BAC Information

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BAC

Clone NameB6Ng01-061C18
Chromosome3 (Build37)
Map Location 95,519,151 - 95,675,392
singlet/doubletdoublet
Overlap geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889
Upstream geneLOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4
Downstream geneGm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C18.bB6Ng01-061C18.g
ACCDH881923DH881924
length924694
definitionDH881923|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C18, 5' end.DH881924|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,519,151 - 95,519,839)(95,674,698 - 95,675,392)
sequence
gaattcattagcaagatcagggtaagtggaggcttcctctggttgagatg
tcatagctatggagctgagcggagggagaccaggaagaacagaggaaggc
gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagagaaagcttggacacagggactgaccatataata
tcagaatccaaggtgccattaggtagccatttgggtgattatctaagggg
tatcgaggacaagttcatctgcagagacctataaatttagatgcctgtaa
gtcaagcgctaagtgtagtggcctgacgttctccaaaagacatctccaaa
atggggcatcttggaggtgggggacactgtttccctgggtgaggagaggc
atcatgccagagcccaaggtgtcccaaagacacgggaaggattgaaagaa
ggcacaagctatccagtacatcatcacagtgctgggcaggggccaaagct
aaaagcccagacagacacggtccacctacttcttagatttacaagagaga
gagaaaaacccgtgctgaaaaaactgaagcctcacccaagggaaaaggtc
agctcggtgaaaagggccaatcaaagccttcaaaactgtagctggcagta
cctctatttctaagaataccagaggggtgccagccgttcaacagttactc
cctcgggtccagggaagtgtttattctaacgtcattactgcacggagtgg
tcagcaaccagtgccctaggctagggtggagggggaaaaagatatcagga
gagaagagactggccttttataatgggatgtagcgcatgtgcagggggga
agatgggccttttaggtgactgtgggaatgtatcgaatcttatcagccag
tgttgttgtatcctactgtcactg
gaattcagaggccccaggtagggagctcgaggggtgtgggggggttcact
gagctgcaaagcgagtatggcgggagggcaagatttcgcgtggtgcctag
aggcggacgaagagttctttctaactctcagcggaaacctattttttggt
ttgctttgctttgctttttcgagagtgtttttatgtagccctggctgccc
tgaaactggctctgtagacgaggctggcctcgaactcaagagttccgcct
gcctctgcctctcaagtgctgggataaaaggcgtgggccaccactgcccg
gcaattatcttttaattatttcttggtgtgaccggggggttgggaggggc
gaaagtcaggacagcttgcaggagtctgtcctctctttccaccgtaagga
tccagggctctaactcgggtcatcaggcttggtggcaagcgcctttacct
gctaagccatatcactgcgtagtgaaagaaatgttgctaacaatttgctt
gtactttttcattaaaaaaaaaagttatttatattttatgtgtgtgagtg
ttttacttgcatgtatgtctgtgcatcacagaggtcagaagagggtgttg
gattccctgggactgtatgtgttgtgagccaccctgtgggtactgggaat
cgaacttggatccttttactactgagccatctctccagacttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95519151_95519839
seq2: B6Ng01-061C18.b_283_973

seq1  GGTGATTATCTAAGGGGTATCGAGGACAAGTTCATCTGCAGAGACCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTATCTAAGGGGTATCGAGGACAAGTTCATCTGCAGAGACCTATA  50

seq1  AATTTAGATGCCTGTAAGTCAAGCGCTAAGTGTAGTGGCCTGACGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGATGCCTGTAAGTCAAGCGCTAAGTGTAGTGGCCTGACGTTCTC  100

seq1  CAAAAGACATCTCCAAAATGGGGCATCTTGGAGGTGGGGGACACTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACATCTCCAAAATGGGGCATCTTGGAGGTGGGGGACACTGTTTC  150

seq1  CCTGGGTGAGGAGAGGCATCATGCCAGAGCCCAAGGTGTCCCAAAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGAGGAGAGGCATCATGCCAGAGCCCAAGGTGTCCCAAAGACAC  200

seq1  GGGAAGGATTGAAAGAAGGCACAAGCTATCCAGTACATCATCACAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGATTGAAAGAAGGCACAAGCTATCCAGTACATCATCACAGTGCT  250

seq1  GGGCAGGGGCCAAAGCTAAAAGCCCAGACAGACACGGTCCACCTACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGGCCAAAGCTAAAAGCCCAGACAGACACGGTCCACCTACTTCT  300

seq1  TAGATTTACAAGAGAGAGAGAAAAACCCGTGCTGAAAAAACTGAAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTACAAGAGAGAGAGAAAAACCCGTGCTGAAAAAACTGAAGCCTC  350

seq1  ACCCAAGGGAAAAGGTCAGCTCGGTGAAAAGGGCCAACCAAAGCCTTCAA  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCCAAGGGAAAAGGTCAGCTCGGTGAAAAGGGCCAATCAAAGCCTTCAA  400

seq1  AACTGTAGCTGGCAGTACCTCCATTTCCAAGAATACCAGAGGGGTGCCAG  450
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AACTGTAGCTGGCAGTACCTCTATTTCTAAGAATACCAGAGGGGTGCCAG  450

seq1  CCGTTCAACAGTTACTCCCTCGGGTCCAGGGAAGTGTTTATTCCAACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCGTTCAACAGTTACTCCCTCGGGTCCAGGGAAGTGTTTATTCTAACGTC  500

seq1  ATTACTGCACGGAGTGGCCAGCAACCAGTGCCCTAGGCTAGGGTGGAGGG  550
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTACTGCACGGAGTGGTCAGCAACCAGTGCCCTAGGCTAGGGTGGAGGG  550

seq1  G--AAAAGATATCAGGAGAGAAGAGACTGGCCTTTTATAAGGGGATGCAG  598
      |  ||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GGAAAAAGATATCAGGAGAGAAGAGACTGGCCTTTTATAATGGGATGTAG  600

seq1  CGCATGTGCAGGGGGGAAGATGGGCCTTTTAGGTGACTGTGGGAATGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTGCAGGGGGGAAGATGGGCCTTTTAGGTGACTGTGGGAATGTAT  650

seq1  CGAATCTCAGCAGCCAGTGGTGTTGTACCCTACTGTCACTG  689
      ||||||| | ||||||||| ||||||| |||||||||||||
seq2  CGAATCTTATCAGCCAGTGTTGTTGTATCCTACTGTCACTG  691

seq1: chr3_95674698_95675392
seq2: B6Ng01-061C18.g_68_761 (reverse)

seq1  GTAAGTCTGGAGAGATGGCTCAGTAGTTAAGAGGATCCAAGTTCGATTCC  50
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  GTAAGTCTGGAGAGATGGCTCAGTAG-TAAAAGGATCCAAGTTCGATTCC  49

seq1  CAGTACCCACAGGGTGGCTCACAACACATACAGTCCCAGGGAATCCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCACAGGGTGGCTCACAACACATACAGTCCCAGGGAATCCAACA  99

seq1  CCCTCTTCTGACCTCTGTGATGCACAGACATACATGCAAGTAAAACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGACCTCTGTGATGCACAGACATACATGCAAGTAAAACACTC  149

seq1  ACACACATAAAATATAAATAACTTTTTTTTTTAATGAAAAAGTACAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATAAAATATAAATAACTTTTTTTTTTAATGAAAAAGTACAAGCA  199

seq1  AATTGTTAGCAACATTTCTTTCACTACGCAGTGATATGGCTTAGCAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTAGCAACATTTCTTTCACTACGCAGTGATATGGCTTAGCAGGTA  249

seq1  AAGGCGCTTGCCACCAAGCCTGATGACCCGAGTTAGAGCCCTGGATCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGCTTGCCACCAAGCCTGATGACCCGAGTTAGAGCCCTGGATCCTT  299

seq1  ACGGTGGAAAGAGAGGACAGACTCCTGCAAGCTGTCCTGACTTTCGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGAAAGAGAGGACAGACTCCTGCAAGCTGTCCTGACTTTCGCCCC  349

seq1  TCCCAACCCCCCGGTCACACCAAGAAATAATTAAAAGATAATTGCCGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCCCCCGGTCACACCAAGAAATAATTAAAAGATAATTGCCGGGC  399

seq1  AGTGGTGGCCCACGCCTTTTATCCCAGCACTTGAGAGGCAGAGGCAGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCCCACGCCTTTTATCCCAGCACTTGAGAGGCAGAGGCAGGCG  449

seq1  GAACTCTTGAGTTCGAGGCCAGCCTCGTCTACAGAGCCAGTTTCAGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTGAGTTCGAGGCCAGCCTCGTCTACAGAGCCAGTTTCAGGGCA  499

seq1  GCCAGGGCTACATAAAAACACTCTCGAAAAAGCAAAGCAAAGCAAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTACATAAAAACACTCTCGAAAAAGCAAAGCAAAGCAAACCAA  549

seq1  AAAATAGGTTTCCGCTGAGAGTTAGAAAGAACTCTTCGTCCGCCTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGTTTCCGCTGAGAGTTAGAAAGAACTCTTCGTCCGCCTCTAGG  599

seq1  CACCACGCGAAATCTTGCCCTCCCGCCATACTCGCTTTGCAGCTCAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGCGAAATCTTGCCCTCCCGCCATACTCGCTTTGCAGCTCAGTGA  649

seq1  ACCCCCCCACACCCCTCGAGCTCCCTACCTGGGGCCTCTGAATTC  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCACACCCCTCGAGCTCCCTACCTGGGGCCTCTGAATTC  694