BAC Information

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BAC

Clone NameB6Ng01-060H06
Chromosome3 (Build37)17 (Build37)
Map Location 41,059,191 - 41,059,73789,240,494 - 89,240,836
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H06.bB6Ng01-060H06.g
ACCDH881422DH881423
length558343
definitionDH881422|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H06, 5' end.DH881423|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,191 - 41,059,737)(89,240,494 - 89,240,836)
sequence
gaattctttgtttaactgtgagccgcatttttaatggggttatttgattt
tctggagtccatcttcttgagttctggatatatattggatattagtcccc
tttctgatttaggataggtaaagatcctttaccaatctgttggtggcctt
tttgtcttattcacagtgtcttttgccttacagaagctttgcagtttcat
gaggtcctattttcaattctcgattttacagcacaagccactgatattct
attcaggaattttccccctgtgcccatatcttcgaggcttttccccactt
tctcctctataagtttcactgtctctggttttatgtggatttccttgatc
cacttaggttttaccttagtacaaggagataggaatggattgattcacat
tcttctatatgataaccaccagttgtgccagcaccatttgttgaaaatgc
tgtctttcttccactggatggttttagctcccttgtcgaagatcaagtga
ccatacgtgtgtgggttcaattctgcgtcttcaattctgttccattggtc
tacttgtc
ctggattcttgtgtagattctagtcttcaactaatcaaagcaacttgcac
gaagtcatagactaccccgagaggtagaaagtagcttggaccgttggtag
gaatacagactgtgcacagaaaacaaatactaagcattgatcttcagtaa
gagccaagtgaactgagcaacagtttgcagaaaggagaagtagtggagga
attgccaagatcagatataccaggtcaggaaagtccatgaagatttaagg
atttctagcttcctcttgagcaacaattcttagctgaaggtcagtgttct
gttatcaagtccatgagtggagatctgggggttgggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059191_41059737
seq2: B6Ng01-060H06.b_43_588 (reverse)

seq1  CAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCA  50
      |||||||| |||||||||||| |||||  ||| |||||||| ||||||||
seq2  CAATGGAACAGAATTGAAGACGCAGAATTGAACCCACACACGTATGGTCA  50

seq1  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCA  100

seq1  TTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  150
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATATAGAAGAATG  150

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  200
       ||||  ||||| |||||||||||||||||||||| ||| ||||||||||
seq2  TGAATCAATCCATTCCTATCTCCTTGTACTAAGGTAAAACCTAAGTGGAT  200

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  250
      |||||||  ||||||||||||||||||| |||||||||||||||||||||
seq2  CAAGGAAATCCACATAAAACCAGAGACAGTGAAACTTATAGAGGAGAAAG  250

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  300
      ||||||||||||| |||||||||| |||||||| |||||||||| |||||
seq2  TGGGGAAAAGCCTCGAAGATATGGGCACAGGGGGAAAATTCCTGAATAGA  300

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  350
      | | || ||||||||||||||| || |||||| || |||| |||||||||
seq2  ATATCAGTGGCTTGTGCTGTAAAATCGAGAATTGA-AAATAGGACCTCAT  349

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  400
      |||||||||||||||||| |||||||||||||| || |||||||||||||
seq2  GAAACTGCAAAGCTTCTGTAAGGCAAAAGACACTGTGAATAAGACAAAAA  399

seq1  GG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  449
      || |||||||||||||| |||||||||||||||||||||||||||| |||
seq2  GGCCACCAACAGATTGGTAAAGGATCTTTACCTATCCTAAATCAGAAAGG  449

seq1  GGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAA  499
      |||||||||||||||||||||| ||||||||||||| |||| ||||||||
seq2  GGACTAATATCCAATATATATCCAGAACTCAAGAAGATGGACTCCAGAAA  499

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  547
      |||||||||||||||| ||||||| |||||| || |||||||||||||
seq2  ATCAAATAACCCCATT-AAAAATGCGGCTCACAGTTAAACAAAGAATT  546

seq1: chr17_89240494_89240836
seq2: B6Ng01-060H06.g_75_417 (reverse)

seq1  ACCCCCCCCCAACCCCCAGATCTCCACTCATGGACTTGATAACAGAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCAACCCCCAGATCTCCACTCATGGACTTGATAACAGAACAC  50

seq1  TGACCTTCAGCTAAGAATTGTTGCTCAAGAGGAAGCTAGAAATCCTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCAGCTAAGAATTGTTGCTCAAGAGGAAGCTAGAAATCCTTAAA  100

seq1  TCTTCATGGACTTTCCTGACCTGGTATATCTGATCTTGGCAATTCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGACTTTCCTGACCTGGTATATCTGATCTTGGCAATTCCTCCA  150

seq1  CTACTTCTCCTTTCTGCAAACTGTTGCTCAGTTCACTTGGCTCTTACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTCCTTTCTGCAAACTGTTGCTCAGTTCACTTGGCTCTTACTGA  200

seq1  AGATCAATGCTTAGTATTTGTTTTCTGTGCACAGTCTGTATTCCTACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAATGCTTAGTATTTGTTTTCTGTGCACAGTCTGTATTCCTACCAA  250

seq1  CGGTCCAAGCTACTTTCTACCTCTCGGGGTAGTCTATGACTTCGTGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCAAGCTACTTTCTACCTCTCGGGGTAGTCTATGACTTCGTGCAAG  300

seq1  TTGCTTTGATTAGTTGAAGACTAGAATCTACACAAGAATCCAG  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGATTAGTTGAAGACTAGAATCTACACAAGAATCCAG  343