BAC Information

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BAC

Clone NameB6Ng01-061B18
Chromosome3 (Build37)
Map Location 93,630,490 - 93,771,448
singlet/doubletdoublet
Overlap geneTdpoz3, EG668341, LOC668344, EG668346, Tdpoz5
Upstream geneKprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
Downstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061B18.bB6Ng01-061B18.g
ACCDH881884DH881885
length128776
definitionDH881884|Mus musculus domesticus DNA, BAC clone: B6Ng01-061B18, 5' end.DH881885|Mus musculus domesticus DNA, BAC clone: B6Ng01-061B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,771,321 - 93,771,448)(93,630,490 - 93,631,477)
sequence
catcccaaattgctgtcattttcacttatgcaacactgtttctcagaact
ccttccaggattctaacctggagaatggaaagttgtttggattttatttt
tcttttttgggggtggggatggagggtg
gaattccctcttcacagattgctgcctgctggtagctggccatgaattca
aggctcacaaggcaatcctagcagctcgctctccagttttcagagccatg
tttgaaaatgaaatgaaggagagtctaaagaaccccattgagatcatgga
cctggatcttgatgtctttaaggagatgatgggtttcatctacacaggga
aggcaccacacctccacagccactccatggcctgtgatgtgctgccagct
gctgacaagtatggcctggtgggcctgaaggtcctgtgtgaggatgtcct
ctgcaggaacctctctgtgaagactgctgcacacactctcatcctggctg
acctcaacagcacagagaagctgaagagtcaggccctggatttcattgcc
attcatgcctgtgaggtttctgagacctcagagtggaagtcaatgtggaa
gtcccatccccacttggtggctgaagcattccactccctggcttctgcaa
agtgttctttcttggagccaaatgtggtcttagaatctagccagctatga
tctacatctttcctccagcagcagcagcaacagcaacaacaacaacaaca
acaacaacacacaacaacaaacaacagcaacaataacaactagtgttacc
aatgaattctggttagacaatcatgttgtggaagaatttacagtgaatct
ggggacatgcagcatggtagatgaggatttaaatcatctgtaatatgtta
aaatagtggggggtgggtggggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93771321_93771448
seq2: B6Ng01-061B18.b_49_176 (reverse)

seq1  CACCCTCCATCCCCACCCCCAAAAAAGAAAAATAAAATCCAAACAACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCATCCCCACCCCCAAAAAAGAAAAATAAAATCCAAACAACTTT  50

seq1  CCATTCTCCAGGTTAGAATCCTGGAAGGAGTTCTGAGAAACAGTGTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCCAGGTTAGAATCCTGGAAGGAGTTCTGAGAAACAGTGTTGCA  100

seq1  TAAGTGAAAATGACAGCAATTTGGGATG  128
      ||||||||||||||||||||||||||||
seq2  TAAGTGAAAATGACAGCAATTTGGGATG  128

seq1: chr3_93630490_93631477
seq2: B6Ng01-061B18.g_69_844

seq1  GAATTCCCTCTTCACAGATTGCTGCCTGCTGGTAGCTGGCCATGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTTCACAGATTGCTGCCTGCTGGTAGCTGGCCATGAATTCA  50

seq1  AGGCTCACAAGGCAATCCTAGCAGCTCGCTCTCCAGTTTTCAGAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACAAGGCAATCCTAGCAGCTCGCTCTCCAGTTTTCAGAGCCATG  100

seq1  TTTGAAAATGAAATGAAGGAGAGTCTAAAGAACCCCATTGAGATCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATGAAATGAAGGAGAGTCTAAAGAACCCCATTGAGATCATGGA  150

seq1  CCTGGATCTTGATGTCTTTAAGGAGATGATGGGTTTCATCTACACAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCTTGATGTCTTTAAGGAGATGATGGGTTTCATCTACACAGGGA  200

seq1  AGGCACCACACCTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCACACCTCCACAGCCACTCCATGGCCTGTGATGTGCTGCCAGCT  250

seq1  GCTGACAAGTATGGCCTGGTGGGCCTGAAGGTCCTGTGTGAGGATGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAGTATGGCCTGGTGGGCCTGAAGGTCCTGTGTGAGGATGTCCT  300

seq1  CTGCAGGAACCTCTCTGTGAAGACTGCTGCACACACTCTCATCCTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAACCTCTCTGTGAAGACTGCTGCACACACTCTCATCCTGGCTG  350

seq1  ACCTCAACAGCACAGAGAAGCTGAAGAGTCAGGCCCTGGATTTCATTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACAGCACAGAGAAGCTGAAGAGTCAGGCCCTGGATTTCATTGCC  400

seq1  ATTCATGCCTGTGAGGTTTCTGAGACCTCAGAGTGGAAGTCAATGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCCTGTGAGGTTTCTGAGACCTCAGAGTGGAAGTCAATGTGGAA  450

seq1  GTCCCATCCCCACTTGGTGGCTGAAGCATTCCACTCCCTGGCTTCTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATCCCCACTTGGTGGCTGAAGCATTCCACTCCCTGGCTTCTGCAA  500

seq1  AGTGTTCTTTCTTGGAGCCAAATGTGGTCTTAGAATCTAGCCAGCTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTTCTTGGAGCCAAATGTGGTCTTAGAATCTAGCCAGCTATGA  550

seq1  TCTACATCTTTCCTCCAGCAGCAGCAGCAACAGCAACAACAACAACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTTCCTCCAGCAGCAGCAGCAACAGCAACAACAACAACAACA  600

seq1  ACAACAACACACAACAACAAACAACAGCAACAATAACAACTAGTGTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACACACAACAACAAACAACAGCAACAATAACAACTAGTGTTACC  650

seq1  AATGAATTCTGGTTAGACAATCATGTTGTGGAAGAATTTACAGTGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTCTGGTTAGACAATCATGTTGTGGAAGAATTTACAGTGAATCT  700

seq1  GGGGACATGCAGCATGGTAGATGAGGATTTAAATCATCTGTAATATGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATGCAGCATGGTAGATGAGGATTTAAATCATCTGTAATATGTTA  750

seq1  AAATAGT-GGGGGTGGGT-GGGAAGGGCAGCACTACAGTCTGGGATACTC  798
      ||||||| |||||||||| |||||||                        
seq2  AAATAGTGGGGGGTGGGTGGGGAAGG------------------------  776

seq1  TACCTGCCATCTATACTTTTGATGTTCTTGTTTGATGTCTTGCAAACTGG  848
                                                        
seq2  --------------------------------------------------  776

seq1  GATTCAATTTAGGTGCTGGCCCTAAGAGTGGCCAACTGAGCTTCTTTGAA  898
                                                        
seq2  --------------------------------------------------  776

seq1  GAAATGTATCCGCATTGGACTGAGCAGAACAGATGACCATGGTCAGAGGA  948
                                                        
seq2  --------------------------------------------------  776

seq1  AAGGAAAAATCAAACATGAGTGTTTACTCATTACGGAAGG  988
                                              
seq2  ----------------------------------------  776