BAC Information

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BAC

Clone NameB6Ng01-060I19
Chromosome3 (Build37)
Map Location 78,191,235 - 78,192,413
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060I19.bB6Ng01-060I19.g
ACCDH881493DH881494
length1,1591,151
definitionDH881493|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I19, 5' end.DH881494|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaatttctttcttatttcttcattgacccagaaaattgagtt
gcgaattgttcagtttttgtgcatatttaacctttctgttgttctgttgt
tgttgaagtccatatttaatccatggtggtctaataatataaaggtgatt
attttaaacttcttgcatctgtgaaacttgctttgtgactgaggatatgg
tcagtttggggtaaagttccttgagttgctgtgaagaatctatcttcttt
tgtgtttgggtgaaatgttctattggtatctcttaagtcaatttgagttg
taatatccatcaatttccattttgtttctgtctggatgacctgcccattg
ttgaaagaagaatattgaagtctctcactattagtgtgggggttctatat
gtgattttagctttagtaatgtttattttaatactgttgaatgcccttgc
atttgaggcaaaaatgttcagaattgagaagtcatcgtggaagatctttc
ctttgatcagtatatactgtactttcctagggatttctgtctgtattcag
gtgagggcagagcctgtgattgggcagtgtaaaaagaaggcaggttgaga
gttttggagataggacatatagggatacagaaaggcagaaggaaagaaga
taggggaagaaaaggatgaacctgattgacatgtctttaagtagccacag
atagttatgaatatcatagaagggatggaataaatatggcaatttgtcta
atctatgtgggcagcttatatcaatatcaatttgctctgagtttattgtg
tgtgcattttgtgggttgagaatttactgatataaatctaatgaattaca
aacctctagagttttgattttactgggttatggggatttgtgacagctag
ctacagggagtggatggctgggaatgtgagcagttcacagcaagcaaact
gaatggtgttagccacaaagcagtgagactgtcaggccaagaatgctgac
atactgggtgatcttaaatattacggcaaattccatctcttgattatttt
ttgtcaaagatcttatagatatcagaaagcacctcgcctcgtctctgatc
atttttcctgagatgctatactgaatataatagctctgtgcacaaatctg
gggatagtc
gaattcaggtgtaatttttttaatgtttatgagacataaagaatcttgtt
ttatgaaggcaattgtgagaatgtataataaataatctaaaataatacca
atttttattaatgcatacttattatgtgttaataatataggttctcttta
agacttccatacaagcctatagcatgtatcaatcatatctaccttcctcc
cccaacacttataaatctttattaagtatcaattccacctccaatatggc
atttttagcttctatttatcaagagcatgcaatacttgccttgctgtgtc
tgatttattctactatttccatacattttgctgcaaaggatgaattgcat
cctttgatatgactcttgtatttgtatttaaaattgtctttatccacttt
cctgtttacaggcctgtataatggtgattcaatactttaactactgtgaa
tggtactgtggtatcttttctgagtaatacttgaatcctatggtagttgt
atctttagtgttttgaacattgtctgtagtgcctgtactaatttacattt
tccccaaaccataagcaggaggagtttctttttcttgatattgataccat
taccaaattttccttattgccaattatcaaacaattaatttttagaagaa
aaagagttttatattgttttgcaacttgaggactgcaaacatatcaaagc
agcaaacaacttaataatatatgcccatctccaccatttgctgtatcctg
attaatttggccatactctgttttgcgtaactaatgactcaacatataga
agaagaaagtaacacattttcatcatatgatatgacaggccttaaaagat
aaacacagtttttaacataaaaaatttaaaacagattgatcaatgcaatc
aaattgaacagccagacataatgcatacatcgatggacaattgacttttg
agaaagagctagagtatcactggggaaaacttcacatagccacaaagatg
gggtcaagtgatactgctcgtagaggactgcaatagatcttactcatcat
cctgtcaaatcactctcagtggattaagaacctcacttaggcagctcttg
gatctgatagaaaaatagtgagaaagcttgaactactgaaaaacaaagac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78191235_78192413
seq2: B6Ng01-060I19.g_66_1216 (reverse)

seq1  AGTCTTTGTTTCTTTCAGTTAGTTCAAGGCTATCCCTCACTATCTTTTCT  50
      ||||||||||  |||||| |||||||| ||| |  |||||||| ||||||
seq2  AGTCTTTGTT--TTTCAG-TAGTTCAA-GCTTT--CTCACTAT-TTTTCT  43

seq1  ATCAGATCCAAGGTAGCTGGCCTAATGTTGAGGTTCTTAATCCACTTGGA  100
      ||||||||||||  |||| ||||||   ||||||||||||||||||  ||
seq2  ATCAGATCCAAG--AGCT-GCCTAA--GTGAGGTTCTTAATCCACTGAGA  88

seq1  GTTGAATTTGTACAGGATGATGAGTATGGATCTATTTGCGGTCCTCTACG  150
      ||   ||||| |||||||||||||||  |||||| |||| ||||||||||
seq2  GT--GATTTG-ACAGGATGATGAGTA-AGATCTA-TTGCAGTCCTCTACG  133

seq1  TGCAGGTATCCACTTTGACCACCATCATTTGTTGGCTATGTTGAAGTTTT  200
       ||| |||| ||| |||||| ||||| |||| |||||||| |||||||||
seq2  AGCA-GTAT-CAC-TTGACC-CCATC-TTTG-TGGCTATG-TGAAGTTTT  176

seq1  CCCCAGTGTATAACTCTAGCTTCTTTCTCAAAAGTCAATTGTCCATCGAT  250
      |||||||| || |||||||| |||||||||||||||||||||||||||||
seq2  CCCCAGTG-AT-ACTCTAGC-TCTTTCTCAAAAGTCAATTGTCCATCGAT  223

seq1  GTATGCATTTATGTCTGGCTGTTCAATTTGATTGCATTGATCAATCTGTT  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCA-TTATGTCTGGCTGTTCAATTTGATTGCATTGATCAATCTGTT  272

seq1  TTAAATTTTTTATGTTTAAAAACTGTGTTTATCTTTTAAGGCCTGTCATA  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTTTATG-TTAAAAACTGTGTTTATCTTTTAAGGCCTGTCATA  321

seq1  TCATATGATG-AAATGTGTTACTTTCTTCTTCTATATGTTGAGTCATTAG  399
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCATATGATGAAAATGTGTTACTTTCTTCTTCTATATGTTGAGTCATTAG  371

seq1  TTACGCAAAACAGAGTATGGCCAAATTAATCAGGATACAGCAAATGGTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCAAAACAGAGTATGGCCAAATTAATCAGGATACAGCAAATGGTGG  421

seq1  AGATGGGCATATATTATTAAGTTGTTTGCTGCTTTGATATGTTTGCAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCATATATTATTAAGTTGTTTGCTGCTTTGATATGTTTGCAGTC  471

seq1  CTCAAGTTGCAAAACAATATAAAACTCTTTTTCTTCTAAAAATTAATTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTGCAAAACAATATAAAACTCTTTTTCTTCTAAAAATTAATTGT  521

seq1  TTGATAATTGGCAATAAGGAAAATTTGGTAATGGTATCAATATCAAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATTGGCAATAAGGAAAATTTGGTAATGGTATCAATATCAAGAAA  571

seq1  AAGAAACTCCTCCTGCTTATGGTTTGGGGAAAATGTAAATTAGTACAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCCTCCTGCTTATGGTTTGGGGAAAATGTAAATTAGTACAGGC  621

seq1  ACTACAGACAATGTTCAAAACACTAAAGATACAACTACCATAGGATTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGACAATGTTCAAAACACTAAAGATACAACTACCATAGGATTCAA  671

seq1  GTATTACTCAGAAAAGATACCACAGTACCATTCACAGTAGTTAAAGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTCAGAAAAGATACCACAGTACCATTCACAGTAGTTAAAGTATT  721

seq1  GAATCACCATTATACAGGCCTGTAAACAGGAAAGTGGATAAAGACAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCATTATACAGGCCTGTAAACAGGAAAGTGGATAAAGACAATTT  771

seq1  TAAATACAAATACAAGAGTCATATCAAAGGATGCAATTCATCCTTTGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAATACAAGAGTCATATCAAAGGATGCAATTCATCCTTTGCAG  821

seq1  CAAAATGTATGGAAATAGTAGAATAAATCAGACACAGCAAGGCAAGTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTATGGAAATAGTAGAATAAATCAGACACAGCAAGGCAAGTATT  871

seq1  GCATGCTCTTGATAAATAGAAGCTAAAAATGCCATATTGGAGGTGGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCTTGATAAATAGAAGCTAAAAATGCCATATTGGAGGTGGAATT  921

seq1  GATACTTAATAAAGATTTATAAGTGTTGGGGGAGGAAGGTAGATATGATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTAATAAAGATTTATAAGTGTTGGGGGAGGAAGGTAGATATGATT  971

seq1  GATACATGCTATAGGCTTGTATGGAAGTCTTAAAGAGAACCTATATTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGCTATAGGCTTGTATGGAAGTCTTAAAGAGAACCTATATTATT  1021

seq1  AACACATAATAAGTATGCATTAATAAAAATTGGTATTATTTTAGATTATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAATAAGTATGCATTAATAAAAATTGGTATTATTTTAGATTATT  1071

seq1  TATTATACATTCTCACAATTGCCTTCATAAAACAAGATTCTTTATGTCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACATTCTCACAATTGCCTTCATAAAACAAGATTCTTTATGTCTC  1121

seq1  ATAAACATTAAAAAAATTACACCTGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  ATAAACATTAAAAAAATTACACCTGAATTC  1151