BAC Information

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BAC

Clone NameB6Ng01-061F03
Chromosome3 (Build37)
Map Location 129,228,380 - 129,395,360
singlet/doubletdoublet
Overlap geneElovl6, LOC100043758, Egf
Upstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840
Downstream geneGm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061F03.bB6Ng01-061F03.g
ACCDH882031DH882032
length1,1111,200
definitionDH882031|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F03, 5' end.DH882032|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,394,227 - 129,395,360)(129,228,380 - 129,229,612)
sequence
gaattcaaggccagccaggtctatagaggacagctagggctagacagaga
aacgctgtctcaaaaaaccaaaattaaaccaaaaaaaaaaaaaattttaa
aacccaaaaaacaaaacgagagctaatctgtataaaatctgcttagattt
tgatactgagtcttacgcctctggtatgtattttacacatgcagcaaacc
tgagtctggactgcaggctgtggcaccaggttgccgagcacggggagtgg
cgacagggagcctctggcagcttgtcagcagtgtggcctgtgatgggaga
agagccactttcaaggattgttgttattattgttgttaattctttgagat
ggggtttctctgtgtggtcctggctggcctggaactcagaaatccacctg
cctctgcctctcaagtgctggcattaatggtgtgtgccaccgtgcccggc
ttactttcaaggttgctttaaaattgattccttaaagtccgcatgtcttg
acatgaattagcaacccagccagcttttgtttctcttaaaacagtcccca
gtactgacttcatcacccacacagcccaggcagcaccccacaaaagaccc
tgacagccaggccagggcttgccctctcagttctgcagacagaaaagctc
atacttgcctgctctctgggttttatagtgaactgttttgtttttctcgg
gtaattttttctccacttaaaaggtattgaagagggctggtgagatggct
cagtggttaagagcacccgactgctcttctgaaggtcaggagttcaaatc
ccagcaaccacatggtggctcacaaccatctcgtaacgagatctgactcc
ctcttctggagtgtctgaggacagctacagtgtacttacatatataaata
ataataaataaataataaataataaataataaataaatattttaaaagta
ttgaagatagatgtggtagttggtgctatatcccagagttggagctgagc
agagggattgcatgagtttgggacagctgaaacttcttaagtcagtgcag
cagcatgcttcccttaggctaagaaactattcaaactagaagcttgcatc
ttgtacttttc
gaattccaggacagccaggactacatacacaaagaaaccctgtttcaaaa
ggaaaaaaaaaacaaaggaagaagaaaataaaaataaaaagatcccccaa
aagatgccttctttacaaatgtccagttggccagcagtccctggaacaat
atgaattggaacaaaacacaggtagacggtgttcagtggtctaaggctag
gggagttgcctctgttgggttcactaaacatttctctggatggggaaagg
aagaaggaatcatgtgcaggagcctgtctaggctcaacttctgactttat
aactaaagagttgagagttcttaggaatgctagtaagcatcacctacatg
ctggaatgacactggaatctttcaaaagcagcaatcagaaggaaggaagg
atgctgagaagctatacctgatgactggaatgtagttttgctgggacctc
agaatgcagtcttatttagagtaacgccattgtagatgtaaccacagtac
caattaccatgggacaacaggaacccaagaggaacaagattataagggac
aggagaaggtgacacatggagaatagagaaggtgatctgaagacaaggtg
gtgtctataaggcagggaatgccagcttgctcgaagccaccaaatgctac
gagtcagaagtgggatagttttctagcacagactccagacccttcatctc
agacttggaggttctagaacttttatcccatgcatctgccaagtttgtgg
tttgaaagcagtaggaagcaaaatggagtcaccggtgtcacagactagca
aaaataaacagaaaaggacaggtcatgaaggaagtgaacctccacacata
tttctgtgaacaagaacagccactatgtgtacaccttaaacaaatggtat
ggcaacttgacacagaaagtctgtgagacatctgcccagtaagtgcttat
tcaactatagactcgagtcacctacttactgagtctttaaccaagaggat
agttttaaataacatgggcctctccttgccacttctgaaaccctttactt
ttctgagtttaccaccatggttccccatcaatcccaactctgtaagtcta
ctagacccaatcaactcattcttgtaaattttgctgttgtttagctgcaa
gctttggcctcttaggaatccagagctctatatacacgtgggccatgagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129394227_129395360
seq2: B6Ng01-061F03.b_50_1160 (reverse)

seq1  GAAAAGT-CAAGATGCCAAGCCTCTTGGTTTTGAATAGTTTCCTATGCCT  49
      ||||||| ||||||| ||||| ||| |  ||||||||||||| || ||||
seq2  GAAAAGTACAAGATG-CAAGCTTCTAG--TTTGAATAGTTTCTTA-GCCT  46

seq1  TAAAGGGAAGGCACTGCTGCTTGCAACTGAC-TAAGAAGGTTTTCAGCCT  98
        ||||||| ||| |||||| ||| |||||| |||||||  |||||| ||
seq2  --AAGGGAA-GCA-TGCTGC-TGC-ACTGACTTAAGAAG--TTTCAG-CT  87

seq1  GTCCCCAAACTCATGGCAATCCCTCTGCCTCAGCCTCCCAACTCCTGGGA  148
      || ||||||||||| |||||||||||| ||||||   |||||| ||||||
seq2  GT-CCCAAACTCAT-GCAATCCCTCTG-CTCAGC--TCCAACT-CTGGGA  131

seq1  TTATAGGCACCAACTACCACATCTATCTTCAATACCTTTTAAAATTATTT  198
       |||| |||||||||||||||||||||||||||| ||||||||| |||||
seq2  -TATA-GCACCAACTACCACATCTATCTTCAATA-CTTTTAAAA-TATTT  177

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTAT--TTATTTATTATATG  246
      ||||| ||||||| ||||||| ||||||||||||  ||||||| ||||||
seq2  ATTTA-TTATTTA-TTATTTA-TTATTTATTTATTATTATTTA-TATATG  223

seq1  TAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCT  273

seq1  CGTTACGAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACGAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCC  323

seq1  TGACCTTCAGAAGAGCAGTCGGGTGCTCTTAACCACTGAGCCATCTCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCAGAAGAGCAGTCGGGTGCTCTTAACCACTGAGCCATCTCACC  373

seq1  AGCCCTCTTCAATACCTTTTAAGTGGAGAAAAAATTACCCGAGAAAAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTTCAATACCTTTTAAGTGGAGAAAAAATTACCCGAGAAAAACA  423

seq1  AAACAGTTCACTATAAAACCCAGAGAGCAGGCAAGTATGAGCTTTTCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCACTATAAAACCCAGAGAGCAGGCAAGTATGAGCTTTTCTGT  473

seq1  CTGCAGAACTGAGAGGGCAAGCCCTGGCCTGGCTGTCAGGGTCTTTTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAACTGAGAGGGCAAGCCCTGGCCTGGCTGTCAGGGTCTTTTGTG  523

seq1  GGGTGCTGCCTGGGCTGTGTGGGTGATGAAGTCAGTACTGGGGACTGTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCCTGGGCTGTGTGGGTGATGAAGTCAGTACTGGGGACTGTTT  573

seq1  TAAGAGAAACAAAAGCTGGCTGGGTTGCTAATTCATGTCAAGACATGCGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAACAAAAGCTGGCTGGGTTGCTAATTCATGTCAAGACATGCGG  623

seq1  ACTTTAAGGAATCAATTTTAAAGCAACCTTGAAAGTAAGCCGGGCACGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGGAATCAATTTTAAAGCAACCTTGAAAGTAAGCCGGGCACGGT  673

seq1  GGCACACACCATTAATGCCAGCACTTGAGAGGCAGAGGCAGGTGGATTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACCATTAATGCCAGCACTTGAGAGGCAGAGGCAGGTGGATTTC  723

seq1  TGAGTTCCAGGCCAGCCAGGACCACACAGAGAAACCCCATCTCAAAGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGCCAGCCAGGACCACACAGAGAAACCCCATCTCAAAGAAT  773

seq1  TAACAACAATAATAACAACAATCCTTGAAAGTGGCTCTTCTCCCATCACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAATAATAACAACAATCCTTGAAAGTGGCTCTTCTCCCATCACA  823

seq1  GGCCACACTGCTGACAAGCTGCCAGAGGCTCCCTGTCGCCACTCCCCGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACTGCTGACAAGCTGCCAGAGGCTCCCTGTCGCCACTCCCCGTG  873

seq1  CTCGGCAACCTGGTGCCACAGCCTGCAGTCCAGACTCAGGTTTGCTGCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCAACCTGGTGCCACAGCCTGCAGTCCAGACTCAGGTTTGCTGCAT  923

seq1  GTGTAAAATACATACCAGAGGCGTAAGACTCAGTATCAAAATCTAAGCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAATACATACCAGAGGCGTAAGACTCAGTATCAAAATCTAAGCAG  973

seq1  ATTTTATACAGATTAGCTCTCGTTTTGTTTTTTGGGTTTTAAAATTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATACAGATTAGCTCTCGTTTTGTTTTTTGGGTTTTAAAATTTTTT  1023

seq1  TTTTTTTTGGTTTAATTTTGGTTTTTTGAGACAGCGTTTCTCTGTCTAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGTTTAATTTTGGTTTTTTGAGACAGCGTTTCTCTGTCTAGC  1073

seq1  CCTAGCTGTCCTCTATAGACCTGGCTGGCCTTGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGTCCTCTATAGACCTGGCTGGCCTTGAATTC  1111

seq1: chr3_129228380_129229612
seq2: B6Ng01-061F03.g_69_1268

seq1  GAATTCCAGGACAGCCAGGACTACATACACAAAGAAACCCTGTTTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGACTACATACACAAAGAAACCCTGTTTCAAAA  50

seq1  GGAAAAAAAAAACAAAGGAAGAAGAAAATAAAAATAAAAAGATCCCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAACAAAGGAAGAAGAAAATAAAAATAAAAAGATCCCCCAA  100

seq1  AAGATGCCTTCTTTACAAATGTCCAGTTGGCCAGCAGTCCCTGGAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCTTCTTTACAAATGTCCAGTTGGCCAGCAGTCCCTGGAACAAT  150

seq1  ATGAATTGGAACAAAACACAGGTAGACGGTGTTCAGTGGTCTAAGGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGGAACAAAACACAGGTAGACGGTGTTCAGTGGTCTAAGGCTAG  200

seq1  GGGAGTTGCCTCTGTTGGGTTCACTAAACATTTCTCTGGATGGGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGCCTCTGTTGGGTTCACTAAACATTTCTCTGGATGGGGAAAGG  250

seq1  AAGAAGGAATCATGTGCAGGAGCCTGTCTAGGCTCAACTTCTGACTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAATCATGTGCAGGAGCCTGTCTAGGCTCAACTTCTGACTTTAT  300

seq1  AACTAAAGAGTTGAGAGTTCTTAGGAATGCTAGTAAGCATCACCTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGAGTTGAGAGTTCTTAGGAATGCTAGTAAGCATCACCTACATG  350

seq1  CTGGAATGACACTGGAATCTTTCAAAAGCAGCAATCAGAAGGAAGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGACACTGGAATCTTTCAAAAGCAGCAATCAGAAGGAAGGAAGG  400

seq1  ATGCTGAGAAGCTATACCTGATGACTGGAATGTAGTTTTGCTGGGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGAAGCTATACCTGATGACTGGAATGTAGTTTTGCTGGGACCTC  450

seq1  AGAATGCAGTCTTATTTAGAGTAACGCCATTGTAGATGTAACCACAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAGTCTTATTTAGAGTAACGCCATTGTAGATGTAACCACAGTAC  500

seq1  CAATTACCATGGGACAACAGGAACCCAAGAGGAACAAGATTATAAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCATGGGACAACAGGAACCCAAGAGGAACAAGATTATAAGGGAC  550

seq1  AGGAGAAGGTGACACATGGAGAATAGAGAAGGTGATCTGAAGACAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGTGACACATGGAGAATAGAGAAGGTGATCTGAAGACAAGGTG  600

seq1  GTGTCTATAAGGCAGGGAATGCCAGCTTGCTCGAAGCCACCAAATGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATAAGGCAGGGAATGCCAGCTTGCTCGAAGCCACCAAATGCTAC  650

seq1  GAGTCAGAAGTGGGATAGTTTTCTAGCACAGACTCCAGACCCTTCATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAAGTGGGATAGTTTTCTAGCACAGACTCCAGACCCTTCATCTC  700

seq1  AGACTTGGAGGTTCTAGAACTTTTATCCCATGCATCTGCCAAGTTTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGAGGTTCTAGAACTTTTATCCCATGCATCTGCCAAGTTTGTGG  750

seq1  TTTGAAAGCAGTAGGAAGCAAAATGGAGTCACCGGTGTCACAGACTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGCAGTAGGAAGCAAAATGGAGTCACCGGTGTCACAGACTAGCA  800

seq1  AAAATAAACAGAAAAGGACAGGTCATGAAGGAAGTGAACCTCCACACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACAGAAAAGGACAGGTCATGAAGGAAGTGAACCTCCACACATA  850

seq1  TTTCTGTGAACAAGAACAGCCACTATGTGTACAACCTTAAACAAATGGTA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCTGTGAACAAGAACAGCCACTATGTGTAC-ACCTTAAACAAATGGTA  899

seq1  TGGCAACTTGACACAGAAAGTCTGTGAGAACATCTGCCCAGTAAGTGCTT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGCAACTTGACACAGAAAGTCTGTGAG-ACATCTGCCCAGTAAGTGCTT  948

seq1  ATTCAACTATAGACTCGAGTCACCTACTTACTGAGTCCTCTAACCAAAGA  1000
      |||||||||||||||||||||||||||||||||||| || ||||| ||||
seq2  ATTCAACTATAGACTCGAGTCACCTACTTACTGAGT-CTTTAACC-AAGA  996

seq1  GGATAGTTTTAAAATAACATGGGCCTCTCCTTGCCACTTCTGAAACCCTT  1050
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTTT-AAATAACATGGGCCTCTCCTTGCCACTTCTGAAACCCTT  1045

seq1  TAC-TTTCTGAGTGTACCCACCCATGGTTCCCCCATCACATCCCAACTCT  1099
      ||| ||||||||| ||||   |||||||| |||||||| |||||||||||
seq2  TACTTTTCTGAGTTTACC--ACCATGGTT-CCCCATCA-ATCCCAACTCT  1091

seq1  GTAGGTCCTACCTAGACCCACATCAAACTCATATCTTTGGTAAATTTCTG  1149
      ||| || ||| ||||||||| ||| ||||||| ||||  |||||||| ||
seq2  GTAAGT-CTA-CTAGACCCA-ATC-AACTCAT-TCTT--GTAAATTT-TG  1133

seq1  CTGTTGTTTAGCTTGGCCATAGCTTTGGCCTCCTTAGGAAATACCCCAAG  1199
      |||||||||||||  ||   ||||||||||| ||||||||     ||   
seq2  CTGTTGTTTAGCT--GC--AAGCTTTGGCCT-CTTAGGAA----TCC---  1171

seq1  AAAGCTCATAATATCCAACGTGGGCCAAATGAGC  1233
      | |||||   |||| | |||||||||  ||||||
seq2  AGAGCTC--TATATAC-ACGTGGGCC--ATGAGC  1200