BAC Information

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BAC

Clone NameB6Ng01-060G09
Chromosome3 (Build37)4 (Build37)
Map Location 41,059,406 - 41,059,73782,262,502 - 82,263,489
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G09.bB6Ng01-060G09.g
ACCDH881380DH881381
length957983
definitionDH881380|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G09, 5' end.DH881381|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,406 - 41,059,737)(82,262,502 - 82,263,489)
sequence
gaattctttttttagctctgaaccccactttttaatggggttatttgaat
ttctggagtccagcttcttgagctctttgtatatattggattttagtccc
ctatcagatttaggattggtaaaaatctgttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgtttaggaatttttcccctgtgcccatatctttgaggcttttccccac
tttctcctctattaatttcagtgtctctggttttggaagtcagtctggag
gctcctcagaaaattggacataatactaccggaagatccagcaatacctc
tcttgggcatatacccagaagaagttccaactggtaataagaacacatgc
tccactatgtttatagcagccttatctataatagccagaagctggaaaga
actcagatgtccctcaacagaagaatggatacagaaaatgtggtacattt
atacaatggagtactactcagctattaaaaacaaggaatttatgaaattc
ttggacaaatggatgtatctggagaatatcatccttagtgaggtatccca
attagatatgcactcacttataagtggatattagcccagaaacatagaac
acccaaggtagaatttgcaaaacacaagaaaatcaagaagagggaagacc
attgggtggatacttcattcctccttagaatagggaacaaaatacccatg
aaaggagttacagagacaaagtttggagctaagacaaaggatggactatc
cagagactaccccacccggggatccatcccataatcagccatccaaccca
gacactattgcttatgccagcaagattttgatgaagggactctggtatag
ctgtctc
gaattcatttcctcttttaacttgggccttaatttattctgaaaacgaat
ttgacataaaattgtttttaagagtgaaaacttgacacgtttttacaaca
gcaagaaggaactctagcgtcaacaagccgttgatgaaagtaaccattga
ttttcatggtgttcagtcatggaaaccacatgaagaggcgaaagctggga
ctgcaaacgtgggtacggatgccgtctctctggggatgctgatttgggct
gcccttggttttggagtctacagtgtcatattttttaaatttctgaaatc
tgtggtgtggagtctttttcctaacataagctcagtctggttgttctact
caacgagggccaggtggtacctgagggcattcagtgatcttggaaggata
tgggtatatgttaccgctgtagccctactaagttctagtggtgtctttct
gtatatgtttatgtagcaggtgatttttttttttaacttctcacagccac
cttgcactcttccccccttcccccatgtgagagtgtagacaacttggctc
acttaagtaggtttcaccggcagggagccaatcatgactcgaagtccccc
ttccggtaaagacaacgaaggggtaatttgaaatgctgtccggttaggca
accgttccaactgcgagtgtttaggctcaaagtcaggcccaagatcacca
tatttttaccatttcgccattattttcatttaccgcgaggcaactgtggt
ggtttggatgagacacccccaagttcttcggcttttagcgaagcagtacc
cagttggtgaacctgtttggttagatttaggagggaaaccacactggggt
gagccctgtggttttaagctcaggtgccattctgagctggctctctctct
ggttctggttttgttcaaattgtgagctctcagctgttcttgcctctgta
ctaccttaatttctctgccacgtggcggtggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059406_41059737
seq2: B6Ng01-060G09.b_45_377 (reverse)

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  50
      ||||||||||||||||||| | ||||||||||||||||||||||||||  
seq2  AAAACCAGAGACACTGAAATTAATAGAGGAGAAAGTGGGGAAAAGCCTCA  50

seq1  AAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGT  100
      ||||||||| ||||||||||||||||||  | ||||||||||||||||||
seq2  AAGATATGGGCACAGGGGAAAAATTCCTAAACAGAACAGCAATGGCTTGT  100

seq1  GCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTT  150
      ||||||||||  ||||| ||||||||||||||||| ||| ||||||||||
seq2  GCTGTAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTT  150

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATT  199
      ||| |||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATT  200

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  249
      |||||  ||| |||||| |||||||||| ||||||||||||| |||||||
seq2  GGGAACAGATTTTTACCAATCCTAAATCTGATAGGGGACTAAAATCCAAT  250

seq1  ATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCAT  299
      |||||  |||| ||||||||| |||| |||||||| ||||||||||||||
seq2  ATATACAAAGAGCTCAAGAAGCTGGACTCCAGAAATTCAAATAACCCCAT  300

seq1  TAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  332
      |||||| ||||| ||||||||||| ||||||||
seq2  TAAAAAGTGGGGTTCAGAGCTAAAAAAAGAATT  333

seq1: chr4_82262502_82263489
seq2: B6Ng01-060G09.g_69_1051

seq1  GAATTCATTTCCTCTTTTAACTTGGGCCTTAATTTATTCTGAAAACGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTCTTTTAACTTGGGCCTTAATTTATTCTGAAAACGAAT  50

seq1  TTGACATAAAATTGTTTTTAAGAGTGAAAACTTGACACGTTTTTACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATAAAATTGTTTTTAAGAGTGAAAACTTGACACGTTTTTACAACA  100

seq1  GCAAGAAGGAACTCTAGCGTCAACAAGCCGTTGATGAAAGTAACCATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGGAACTCTAGCGTCAACAAGCCGTTGATGAAAGTAACCATTGA  150

seq1  TTTTCATGGTGTTCAGTCATGGAAACCACATGAAGAGGCGAAAGCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGGTGTTCAGTCATGGAAACCACATGAAGAGGCGAAAGCTGGGA  200

seq1  CTGCAAACGTGGGTACGGATGCCGTCTCTCTGGGGATGCTGATTTGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACGTGGGTACGGATGCCGTCTCTCTGGGGATGCTGATTTGGGCT  250

seq1  GCCCTTGGTTTTGGAGTCTACAGTGTCATATTTTTTAAATTTCTGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGTTTTGGAGTCTACAGTGTCATATTTTTTAAATTTCTGAAATC  300

seq1  TGTGGTGTGGAGTCTTTTTCCTAACATAAGCTCAGTCTGGTTGTTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGGAGTCTTTTTCCTAACATAAGCTCAGTCTGGTTGTTCTACT  350

seq1  CAACGAGGGCCAGGTGGTACCTGAGGGCATTCAGTGATCTTGGAAGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAGGGCCAGGTGGTACCTGAGGGCATTCAGTGATCTTGGAAGGATA  400

seq1  TGGGTATATGTTACCGCTGTAGCCCTACTAAGTTCTAGTGGTGTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATATGTTACCGCTGTAGCCCTACTAAGTTCTAGTGGTGTCTTTCT  450

seq1  GTATATGTTTATGTAGCAGGTGATTTTTTTTTTTAACTTCTCACAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTTATGTAGCAGGTGATTTTTTTTTTTAACTTCTCACAGCCAC  500

seq1  CTTGCACTCTTCCCCCCTTCCCCCATGTGAGAGTGTAGACAACTTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTCTTCCCCCCTTCCCCCATGTGAGAGTGTAGACAACTTGGCTC  550

seq1  ACTTAAGTAGGTTTCACCGGCAGGGAGCCAATCATGACTCGAAGTCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTAGGTTTCACCGGCAGGGAGCCAATCATGACTCGAAGTCCCCC  600

seq1  TTCCGGTAAAGACAACGAAGGGGTAATTTGAAATGCTGTCCGGTTAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGTAAAGACAACGAAGGGGTAATTTGAAATGCTGTCCGGTTAGGCA  650

seq1  ACCGTTCCAACTGCGAGTGTTTAGGCTCAAAGTCAGGCCCAAGATCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTCCAACTGCGAGTGTTTAGGCTCAAAGTCAGGCCCAAGATCACCA  700

seq1  TATTTTTACCATTTCGCCATTATTTTCATTTACCGCGAGGCAACTGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTACCATTTCGCCATTATTTTCATTTACCGCGAGGCAACTGTGGT  750

seq1  GGTTTGGATGAGACACCCCCAAGTTCTTCGGCTTTTAGCGAAGCAGTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGATGAGACACCCCCAAGTTCTTCGGCTTTTAGCGAAGCAGTACC  800

seq1  CAGTTGGTGAACCTGTTTGGTTAGATTTAGGAGGGAAACCACACTGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTGAACCTGTTTGGTTAGATTTAGGAGGGAAACCACACTGGGGT  850

seq1  GAGCCCTGTGGTTTTAAAGCTCAGGTGCCATTCTGAGCTGGCTCTCTCTC  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGTGGTTTT-AAGCTCAGGTGCCATTCTGAGCTGGCTCTCTCTC  899

seq1  TGGTTCCTGTTTTTGGTTCAAATTGTGAGCTCTCAGCTGTTTCTGCCTCT  950
      ||||||  |||||  ||||||||||||||||||||||||||  |||||||
seq2  TGGTTCTGGTTTT--GTTCAAATTGTGAGCTCTCAGCTGTTCTTGCCTCT  947

seq1  GTTACTACCTTACTTTCCCTGCCACGGTGGCGGTGGAT  988
      | |||||||||| |||| ||||||| ||||||||||||
seq2  G-TACTACCTTAATTTCTCTGCCAC-GTGGCGGTGGAT  983