BAC Information

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BAC

Clone NameB6Ng01-060H15
Chromosome3 (Build37)
Map Location 11,776,656 - 11,777,603
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978, LOC667999
Downstream geneEG621965, LOC100039798
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H15.bB6Ng01-060H15.g
ACCDH881440DH881441
length1,2261,044
definitionDH881440|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H15, 5' end.DH881441|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggactatgttgaagaggtagggagaaagtggacagccttgtc
tagtccctgattttagtgggattgtttcaagcttctcaccatttactttg
atgttggctactggtttgctgtagattgcttttatcatgtttaggtatgg
gccttgaattcctgatctttccaagtgttttatcatgaatgggttttgga
tattgtcgaatgcttttctgaatttaaagagatgatcatgtggtttttgt
ctttgagtttgtttatataatggattacattaatggattttcgtatatta
accaactgtgaatccctggaataaaacctacttggtcaggatggatgatt
gctttaatgtgttcttggattcggttaacgagaattttattgaggatttt
tgcaccgatattcgtaagggaaattggtctgacgttctctatctttgttg
gatctttctgtggtttaggtatcagagtaattgtggcttcatagaatgag
ttgggtagagttccctctacttctattttgtggaatagtttgtgcagaac
tgggaatacatcttctttaaagtctggtagaactctgcactaaacccatc
tggtcctgggctttttttggctggtagactattaatgactgcttctattt
ctttaggggatatgggactgtttagatctttaacttgatcccaatttaac
tttggtacctggtatctgtccacaaatttgtccatttcgtccaggttttc
cagttttgttaagtatagccttttgcagaaggatctgatgatgttttgga
tttcttcaggaactgttgctatgtctcccttttcatttctgattttgtaa
attaggatcttgtccctgtgccctctagtgagtctagctaagggtttatc
tatcttgtgattttctcaagaaccaactcctcgtttggtaattcttgaat
agttcttcctgttccactggttgatttcaccactgagtttgattattcct
gccttcttctctctgggtgaattgattccttttttccagagctttagatg
tgtgtcaagctgctagtatttggctccttccggttctcctgaagccatca
gagtttgagtttctctttaagaatgctttcattggtccataggttgggtg
ttgggctccattcctagttgaaagcctagtaccttctttattcctcctgg
acaaggtcattgtgaaaggtgttaat
gaattcctaaaatttaatctctagttttccctcagttattttttttaaat
tctatttctaatttcatgtcttatactattttctccatttcattccatgg
tctgtttgtatcttcatagatttcattaatctgtttatttgtctttttaa
atgtctttttaaatggccatatttgtaatagttatttaaaccaattttat
gtgtttaactacatactgcatttcagagactgctgtagcaggattactat
gttctagtagacacatatttttctggttgttattgattgtgttcctgctc
tggtatgtttgcatctgggtttgtaattactgtaatgacaggtgttgaca
tttgctgttgtctttgcttgatgtgttttccattccttgatttctgtttc
cctctatgggtcttagtagcataaactgattgtggattgcctagtagcta
gtgcttctgtgtccctgcctactgagaccactgaagatcctgtgttgaac
ttctttctaggtatgtagaaatggacatgcagtagaatgaaggggcagga
ttggagaatccaaagggatgatgaaaattgagtctgctatgaggatctta
ctcttctgcttttatgatcagtggattttcaacaagaggatatataggaa
ctagtagatgactagtgaaatggggtgtgaatgaataccataggagagga
tttgattatttccatgggtttagggaaagaaaagataggctgctgcaaaa
ggtcctctttaaacctgggggtgagactgggaagatgaaattagagggtg
tgaaggagaatgaaaatcactttccaaatccttggctaacatgttcatca
gtttccagagacagcctaaagtgatggcaggtgagagaagggctcctata
attttaaaatgagaacaatttagtcttttaagttttctttaagaatacaa
atatttttctaacttgtcatttgccaatagtgcaaaccttatttgaagtc
agcaatattgggcttcttcacaatgtactacagggctatataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11776656_11777603
seq2: B6Ng01-060H15.g_177_1110

seq1  TCTTCATAGATTTCATTAATCTGTTTATTTGTCTTTTTAAATGTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAGATTTCATTAATCTGTTTATTTGTCTTTTTAAATGTCTTTTT  50

seq1  AAATGGCCATATTTGTAATAGTTATTTAAACCAATTTTATGTGTTTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCATATTTGTAATAGTTATTTAAACCAATTTTATGTGTTTAACT  100

seq1  ACATACTGCATTTCAGAGACTGCTGTAGCAGGATTACTATGTTCTAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGCATTTCAGAGACTGCTGTAGCAGGATTACTATGTTCTAGTAG  150

seq1  ACACATATTTTTCTGGTTGTTATTGATTGTGTTCCTGCTCTGGTATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTTTTCTGGTTGTTATTGATTGTGTTCCTGCTCTGGTATGTTT  200

seq1  GCATCTGGGTTTGTAATTACTGTAATGACAGGTGTTGACATTTGCTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGGTTTGTAATTACTGTAATGACAGGTGTTGACATTTGCTGTTG  250

seq1  TCTTTGCTTGATGTGTTTTCCATTCCTTGATTTCTGTTTCCCTCTATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTGATGTGTTTTCCATTCCTTGATTTCTGTTTCCCTCTATGGG  300

seq1  TCTTAGTAGCATAAACTGATTGTGGATTGCCTAGTAGCTAGTGCTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTAGCATAAACTGATTGTGGATTGCCTAGTAGCTAGTGCTTCTGT  350

seq1  GTCCCTGCCTACTGAGACCACTGAAGATCCTGTGTTGAACTTCTTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGCCTACTGAGACCACTGAAGATCCTGTGTTGAACTTCTTTCTAG  400

seq1  GTATGTAGAAATGGACATGCAGTAGAATGAAGGGGCAGGATTGGAGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAGAAATGGACATGCAGTAGAATGAAGGGGCAGGATTGGAGAATC  450

seq1  CAAAGGGATGATGAAAATTGAGTCTGCTATGAGGATCTTACTCTTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGATGATGAAAATTGAGTCTGCTATGAGGATCTTACTCTTCTGCT  500

seq1  TTTATGATCAGTGGATTTTCAACAAGAGGATATATAGGAACTAGTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGATCAGTGGATTTTCAACAAGAGGATATATAGGAACTAGTAGATG  550

seq1  ACTAGTGAAATGGGGTGTGAATGAATACCATAGGAGAGGATTTGATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGAAATGGGGTGTGAATGAATACCATAGGAGAGGATTTGATTATT  600

seq1  TCCATGGGTTTAGGGAAAGAAAAGATAGGCTGCTGCAAAAGGTCCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGTTTAGGGAAAGAAAAGATAGGCTGCTGCAAAAGGTCCTCTTT  650

seq1  AAACCTGGGGGTGAGACTGGGAAGATGAAATTAGAGGGTGTGAAGGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGGGGTGAGACTGGGAAGATGAAATTAGAGGGTGTGAAGGAGAA  700

seq1  TGAAAATCACTTTCCAAATCCTTGGCTAACATGTTCATCAGGTTTCCAGA  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAAAATCACTTTCCAAATCCTTGGCTAACATGTTCATCA-GTTTCCAGA  749

seq1  GACAGCCTAAAGTGATGGCAGGTGAGAGAAGGGGCTCCTATAATTTTTAA  800
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GACAGCCTAAAGTGATGGCAGGTGAGAGAA-GGGCTCCTATAA-TTTTAA  797

seq1  AATGAGAACAATTTAGTCTTTTTAAAGTTTTCTTTAGAAATACAAATATT  850
      ||||||||||||||||||||||  ||||||||||||  ||||||||||||
seq2  AATGAGAACAATTTAGTCTTTT--AAGTTTTCTTTAAGAATACAAATATT  845

seq1  TTTCTAACCTGTCATTTGCCAAATAGTGCAGAACTTATTCTGAAGTTCAG  900
      |||||||| ||||||||||| ||||||||| | |||||| ||||| ||||
seq2  TTTCTAACTTGTCATTTGCC-AATAGTGCAAACCTTATT-TGAAG-TCAG  892

seq1  CAAATATTTGAGACTTCTTCAC-ATGTACTACAAGGGCTTAATTATAAA  948
      | ||||||   | ||||||||| ||||||||| ||||||    ||||||
seq2  C-AATATT--GGGCTTCTTCACAATGTACTAC-AGGGCT---ATATAAA  934