BAC Information

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BAC

Clone NameB6Ng01-061B17
Chromosome3 (Build37)
Map Location 115,904,630 - 116,089,108
singlet/doubletdoublet
Overlap geneGpr88, Cdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061B17.bB6Ng01-061B17.g
ACCDH881882DH881883
length775999
definitionDH881882|Mus musculus domesticus DNA, BAC clone: B6Ng01-061B17, 5' end.DH881883|Mus musculus domesticus DNA, BAC clone: B6Ng01-061B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,088,334 - 116,089,108)(115,904,630 - 115,905,632)
sequence
gaattcatcagtcgcgttggagcgattaccacgtgacaggcgcacagcca
gaagagttgatggtgaactgtgaattctcctactttctgctgttactgtg
aggacctgaggccacacatgggaggattgggatggtgggtcccagcaggc
ggagttggtaaggaagtgtcacatagggaaagcattggagctaagggagt
ttaagaaagggataatataacaagaagttggggagggtctcccccttttc
ttcctcttctaatcaaaaagaaaaggtttaatgtgtttccttttgtgtgg
ttgttttgtgctcatctgaaccccctatcactgagcctgttttaatggtt
tgctgatcagcagaccccaccaacagggtatgatacagtttgtttgccat
ttaatatttttttatagcatataaaacatttttctgaattaatatatgtt
gttgtacttgttcttagcctaaatgctcaggtgtgatttcaaatgttctt
tttttttttttaatggatttttaatctttagagtgctagagatgggatca
ataggtttagggtttttttgttattgttctttcttacttttttttttaag
tatagtgttaaaaacctgtggcgccttaaaccagttcaaggcctattgta
cttaaaccagtttgtacagttggcactatgtagaatttaaaaatttatac
atgcattaaatttttatatttatttatttgtgtgtgagtgtgtgtgcgtg
agtgtgtgtgtatatatgtgtgtgt
gaattcaggtaagacccaaggcactcagaaggtggactttattatggagt
aaagtggggtacctttaagtgataggagttggtagtgttcaaaaggagcc
actgtggaggaaagggtgtgagaactgacaatagtcagagagaccattgt
gctaacccacattctgagggagactttatactaggaagagacagctttca
tgaaggggacatccagtccaggtgatcagcaagtgtccttagattagctc
tataagggaggaaacagtgtcgtgtttgttacaagggaacctgctagatt
atcatcttaggatcttttcagtagtttagaatgtcatgtctctacccagg
gccagaaatgcaactcacatcctattctttggccctaaatcatacaacag
gccatattttaaagaatttaaaagcaggaaaatctatacaaatttatttc
ctatgttccttaatggactttaacaaagtccagctccctctgccttcctc
cacgttgtatgctattttaaatgttaagtagccgcagctcttacactgcc
tccatttttttcacatggcatttcagactctaataagaggcagccatgat
agattcctcttcactaaaatgactgtgttaccagggaaacaggagacaag
gtccagagttaatgatgagggaggggtccaacttcagtgacctaaaagct
cgctcttttttaactagctacgtaccacgtggaccttcttttttaacata
gtaaagtgtgaaggggagagaagagatgtctctgaataaagaagcaaaca
tcaaggaggcaagctgaacaatcttctaaagaggtggagactggtagccc
cgggctgaatcgctctgagctggataggaaggagtgcgcctactcactgg
aactcagcttcattctgaaggaagcacaatcttttcccctacacaggtat
ccagagtcctgtgtggccctgattgcagaaaaggtgtaagtgggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116088334_116089108
seq2: B6Ng01-061B17.b_47_821 (reverse)

seq1  ACACACACATATATACACACACACTCACGCACACACACTCACACACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATATACACACACACTCACGCACACACACTCACACACAAAT  50

seq1  AAATAAATATAAAAATTTAATGCATGTATAAATTTTTAAATTCTACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATAAAAATTTAATGCATGTATAAATTTTTAAATTCTACATAG  100

seq1  TGCCAACTGTACAAACTGGTTTAAGTACAATAGGCCTTGAACTGGTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTGTACAAACTGGTTTAAGTACAATAGGCCTTGAACTGGTTTAA  150

seq1  GGCGCCACAGGTTTTTAACACTATACTTAAAAAAAAAAGTAAGAAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCACAGGTTTTTAACACTATACTTAAAAAAAAAAGTAAGAAAGAAC  200

seq1  AATAACAAAAAAACCCTAAACCTATTGATCCCATCTCTAGCACTCTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAAAACCCTAAACCTATTGATCCCATCTCTAGCACTCTAAAG  250

seq1  ATTAAAAATCCATTAAAAAAAAAAAAAGAACATTTGAAATCACACCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATCCATTAAAAAAAAAAAAAGAACATTTGAAATCACACCTGAG  300

seq1  CATTTAGGCTAAGAACAAGTACAACAACATATATTAATTCAGAAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGCTAAGAACAAGTACAACAACATATATTAATTCAGAAAAATGT  350

seq1  TTTATATGCTATAAAAAAATATTAAATGGCAAACAAACTGTATCATACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCTATAAAAAAATATTAAATGGCAAACAAACTGTATCATACCC  400

seq1  TGTTGGTGGGGTCTGCTGATCAGCAAACCATTAAAACAGGCTCAGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGGGGTCTGCTGATCAGCAAACCATTAAAACAGGCTCAGTGATA  450

seq1  GGGGGTTCAGATGAGCACAAAACAACCACACAAAAGGAAACACATTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCAGATGAGCACAAAACAACCACACAAAAGGAAACACATTAAAC  500

seq1  CTTTTCTTTTTGATTAGAAGAGGAAGAAAAGGGGGAGACCCTCCCCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTGATTAGAAGAGGAAGAAAAGGGGGAGACCCTCCCCAACT  550

seq1  TCTTGTTATATTATCCCTTTCTTAAACTCCCTTAGCTCCAATGCTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTATATTATCCCTTTCTTAAACTCCCTTAGCTCCAATGCTTTCCC  600

seq1  TATGTGACACTTCCTTACCAACTCCGCCTGCTGGGACCCACCATCCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACACTTCCTTACCAACTCCGCCTGCTGGGACCCACCATCCCAAT  650

seq1  CCTCCCATGTGTGGCCTCAGGTCCTCACAGTAACAGCAGAAAGTAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATGTGTGGCCTCAGGTCCTCACAGTAACAGCAGAAAGTAGGAGA  700

seq1  ATTCACAGTTCACCATCAACTCTTCTGGCTGTGCGCCTGTCACGTGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTTCACCATCAACTCTTCTGGCTGTGCGCCTGTCACGTGGTAA  750

seq1  TCGCTCCAACGCGACTGATGAATTC  775
      |||||||||||||||||||||||||
seq2  TCGCTCCAACGCGACTGATGAATTC  775

seq1: chr3_115904630_115905632
seq2: B6Ng01-061B17.g_71_1069

seq1  GAATTCAGGTAAGACCCAAGGCACTCAGAAGGTGGACTTTATTATGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAAGACCCAAGGCACTCAGAAGGTGGACTTTATTATGGAGT  50

seq1  AAAGTGGGGTACCTTTAAGTGATAGGAGTTGGTAGTGTTCAAAAGGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGGTACCTTTAAGTGATAGGAGTTGGTAGTGTTCAAAAGGAGCC  100

seq1  ACTGTGGAGGAAAGGGTGTGAGAACTGACAATAGTCAGAGAGACCATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGAGGAAAGGGTGTGAGAACTGACAATAGTCAGAGAGACCATTGT  150

seq1  GCTAACCCACATTCTGAGGGAGACTTTATACTAGGAAGAGACAGCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCCACATTCTGAGGGAGACTTTATACTAGGAAGAGACAGCTTTCA  200

seq1  TGAAGGGGACATCCAGTCCAGGTGATCAGCAAGTGTCCTTAGATTAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGACATCCAGTCCAGGTGATCAGCAAGTGTCCTTAGATTAGCTC  250

seq1  TATAAGGGAGGAAACAGTGTCGTGTTTGTTACAAGGGAACCTGCTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGAGGAAACAGTGTCGTGTTTGTTACAAGGGAACCTGCTAGATT  300

seq1  ATCATCTTAGGATCTTTTCAGTAGTTTAGAATGTCATGTCTCTACCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTAGGATCTTTTCAGTAGTTTAGAATGTCATGTCTCTACCCAGG  350

seq1  GCCAGAAATGCAACTCACATCCTATTCTTTGGCCCTAAATCATACAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAATGCAACTCACATCCTATTCTTTGGCCCTAAATCATACAACAG  400

seq1  GCCATATTTTAAAGAATTTAAAAGCAGGAAAATCTATACAAATTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTTTAAAGAATTTAAAAGCAGGAAAATCTATACAAATTTATTTC  450

seq1  CTATGTTCCTTAATGGACTTTAACAAAGTCCAGCTCCCTCTGCCTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCCTTAATGGACTTTAACAAAGTCCAGCTCCCTCTGCCTTCCTC  500

seq1  CACGTTGTATGCTATTTTAAATGTTAAGTAGCCGCAGCTCTTACACTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGTATGCTATTTTAAATGTTAAGTAGCCGCAGCTCTTACACTGCC  550

seq1  TCCATTTTTTTCACATGGCATTTCAGACTCTAATAAGAGGCAGCCATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTTTCACATGGCATTTCAGACTCTAATAAGAGGCAGCCATGAT  600

seq1  AGATTCCTCTTCACTAAAATGACTGTGTTACCAGGGAAACAGGAGACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTCTTCACTAAAATGACTGTGTTACCAGGGAAACAGGAGACAAG  650

seq1  GTCCAGAGTTAATGATGAGGGAGGGGTCCAACTTCAGTGACCTAAAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGTTAATGATGAGGGAGGGGTCCAACTTCAGTGACCTAAAAGCT  700

seq1  CGCTCTTTTTTAACTAGCTACGTACCACGTGGACCTTCTTTTTTAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTTTTTAACTAGCTACGTACCACGTGGACCTTCTTTTTTAACATA  750

seq1  GTAAAGTGTGAAGGGGAGAGAAGAGATGTCTCTGAATAAAGAAGCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGTGAAGGGGAGAGAAGAGATGTCTCTGAATAAAGAAGCAAACA  800

seq1  TCAAGGAGGCAAGCTGAACAATCTTCTAAAGAGGTGGAGACTGGTAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGGCAAGCTGAACAATCTTCTAAAGAGGTGGAGACTGGTAGCCC  850

seq1  CGGGGCTGAATCGCTCTGAGCTGGATAGGAAGGAGTGCGCCTACTCACTG  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-GGGCTGAATCGCTCTGAGCTGGATAGGAAGGAGTGCGCCTACTCACTG  899

seq1  GAACTCAGCTTCATTCTGAAGGAAAGCACAATC-TCTCCCCTACACAGGT  949
      |||||||||||||||||||||| |||||||||| | ||||||||||||||
seq2  GAACTCAGCTTCATTCTGAAGG-AAGCACAATCTTTTCCCCTACACAGGT  948

seq1  ATCCAGTAGTCCTGGTGTGGCCCTGATTGGCAGGAGAGGTGTATGTGGGT  999
      |||||| |||||| |||||||||||||| |||| | ||||||| ||||||
seq2  ATCCAG-AGTCCT-GTGTGGCCCTGATT-GCAGAAAAGGTGTAAGTGGGT  995

seq1  GGGT  1003
      ||||
seq2  GGGT  999