BAC Information

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BAC

Clone NameB6Ng01-060E16
Chromosome3 (Build37)
Map Location 128,123,921 - 128,239,755
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060E16.bB6Ng01-060E16.g
ACCDH881304DH881305
length1,1041,205
definitionDH881304|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E16, 5' end.DH881305|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,123,921 - 128,125,037)(128,238,526 - 128,239,755)
sequence
gaattccagagctgcacttgagatgggttttgaagttagaacagagcaag
gaattggtgacaactgtcagaaaatctaaacaagcccttgtaaaatgagg
actagagcaaatcacatatccagagcctttcctctactgtgcctttgtat
cgctttccttaactttcccttttttcagcttccaattgtcaggggaaaca
cagttgttagatggacaggattgaacaatcctaagtgtaattgtattatt
catcagatgtaattgtcatctctgagacttgctgaatgagctcacccctt
cctagttatttctgatatccagctggctatttcaactcaactcttctggc
tcaaactcccatccaagctgatttattcaatctgggcttctctcagcttc
tcaccaaattgctctgcttgacctgaaactaactctggcaacttgttcca
gtcttctggctccttcttattctctggcttaactgcctctgctgacctgc
cctgaactgcgtgaagtcagaagttaattcaactccactgtaatactctc
actgcactgactcccaactggctcaactccaaactccctgacaacagatt
ctctcccccgacctgctcttaaatagcatttctcataactctgactcatt
ctgtcaaacctttctctgctttgtcatgttgtctgcccctcaacagtatg
tcattttttttggaattaaaggtgttactaaactgttccagcagaagata
ttcaaggtgtatactaagggcatatatacactcaagccaaatggcacaga
cctagaaggtctatgaacacaatcagagctgctgtgttgttgctggatta
aaatttcttgacaccaggtacttatcaacgccagagatgtgactgtgttt
tcttccacaccatctaaccgctgcattaaagaatgtccatttcttgccca
gacattactgtgtatagcatgctcatacttcatgtacagttcagttaagc
acctagatgtatagaggaggcagtatttaccattctaggatggtctctgt
tttaatagactgctcgaaagaatcaatatgactgaagaactatggagaag
actg
gaattcactgcctagttttctgtttgttgttttgatttggtttatattgt
cttggcagtaactaataatatgactttaatgttcaggagtttagaaaatt
aagagtgaatttgaggcaatctttgatttatgttatgctctatttctccc
tgagaaaataaaatttaagaaaacaataaaattatacaaagtggcaaaag
gggtaaatataatgcacttaatagaatcaaaatagaagaattgttttaga
atattttttttctgccacacttaaatcctgggtataaaaacatggttaga
aatggaatctttaaaagagaagttgaaatatgaattctagtcttaaaaat
atgttcagactagtttcttgggaacggatcttgttttagatgggttaagt
gttattatgccttgctactaaaggcagattcaacaaataataagtcacta
tagctagatcactgcaggaatataacttgttatcattcttatgcacctaa
tatctttttgcttcatgaaacataggcttcttataatgtatttgttaaag
aaataattttatttcctatcagtactctccaaggacaaagacttgtccaa
cttgatgacaatattattttctagacatctcacgtttgatttcaatgtgc
tgtcaatcatctgtcttcctctttttgtggtctctatagaatattttatt
ggtgaaaatcataaaaaaattaatgtggccacatttacaagaaaacaaag
tgatcccatgaacttccaaatcaatctttggtgtcctgatatgagaataa
tgtttaaatagagagcaagtgttatggccacaactgaacagtcactgtgt
gtggtaacctgataccctttgtctcagctccaaggcttttcttctaagtc
ttttgagaaggtggtaacattcttctccaagcagcaaatttctatacagg
ttgattttaagttaataatgctttggagactaacactactatccagtcca
tggaatcctattaaaacttatttttcaagtatctatgatctcatcatgaa
gtcaagttctttttctcacatctcctccatcaggactgtcatctttgcaa
aaaacctcttcattcctcggagtggcaattgtgacttgatcttggcaatg
aagctcattcagaaagcctttgcacacctggtcggcaatcaggggtccac
cagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128123921_128125037
seq2: B6Ng01-060E16.b_45_1148

seq1  GAATTCCAGAGCTGCACTTGAGATGGGTTTTGAAGTTAGAACAGAGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCTGCACTTGAGATGGGTTTTGAAGTTAGAACAGAGCAAG  50

seq1  GAATTGGTGACAACTGTCAGAAAATCTAAACAAGCCCTTGTAAAATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTGACAACTGTCAGAAAATCTAAACAAGCCCTTGTAAAATGAGG  100

seq1  ACTAGAGCAAATCACATATCCAGAGCCTTTCCTCTACTGTGCCTTTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGCAAATCACATATCCAGAGCCTTTCCTCTACTGTGCCTTTGTAT  150

seq1  CGCTTTCCTTAACTTTCCCTTTTTTCAGCTTCCAATTGTCAGGGGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCCTTAACTTTCCCTTTTTTCAGCTTCCAATTGTCAGGGGAAACA  200

seq1  CAGTTGTTAGATGGACAGGATTGAACAATCCTAAGTGTAATTGTATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTAGATGGACAGGATTGAACAATCCTAAGTGTAATTGTATTATT  250

seq1  CATCAGATGTAATTGTCATCTCTGAGACTTGCTGAATGAGCTCACCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATGTAATTGTCATCTCTGAGACTTGCTGAATGAGCTCACCCCTT  300

seq1  CCTAGTTATTTCTGATATCCAGCTGGCTATTTCAACTCAACTCTTCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTATTTCTGATATCCAGCTGGCTATTTCAACTCAACTCTTCTGGC  350

seq1  TCAAACTCCCATCCAAGCTGATTTATTCAATCTGGGCTTCTCTCAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCCCATCCAAGCTGATTTATTCAATCTGGGCTTCTCTCAGCTTC  400

seq1  TCACCAAATTGCTCTGCTTGACCTGAAACTAACTCTGGCAACTTGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAATTGCTCTGCTTGACCTGAAACTAACTCTGGCAACTTGTTCCA  450

seq1  GTCTTCTGGCTCCTTCTTATTCTCTGGCTTAACTGCCTCTGCTGACCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGGCTCCTTCTTATTCTCTGGCTTAACTGCCTCTGCTGACCTGC  500

seq1  CCTGAACTGCGTGAAGTCAGAAGTTAATTCAACTCCACTGTAATACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTGCGTGAAGTCAGAAGTTAATTCAACTCCACTGTAATACTCTC  550

seq1  ACTGCACTGACTCCCAACTGGCTCAACTCCAAACTCCCTGACAACAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTGACTCCCAACTGGCTCAACTCCAAACTCCCTGACAACAGATT  600

seq1  CTCTCCCCCGACCTGCTCTTAAATAGCATTTCTCATAACTCTGACTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCGACCTGCTCTTAAATAGCATTTCTCATAACTCTGACTCATT  650

seq1  CTGTCAAACCTTTCTCTGCTTTGTCATGTTGTCTGCCCCTCAACAGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAACCTTTCTCTGCTTTGTCATGTTGTCTGCCCCTCAACAGTATG  700

seq1  TCATTTTTTTTGGAATTAAAGGTGTTACTAAACTGTTCCAGCAGAAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTTGGAATTAAAGGTGTTACTAAACTGTTCCAGCAGAAGATA  750

seq1  TTCAAGGTGTATACTAAGGGCATATATACACTCAAGCCAAATGGCACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGTATACTAAGGGCATATATACACTCAAGCCAAATGGCACAGA  800

seq1  CCTAGAAGGTCTATGAACACAATCAGAGCTGCTGTGTTGTTGCTGGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGGTCTATGAACACAATCAGAGCTGCTGTGTTGTTGCTGGATTA  850

seq1  AAATTTCTTGACACCAGGTACTTATCAACGCCAGAGATGTGACTGTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTGACACCAGGTACTTATCAACGCCAGAGATGTGACTGTGTTT  900

seq1  TCTTCCACACCATCTAACCGCTGCAATTAAAGAAGGTCCATTTCTTGCCC  950
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  TCTTCCACACCATCTAACCGCTGC-ATTAAAGAATGTCCATTTCTTGCCC  949

seq1  AGACATTACTGTGTATAGCATGCTCATACTTCATGTACAGTTCAGTTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTACTGTGTATAGCATGCTCATACTTCATGTACAGTTCAGTTAAG  999

seq1  CCACCTAGATGTATAGAAGGGAGGCAGTATTTACCATTCTAAGGATGGTC  1050
       ||||||||||||||||  ||||||||||||||||||||| |||||||||
seq2  -CACCTAGATGTATAGA--GGAGGCAGTATTTACCATTCT-AGGATGGTC  1045

seq1  TCTGTTTATATAGACTGCTCAGAAAAGGAAATCAAATATGACTGATAGAT  1100
      |||||||  ||||||||||| ||||    |||| ||||||||||| ||| 
seq2  TCTGTTTTAATAGACTGCTC-GAAA---GAATC-AATATGACTGA-AGA-  1088

seq1  ACTATGGAGGAAGACTG  1117
      |||||||| ||||||||
seq2  ACTATGGA-GAAGACTG  1104

seq1: chr3_128238526_128239755
seq2: B6Ng01-060E16.g_67_1271 (reverse)

seq1  TGCTGGTGGAAAACACTGTACTGCCCAGTACAGATGTAGCAAAAGGCTTT  50
      |||||||||  | | ||| | ||||  |  ||| ||| || |||||||||
seq2  TGCTGGTGG--ACCCCTG-ATTGCC--GACCAGGTGT-GC-AAAGGCTTT  43

seq1  CTGAATAGACTTCATTTGCCCAAGAATCAAGGTCAACAACTGACAACCTC  100
      ||||||   |||||||   ||||| ||||| ||| |||| || ||  |||
seq2  CTGAATGAGCTTCATT--GCCAAG-ATCAA-GTC-ACAATTGCCA--CTC  86

seq1  AGAGAAATGAAGAGGTTTTTTTTGCAGAGATGAACAGTTACCTGATGGAA  150
       ||| ||||||||||  ||||||||| ||||| |||||  ||||||||| 
seq2  CGAGGAATGAAGAGG--TTTTTTGCAAAGATG-ACAGT--CCTGATGGAG  131

seq1  GAGGATGTGGGAAAAAGGAACTTGGCATCATTGATGAGATCAATAGATAC  200
      || |||||| |||||| ||||||| | ||| |||||||||| ||||||||
seq2  GA-GATGTGAGAAAAA-GAACTTGACTTCA-TGATGAGATC-ATAGATAC  177

seq1  TTTTAAAAAATAAGTTTTAATAGGATTCCATGGACTGGATAGTAGTTGTT  250
        || |||||||||||||||||||||||||||||||||||||||| ||||
seq2  --TTGAAAAATAAGTTTTAATAGGATTCCATGGACTGGATAGTAG-TGTT  224

seq1  AGTCTTCCAAAGCATTATTAACTTAAAATCAACCTGTATAGAAATTTGCT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTC-TCCAAAGCATTATTAACTTAAAATCAACCTGTATAGAAATTTGCT  273

seq1  GCTTGGAGAAGAATGT--ACACCTTCTCAAAAGACCTTAGAAG-AAAGCC  347
      ||||||||||||||||   ||||||||||||||| |||||||| ||||||
seq2  GCTTGGAGAAGAATGTTACCACCTTCTCAAAAGA-CTTAGAAGAAAAGCC  322

seq1  TTGGAGCTGAGACAAAGGGTATCAGGTTACCACACACAGTGACTGTTCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTGAGACAAAGGGTATCAGGTTACCACACACAGTGACTGTTCAG  372

seq1  TTGTGGCCATAACACTTGCTCTCTATTTAAACATTATTCTCATATCAGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCATAACACTTGCTCTCTATTTAAACATTATTCTCATATCAGGA  422

seq1  CACCAAAGATTGATTTGGAAGTTCATGGGATCACTTTGTTTTCTTGTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGATTGATTTGGAAGTTCATGGGATCACTTTGTTTTCTTGTAAA  472

seq1  TGTGGCCACATTAATTTTTTTATGATTTTCACCAATAAAATATTCTATAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCACATTAATTTTTTTATGATTTTCACCAATAAAATATTCTATAG  522

seq1  AGACCACAAAAAGAGGAAGACAGATGATTGACAGCACATTGAAATCAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAAAAAGAGGAAGACAGATGATTGACAGCACATTGAAATCAAAC  572

seq1  GTGAGATGTCTAGAAAATAATATTGTCATCAAGTTGGACAAGTCTTTGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGTCTAGAAAATAATATTGTCATCAAGTTGGACAAGTCTTTGTC  622

seq1  CTTGGAGAGTACTGATAGGAAATAAAATTATTTCTTTAACAAATACATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAGTACTGATAGGAAATAAAATTATTTCTTTAACAAATACATTA  672

seq1  TAAGAAGCCTATGTTTCATGAAGCAAAAAGATATTAGGTGCATAAGAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCCTATGTTTCATGAAGCAAAAAGATATTAGGTGCATAAGAATG  722

seq1  ATAACAAGTTATATTCCTGCAGTGATCTAGCTATAGTGACTTATTATTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGTTATATTCCTGCAGTGATCTAGCTATAGTGACTTATTATTTG  772

seq1  TTGAATCTGCCTTTAGTAGCAAGGCATAATAACACTTAACCCATCTAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGCCTTTAGTAGCAAGGCATAATAACACTTAACCCATCTAAAA  822

seq1  CAAGATCCGTTCCCAAGAAACTAGTCTGAACATATTTTTAAGACTAGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCGTTCCCAAGAAACTAGTCTGAACATATTTTTAAGACTAGAAT  872

seq1  TCATATTTCAACTTCTCTTTTAAAGATTCCATTTCTAACCATGTTTTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTCAACTTCTCTTTTAAAGATTCCATTTCTAACCATGTTTTTAT  922

seq1  ACCCAGGATTTAAGTGTGGCAGAAAAAAAATATTCTAAAACAATTCTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGATTTAAGTGTGGCAGAAAAAAAATATTCTAAAACAATTCTTCT  972

seq1  ATTTTGATTCTATTAAGTGCATTATATTTACCCCTTTTGCCACTTTGTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTCTATTAAGTGCATTATATTTACCCCTTTTGCCACTTTGTAT  1022

seq1  AATTTTATTGTTTTCTTAAATTTTATTTTCTCAGGGAGAAATAGAGCATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATTGTTTTCTTAAATTTTATTTTCTCAGGGAGAAATAGAGCATA  1072

seq1  ACATAAATCAAAGATTGCCTCAAATTCACTCTTAATTTTCTAAACTCCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATCAAAGATTGCCTCAAATTCACTCTTAATTTTCTAAACTCCTG  1122

seq1  AACATTAAAGTCATATTATTAGTTACTGCCAAGACAATATAAACCAAATC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAAAGTCATATTATTAGTTACTGCCAAGACAATATAAACCAAATC  1172

seq1  AAAACAACAAACAGAAAACTAGGCAGTGAATTC  1230
      |||||||||||||||||||||||||||||||||
seq2  AAAACAACAAACAGAAAACTAGGCAGTGAATTC  1205