttgagaccctacgaggaaagaaatg
gagatctggcatggaaagttaacccacagaaagcagttgactaacaaaat
gtagattctaaaaatcttgggatctctgtttctatgtttacttgctctgt
tttttaacactggacgctgaacccagagcctcacacactccaggcaagca
agcatcccaccactgagctatatccccagcccctaattagcttttgatca
ctactgttagttccctaatcaatacaatattctctctatttcttactaaa
tttgaatacgagtttaattcatattttaaaaactgaattctaaaaataac
tgttataaaaggctccaatctagcaaagaatctgctaaatatactgaggc
tttttagaagtgtgtttagctcagtagtattgagacaacatgccttcaga
cataatctgtttatcattactgagaagttggaccacatccagccctgtct
ctaatccagtcactgttgcaattcatgaatgaactgaccaaggaaagaga
ctgtccacagattcatccaaagggctctttaaaaaaaaaaagccatctag
gaaatcactataggaatttttttctaggtcagagaacacgacaaatccta
tccctcattaacatccttagtataacatagatgtgaattactccactaaa
gaagatcttgctacgaataaagaagtttgaaccaaagaagaaaggaaaga
attttgagcttattggatcaacttaggatcaattcatcggacttcattaa
cataggaacggttcctctttgcgttctaggtgtagcatgttcatcatgcc
atgcgtgttgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144856383_144857586
seq2: B6Ng01-060B19.b_45_1222

seq1  GAATTCTTTTAGTAAAAGTTTTCTATTGTGTTCTCACTTTTATAGTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGTAAAAGTTTTCTATTGTGTTCTCACTTTTATAGTCATA  50

seq1  GCCATACCTAATATTCTTGGTTACTTACATATTTAGACACACTGGGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACCTAATATTCTTGGTTACTTACATATTTAGACACACTGGGCCCT  100

seq1  CTGTGTGGAAAAGCATAAAAGTAGGATTTTTCTTCTACTTTGTCATCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGAAAAGCATAAAAGTAGGATTTTTCTTCTACTTTGTCATCAGC  150

seq1  TTTAGAGTTGACTTAGGTTTTGTGAAGTATTAATAATGGTGTTATTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTTGACTTAGGTTTTGTGAAGTATTAATAATGGTGTTATTGAAG  200

seq1  ATGTCATTTTAAATAACAGTGTTTTATTCCAGCTCCATGGCTCTTCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTTTAAATAACAGTGTTTTATTCCAGCTCCATGGCTCTTCCTAT  250

seq1  GTTTTCCTTCCAGGTTCTTTCTCATTCTCTTAATTTTTAAATGTTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTCCAGGTTCTTTCTCATTCTCTTAATTTTTAAATGTTATAGT  300

seq1  CTCTGCCATCTTAGCTTATAAAAACAGGTATAAAATAAACAGTTTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATCTTAGCTTATAAAAACAGGTATAAAATAAACAGTTTTGTGT  350

seq1  CTCTCTGATGTCCAAATTCTTCCAGTTTTCATACAAACTGCATTTGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGATGTCCAAATTCTTCCAGTTTTCATACAAACTGCATTTGCCCC  400

seq1  ATGTGCTAAGTCTCTTAGTGATGAGCTTATGAGATCACGTTGTAGCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAGTCTCTTAGTGATGAGCTTATGAGATCACGTTGTAGCTATT  450

seq1  CAGTCACATACCTGCATTCATGGAAACTGAACACAAACATCAGGAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACATACCTGCATTCATGGAAACTGAACACAAACATCAGGAAAGTA  500

seq1  TAACCTCAAAAAAAGCCCAAGAACTATTCAAAAAGTAAGACATACTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAAAAAAAGCCCAAGAACTATTCAAAAAGTAAGACATACTAAAG  550

seq1  CATTTTTCTGGCAGTAATCCTTTTCATTTGGCCTTTCCTCTTCTCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTGGCAGTAATCCTTTTCATTTGGCCTTTCCTCTTCTCTTTCC  600

seq1  AACTTTAAAAAAAAAATAGATCAAGAAATCAGAAAGCAACTATCTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAAAAAAAATAGATCAAGAAATCAGAAAGCAACTATCTTCAAA  650

seq1  TCCACGTTGAATCCACATATGGTCTGAAAATATTTGATTGCCAGCCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTTGAATCCACATATGGTCTGAAAATATTTGATTGCCAGCCATGT  700

seq1  GTAAGAAAATGCAGATGCTTAGCCCCTTTTTGTTGACAGCATCACCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAATGCAGATGCTTAGCCCCTTTTTGTTGACAGCATCACCATTA  750

seq1  TTAACTCTGTTTGATGATAACACAGCACACAGTACTCTGGGATTGATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGTTTGATGATAACACAGCACACAGTACTCTGGGATTGATACC  800

seq1  TTCTCCTCTTTCAGAGCTCAAGGTTCCAGAGATAGCTCATGACCCATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTTTCAGAGCTCAAGGTTCCAGAGATAGCTCATGACCCATTGG  850

seq1  CCCCCAGTAACCATTAGGAGGACCTCATTGCTCCCTGTTAAATCTGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTAACCATTAGGAGGACCTCATTGCTCCCTGTTAAATCTGGTTC  900

seq1  TATGTCTCACCTCCAGGTCTGTGAACTAATGGTCTGTAAACATTGAGTGA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCACTTCCAGGTCTGTGAACTAATGGTCTGTAAACATTGAGTGA  950

seq1  GTACAAGGAACTGGTCTTAATTAGCGCTGATGTCCGTGCTCTTAATTAGT  1000
      |||||  | ||||||| |||||||||||||||| ||||||||  ||||||
seq2  GTACA--GGACTGGTC-TAATTAGCGCTGATGT-CGTGCTCT--ATTAGT  994

seq1  TCTGATGTCCAGATGATTAGAACAC-TTCTGAAGGAAGTCATGACTTTAT  1049
      |||||||| ||||||| ||| |||| ||||| ||||||||||||| ||||
seq2  TCTGATGT-CAGATGA-TAG-ACACTTTCTG-AGGAAGTCATGAC-TTAT  1039

seq1  CTGTCCCCCTCCCAAATAGATAACTTCAACTTCCTTGGTTCTCAAAAATG  1099
      ||||  |||| ||||||||||||| |||||||| |||||||||  |||||
seq2  CTGT--CCCTTCCAAATAGATAAC-TCAACTTCTTTGGTTCTC--AAATG  1084

seq1  CAGATAATACCCCTTTTCTTAGTTTCACAG-ATTCTA-TTCTATTTGGAC  1147
      |||||||||  ||||||||||| ||| ||| |||||| |||||||  |||
seq2  CAGATAATA--CCTTTTCTTAGGTTC-CAGAATTCTATTTCTATT--GAC  1129

seq1  ACAAGAGCTAATGAGCAACTCAAGAAAAAGTAGCTTGTAAGTGGTAACTA  1197
      |||| ||||||||||| ||||| |  ||||||   || ||   |||||||
seq2  ACAA-AGCTAATGAGC-ACTCAGG--AAAGTA--CTGCAA--TGTAACTA  1171

seq1  AGACAAG  1204
      ||||| |
seq2  AGACATG  1178

seq1: chr3_144999913_145001164
seq2: B6Ng01-060B19.g_72_1284 (reverse)

seq1  GCCCATACACGCATGGGCATGTATGTACACATGCATACACACACCAAAGA  50
      ||||| |||||||| |||||| |||   |||||| ||||     |  |||
seq2  GCCCA-ACACGCAT-GGCATG-ATG--AACATGC-TACA-----CCTAGA  39

seq1  AAGGGGGAAAAAAGAAAGGAACTGTTCTCTATGTTCACTGAAGTTTCTGG  100
      | |       ||||  |||||| |||| ||||||| | |||||  || | 
seq2  ACG------CAAAG--AGGAACCGTTC-CTATGTT-AATGAAG--TCCG-  76

seq1  AAATGAATATTGATCCACTAAGTTTGTATCAATAAGCCTCAAAAATCTCT  150
        ||||  |||||||  ||||| |||   ||||||| ||||||| ||| |
seq2  --ATGA--ATTGATC--CTAAG-TTGATCCAATAAG-CTCAAAATTCTTT  118

seq1  CCTTTCTTCTTTGTTTC-AACTTCTTTTATTCTGTTGC-AGATC-TCTCT  197
      ||||||||||||| ||| |||||| ||||||| || || ||||| ||| |
seq2  CCTTTCTTCTTTGGTTCAAACTTC-TTTATTC-GTAGCAAGATCTTCTTT  166

seq1  AGTGGGGTTAATTTCACCATCTATGTTATAACCTAGGGTGTTAATGAGGG  247
      ||||| ||  | |||| |||||||||||| ||  ||| ||||||||||||
seq2  AGTGGAGT--AATTCA-CATCTATGTTAT-ACTAAGGATGTTAATGAGGG  212

seq1  ATTAGGATTTGTTCGTGTTTCTCTGACCTAG-AAAAGATTTCTATAGTTG  296
      | ||||||||| ||||| ||||||||||||| |||| ||| |||||| ||
seq2  A-TAGGATTTG-TCGTG-TTCTCTGACCTAGAAAAAAATTCCTATAG-TG  258

seq1  ATTTCCTAGATGGCTTTTTTTTTTTTAAAGAGCCCTTTGGATGAATCTGT  346
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAGATGGC-TTTTTTTTTTTAAAGAGCCCTTTGGATGAATCTGT  307

seq1  GGACAGTCTCTTTCCTTGGTCAGTTCATTCATGAATTGCAACAGTGACTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTCTCTTTCCTTGGTCAGTTCATTCATGAATTGCAACAGTGACTG  357

seq1  GATTAGAGACAGGGCTGGATGTGGTCCAACTTCTCAGTAATGATAAACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGACAGGGCTGGATGTGGTCCAACTTCTCAGTAATGATAAACAG  407

seq1  ATTATGTCTGAAGGCATGTTGTCTCAATACTACTGAGCTAAACACACTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCTGAAGGCATGTTGTCTCAATACTACTGAGCTAAACACACTTC  457

seq1  TAAAAAGCCTCAGTATATTTAGCAGATTCTTTGCTAGATTGGAGCCTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCTCAGTATATTTAGCAGATTCTTTGCTAGATTGGAGCCTTTT  507

seq1  ATAACAGTTATTTTTAGAATTCAGTTTTTAAAATATGAATTAAACTCGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTTATTTTTAGAATTCAGTTTTTAAAATATGAATTAAACTCGTA  557

seq1  TTCAAATTTAGTAAGAAATAGAGAGAATATTGTATTGATTAGGGAACTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTAGTAAGAAATAGAGAGAATATTGTATTGATTAGGGAACTAA  607

seq1  CAGTAGTGATCAAAAGCTAATTAGGGGCTGGGGATATAGCTCAGTGGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGATCAAAAGCTAATTAGGGGCTGGGGATATAGCTCAGTGGTGG  657

seq1  GATGCTTGCTTGCCTGGAGTGTGTGAGGCTCTGGGTTCAGCGTCCAGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGCTTGCCTGGAGTGTGTGAGGCTCTGGGTTCAGCGTCCAGTGT  707

seq1  TAAAAAACAGAGCAAGTAAACATAGAAACAGAGATCCCAAGATTTTTAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAGAGCAAGTAAACATAGAAACAGAGATCCCAAGATTTTTAGA  757

seq1  ATCTACATTTTGTTAGTCAACTGCTTTCTGTGGGTTAACTTTCCATGCCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATTTTGTTAGTCAACTGCTTTCTGTGGGTTAACTTTCCATGCCA  807

seq1  GATCTCCATTTCTTTCCTCGTAGGGTCTCAAAGGACATCCAGGGCTCCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCATTTCTTTCCTCGTAGGGTCTCAAAGGACATCCAGGGCTCCCC  857

seq1  GGACTCCGCGGCGAACACGTAAGTGCTTTCTGGCATTCTCTGGTCGCTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCGCGGCGAACACGTAAGTGCTTTCTGGCATTCTCTGGTCGCTAA  907

seq1  GGTGGGCATAAAGCATCTCGCCGGGGAGATAATTCCTCTCTCGCCACTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCATAAAGCATCTCGCCGGGGAGATAATTCCTCTCTCGCCACTGC  957

seq1  CATGTTTCCTCCGAGTTATTCTCATTTTATATAGAGCAAAAAGAACAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCCTCCGAGTTATTCTCATTTTATATAGAGCAAAAAGAACAGCT  1007

seq1  TTTAATCGACTAGCTATAGATTATCAGCAAAATTATGAACTAGCAACGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCGACTAGCTATAGATTATCAGCAAAATTATGAACTAGCAACGTT  1057

seq1  TTAGTCTTCTTGCTTTCTCTTTTCCTGCTGTGTTCAGAACAGTGGGTCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTCTTGCTTTCTCTTTTCCTGCTGTGTTCAGAACAGTGGGTCTT  1107

seq1  AAACCTCTGATTCACAAGTCTCTTCGAGCATTCTGTAATGACTACAGGCC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTGATTCACAAGTCTCTTCGAGCATTCTGTAATGACTACAGGCC  1157

seq1  CTCTCCAAGAAAATATACATATCTATGCGCACCGCTGACCTTCAACTTTA  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGAAAATATACATATCTATGCGCACCGCTGACCTTCAACTTTA  1207

seq1  GAATTC  1252
      ||||||
seq2  GAATTC  1213