BAC Information

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BAC

Clone NameB6Ng01-060C16
Chromosome3 (Build37)
Map Location 132,786,372 - 132,921,615
singlet/doubletdoublet
Overlap gene9130221D24Rik
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C16.bB6Ng01-060C16.g
ACCDH881223DH881224
length1,134916
definitionDH881223|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C16, 5' end.DH881224|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,920,455 - 132,921,615)(132,786,372 - 132,787,126)
sequence
gaattccatataatcactggaacaggaaagaaaggagagccctggggctc
actgatcagactgtccagctgaatcagtgagctgcagagctggtgagatg
ccacagctaaaaaaaaaaatgtgtagagcaattgagaaaggcacctaaca
tcagcctctggccctcacacacacgtgcttacacatgtgcacatgaacct
gcacatagatgtgtacacacaggaacacacacaaacacaaacaccaaaga
aatacacagaagactataatcaaagcttgtggcatcagtgtaaaaaggac
caatgtgttcttattaaagcctgaaaagttacattttcaatggcacatgc
tatgaacacgtgttatggcatactgatgttgatccattttgttaaaacgg
tttaactaaagcacaattcttaaagaagaagacaacataaaaagaagaaa
acggagggctgaagatatggctcagcagctgaaggtgcatcctgctctct
cagaggaaagaattgagctcctagcacccactctgggacacacttcctgc
aacttcagctccaggggatccagggtcctctctggcccccaagagtacct
gcacacatgtagcatacagacacacacacacacacacacacacacacaca
cacacacggaagatcatgtaataggtaatgtatattgtacatcgcaggaa
cagggatgtcaaatgaggatcttggcttccctgtgatatgtgtatactgg
gaccaagaaactggtggttgaatgtttaattagaaataagggcaacacag
catgaagactaacaaaaagctgaaagtaggaagattacaaggggaggaat
gagataagtaaataagtctaaagtaagaaagatagcaaggtgaaaaatga
ttcacttctcggagaagtggctttgtaatatttatcaagtattaaaatat
tatatctcttgacccagtattctacatctcagaagatacctaagggaaaa
tgctgaaatctgaaaatagtcacgcttcactccactctgtatgtagttta
agggaaaagaaatcggaatgctgcttatgtatatcttgaatgataacatc
gcttacgatgaagcggtattaaaaaatttttttt
gaattccctactacctaaataagacttaaataatgctatttataaagggc
agcatggcaaactctgtaaagattccctttataacctgtgacccctcaat
atatttattaatttttcttacaaatgtatttataaaagtatagaaaagga
gatgaagaatactcctggttttacacttttaaacacaaaatattttcagt
atctttgcctgggttagtaattatgtatatgacttattctataaaatggg
tgtgatgttgggagccgcgcccacattcgccgttacaagatggcgctgac
agctgtgttctaagtggtaaacaaataatctgcgcatatgccgagggtgg
ttctctactccatgtgctctgccttccccgtgacgtcaactcggccgatg
ggctgcagccaatcagggagtgacacgtccgaggcgaaggagaatgctcc
ttaagagggacggggtttcgttttctctctctcttgcttcttgctctctt
gcttcctgcaccctggctcctgaagatgtaagaataaagctttgccgcag
aagattctggtctgtggtgttcttcctggccggtcgtgagaacgcgtcta
ataacaattggtgccgaattccgggacgagaaaaaaactcgggactggcg
caaggaagatccctcattccagaaccagaactgcgggtcgcggtaataaa
ggttcccgtaaagcagactgttaagaaggattcaactgtatgaattcaga
acttttcagctggggaacgagagtatcagtgagtacagcttacgaggtaa
gtctgatcttgaactttctaacgaaattcaagacagtcttcagaagtaaa
gtggaatatgtttggccttgaattttttctggtgtaggagtccctttgtt
tcttttcacatgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132920455_132921615
seq2: B6Ng01-060C16.b_46_1179 (reverse)

seq1  AAAAAAAATTTTTTTTTTAAATAACCGCTTTCATCCTGTAAGCTGATGTT  50
      ||||||||||||||     ||| ||||| ||||||  |||||| ||||  
seq2  AAAAAAAATTTTTT-----AAT-ACCGC-TTCATC--GTAAGC-GATG--  38

seq1  TTATCATTTTCAAGATTATACATTAAGGCAGCCATTTCCGATTTTTTTTT  100
      ||||||  ||||||| |||||||  | |||||   ||||||||| |||| 
seq2  TTATCA--TTCAAGA-TATACAT--AAGCAGC--ATTCCGATTTCTTTTC  81

seq1  CCCTTTTAAACTACATACAGAGT-GAGTGAAGCGTGGCTATTTTTCAGAT  149
      ||   |||||||||||||||||| |||||||||||| ||| |||||||||
seq2  CC---TTAAACTACATACAGAGTGGAGTGAAGCGTGACTA-TTTTCAGAT  127

seq1  TTCAGCATTTTTCCCTTAGGTTATCTTCTGAGATGTAGAATAACTGGGTC  199
      ||||||| |||||||||||| |||||||||||||||||||| ||||||||
seq2  TTCAGCA-TTTTCCCTTAGG-TATCTTCTGAGATGTAGAAT-ACTGGGTC  174

seq1  AAGGGATATTAATATTTTAATTACTTGATAAATATTACAAAGCCACTTCT  249
      ||| |||| ||||||||||| |||||||||||||||||||||||||||||
seq2  AAGAGATA-TAATATTTTAA-TACTTGATAAATATTACAAAGCCACTTCT  222

seq1  CCGAGAAGTTGAATCATTTTTCACCTTGCTATCTTTCTTACTTTAGGCTT  299
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  CCGAGAAG-TGAATCATTTTTCACCTTGCTATCTTTCTTACTTTAGACTT  271

seq1  A-TTACTTATCTCATTTCCTCCCTTGTAATCTTCCTACTTTCAGCTTTTT  348
      | |||||||||||||| |  ||||||||||||||||||||||||||||||
seq2  ATTTACTTATCTCATTCCTCCCCTTGTAATCTTCCTACTTTCAGCTTTTT  321

seq1  GTTAGTCTTCATGCTGTGTTGCCCTTATTTCTAATTAAACATTCAACCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTTCATGCTGTGTTGCCCTTATTTCTAATTAAACATTCAACCAC  371

seq1  CAGTTTCTTGGTCCCAGTATACACATATCACAGGGAAGCCAAGATCCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTGGTCCCAGTATACACATATCACAGGGAAGCCAAGATCCTCA  421

seq1  TTTGACATCCCTGTTCCTGCGATGTACAATATACATTACCTATTACATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATCCCTGTTCCTGCGATGTACAATATACATTACCTATTACATGA  471

seq1  TCTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTAT  521

seq1  GCTACATGTGTGCAGGTACTCTTGGGGGCCAGAGAGGACCCTGGATCCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGTGTGCAGGTACTCTTGGGGGCCAGAGAGGACCCTGGATCCCC  571

seq1  TGGAGCTGAAGTTGCAGGAAGTGTGTCCCAGAGTGGGTGCTAGGAGCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGAAGTTGCAGGAAGTGTGTCCCAGAGTGGGTGCTAGGAGCTCA  621

seq1  ATTCTTTCCTCTGAGAGAGCAGGATGCACCTTCAGCTGCTGAGCCATATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCTCTGAGAGAGCAGGATGCACCTTCAGCTGCTGAGCCATATC  671

seq1  TTCAGCCCTCCGTTTTCTTCTTTTTATGTTGTCTTCTTCTTTAAGAATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCTCCGTTTTCTTCTTTTTATGTTGTCTTCTTCTTTAAGAATTG  721

seq1  TGCTTTAGTTAAACCGTTTTAACAAAATGGATCAACATCAGTATGCCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTTAAACCGTTTTAACAAAATGGATCAACATCAGTATGCCATA  771

seq1  ACACGTGTTCATAGCATGTGCCATTGAAAATGTAACTTTTCAGGCTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTTCATAGCATGTGCCATTGAAAATGTAACTTTTCAGGCTTTAA  821

seq1  TAAGAACACATTGGTCCTTTTTACACTGATGCCACAAGCTTTGATTATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACATTGGTCCTTTTTACACTGATGCCACAAGCTTTGATTATAG  871

seq1  TCTTCTGTGTATTTCTTTGGTGTTTGTGTTTGTGTGTGTTCCTGTGTGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGTATTTCTTTGGTGTTTGTGTTTGTGTGTGTTCCTGTGTGTA  921

seq1  CACATCTATGTGCAGGTTCATGTGCACATGTGTAAGCACGTGTGTGTGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTATGTGCAGGTTCATGTGCACATGTGTAAGCACGTGTGTGTGAG  971

seq1  GGCCAGAGGCTGATGTTAGGTGCCTTTCTCAATTGCTCTACACATTTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGCTGATGTTAGGTGCCTTTCTCAATTGCTCTACACATTTTTT  1021

seq1  TTTTTAGCTGTGGCATCTCACCAGCTCTGCAGCTCACTGATTCAGCTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCTGTGGCATCTCACCAGCTCTGCAGCTCACTGATTCAGCTGGA  1071

seq1  CAGTCTGATCAGTGAGCCCCAGGGCTCTCCTTTCTTTCCTGTTCCAGTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGATCAGTGAGCCCCAGGGCTCTCCTTTCTTTCCTGTTCCAGTGA  1121

seq1  TTATATGGAATTC  1161
      |||||||||||||
seq2  TTATATGGAATTC  1134

seq1: chr3_132786372_132787126
seq2: B6Ng01-060C16.g_66_820

seq1  GAATTCCCTACTACCTAAATAAGACTTAAATAATGCTATTTATAAAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTACTACCTAAATAAGACTTAAATAATGCTATTTATAAAGGGC  50

seq1  AGCATGGCAAACTCTGTAAAGATTCCCTTTATAACCTGTGACCCCTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCAAACTCTGTAAAGATTCCCTTTATAACCTGTGACCCCTCAAT  100

seq1  ATATTTATTAATTTTTCTTACAAATGTATTTATAAAAGTATAGAAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTAATTTTTCTTACAAATGTATTTATAAAAGTATAGAAAAGGA  150

seq1  GATGAAGAATACTCCTGGTTTTACACTTTTAAACACAAAATATTTTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAATACTCCTGGTTTTACACTTTTAAACACAAAATATTTTCAGT  200

seq1  ATCTTTGCCTGGGTTAGTAATTATGTATATGACTTATTCTATAAAATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCCTGGGTTAGTAATTATGTATATGACTTATTCTATAAAATGGG  250

seq1  TGTGATGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTGGGAGCCGCGCCCACATTCGCCGTTACAAGATGGCGCTGAC  300

seq1  AGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATATGCCGAGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATATGCCGAGGGTGG  350

seq1  TTCTCTACTCCATGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACTCCATGTGCTCTGCCTTCCCCGTGACGTCAACTCGGCCGATG  400

seq1  GGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGCCAATCAGGGAGTGACACGTCCGAGGCGAAGGAGAATGCTCC  450

seq1  TTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGGACGGGGTTTCGTTTTCTCTCTCTCTTGCTTCTTGCTCTCTT  500

seq1  GCTTCCTGCACCCTGGCTCCTGAAGATGTAAGAATAAAGCTTTGCCGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCACCCTGGCTCCTGAAGATGTAAGAATAAAGCTTTGCCGCAG  550

seq1  AAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGGTCTGTGGTGTTCTTCCTGGCCGGTCGTGAGAACGCGTCTA  600

seq1  ATAACAATTGGTGCCGAATTCCGGGACGAGAAAAAAACTCGGGACTGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTGGTGCCGAATTCCGGGACGAGAAAAAAACTCGGGACTGGCG  650

seq1  CAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGATCCCTCATTCCAGAACCAGAACTGCGGGTCGCGGTAATAAA  700

seq1  GGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTATGAATTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTATGAATTCAGA  750

seq1  ACTTT  755
      |||||
seq2  ACTTT  755