BAC Information

Click to search

BAC

Clone NameB6Ng01-061K05
Chromosome3 (Build37)
Map Location 148,053,849 - 148,177,824
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061K05.bB6Ng01-061K05.g
ACCDH882256DH882257
length984388
definitionDH882256|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K05, 5' end.DH882257|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,176,843 - 148,177,824)(148,053,849 - 148,054,242)
sequence
gaattctggacaattgttctgagtctgtttttcttctgcgatgcttcctt
tgaacgcttcacttccaagcgagagcagccattttctttactattggtct
ccttggggggacaaggagcatcttccttccatacagcccctgaatggagg
aatgttgcaatgtcatagtgccttacttgtagaaggaaaatctattttcc
atttatattgtgaagctgtgagaaatgggcatacagatatggtgtagagc
cttgttttcaaggaggttgaaacaagtatccattttgggttgatcttctg
aagatgaaggtgtcagtgaatatataataacacacacacacacacacaca
cacacacacacacacacacacacagaaagagagagagagagagagagaga
gagagagagagttaacagtaagcatttaggtagaaaggtactgcaataaa
agttagagaataataaggagtgatgaccctaagggaaactgctatgaaat
tgagaataaaggatggtaatgggtatctaagacaaaagagaagaaaggct
taatatctactattatattttagcaaaatgcagaggaattactgaaagaa
gatatagcaatactttgaggattgttttgttgggtaagaggagagtaaag
acaatgcttgaaagggggctgtggaaaatagcatgtcgaaagcatggtgc
agtgagaaagaggagaatggagaaggcagggtggccttgcactgtctggg
cagagtgtggaagtgggacgtagtgaaactgactttctgctgaatccttg
agcctaaccttctggggggggggggcatgggacaccattttattctgttt
aggattctctccatccatgcaaggacacttgggttttgataagcgtctga
gatcaagtcacccatggggagtggtgggttggaaggaatatggataaacc
caaacctagtgacccttagatccctaaatcaagg
cattgaactctgggtttttaaaagagagatttggctttctggggcttaaa
gctccacacgagtttcgccatggcaatgagacaattgaagtaaacccaaa
agggagagatgcaaggagaatcagtgtcactgtgtcagaaacccggtgat
gacaatgacaaagaaggagtttcagtgagtccaggactgtagtgatgttg
aacatagtagagccaatgcagttctgtggttgtttaatactcgggttaga
agaagacaacgtaaaattaaggattacccagttatagcatgtactccgat
tatagtttttgttttctgattttcttttactttgtctgtgttggtggtct
gtgtggtgtatgtgtgtgctgtgtgtatgtgtgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148176843_148177824
seq2: B6Ng01-061K05.b_48_1031 (reverse)

seq1  CCTTGATTTACGGATCCTATGGGTGCCTAGGTCTGGGTGTCTCATAATCC  50
      |||||||||| |||| ||| ||||  |||||| ||||| | ||   || |
seq2  CCTTGATTTAGGGAT-CTAAGGGTCACTAGGTTTGGGTTTATCCATATTC  49

seq1  CTTCCAACCCAACACT-CCCATGGTTGACTTGATCTCAGACGCTTTATC-  98
      ||||||||||| |||| ||||||| |||||||||||||||||| ||||| 
seq2  CTTCCAACCCACCACTCCCCATGGGTGACTTGATCTCAGACGC-TTATCA  98

seq1  AAATCCAAGTGTCCTTGCATAGATGGAGAGAATCCTAAGCAGGATAGAAT  148
      ||| |||||||||||||||| ||||||||||||||||| ||| ||| |||
seq2  AAACCCAAGTGTCCTTGCATGGATGGAGAGAATCCTAAACAGAATAAAAT  148

seq1  GGTGTACCATG-CCCCCCCCCCCAGAAGGTTAGGCTCAAGGATTCAGCAG  197
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCCATGCCCCCCCCCCCCAGAAGGTTAGGCTCAAGGATTCAGCAG  198

seq1  AAAGTCAGTTTCACTACGT-CCACTTCCACACTCTGCCCAGACAGTGCAA  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGTCAGTTTCACTACGTCCCACTTCCACACTCTGCCCAGACAGTGCAA  248

seq1  GGCCACCCTGCCTTCTCCATTCTCCTCTTTCTCACTGCACCATGCTTTCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTGCCTTCTCCATTCTCCTCTTTCTCACTGCACCATGCTTTCG  298

seq1  ACATGCTATTTTCCACAGCCCCCTTTCAAGCATTGTCTTTACTCTCCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTATTTTCCACAGCCCCCTTTCAAGCATTGTCTTTACTCTCCTCT  348

seq1  TACCCAACAAAACAATCCTCAAAGTATTGCTATATCTTCTTTCAGTAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACAAAACAATCCTCAAAGTATTGCTATATCTTCTTTCAGTAATT  398

seq1  CCTCTGCATTTTGCTAAAATATAATAGTAGATATTAAGCCTTTCTTCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCATTTTGCTAAAATATAATAGTAGATATTAAGCCTTTCTTCTCT  448

seq1  TTTGTCTTAGATACCCATTACCATCCTTTATTCTCAATTTCATAGCAGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTAGATACCCATTACCATCCTTTATTCTCAATTTCATAGCAGTT  498

seq1  TCCCTTAGGGTCATCACTCCTTATTATTCTCTAACTTTTATTGCAGTACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAGGGTCATCACTCCTTATTATTCTCTAACTTTTATTGCAGTACC  548

seq1  TTTCTACCTAAATGCTTACTGTTAACTCTCTCTCTCTCTCTCTCTCTCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTAAATGCTTACTGTTAACTCTCTCTCTCTCTCTCTCTCTCTC  598

seq1  TCTCTCTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  648

seq1  TGTGTGTTATTATATATTCACTGACACCTTCATCTTCAGAAGATCAACCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTATTATATATTCACTGACACCTTCATCTTCAGAAGATCAACCC  698

seq1  AAAATGGATACTTGTTTCAACCTCCTTGAAAACAAGGCTCTACACCATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATACTTGTTTCAACCTCCTTGAAAACAAGGCTCTACACCATAT  748

seq1  CTGTATGCCCATTTCTCACAGCTTCACAATATAAATGGAAAATAGATTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCCCATTTCTCACAGCTTCACAATATAAATGGAAAATAGATTTT  798

seq1  CCTTCTACAAGTAAGGCACTATGACATTGCAACATTCCTCCATTCAGGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACAAGTAAGGCACTATGACATTGCAACATTCCTCCATTCAGGGG  848

seq1  CTGTATGGAAGGAAGATGCTCCTTGTCCCCCCAAGGAGACCAATAGTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGAAGGAAGATGCTCCTTGTCCCCCCAAGGAGACCAATAGTAAA  898

seq1  GAAAATGGCTGCTCTCGCTTGGAAGTGAAGCGTTCAAAGGAAGCATCGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGCTGCTCTCGCTTGGAAGTGAAGCGTTCAAAGGAAGCATCGCA  948

seq1  GAAGAAAAACAGACTCAGAACAATTGTCCAGAATTC  982
      ||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAACAGACTCAGAACAATTGTCCAGAATTC  984

seq1: chr3_148053849_148054242
seq2: B6Ng01-061K05.g_72_465

seq1  GAATTCCATTGAACTCTGGGTTTTTAAAAGAGAGATTTGGCTTTCTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGAACTCTGGGTTTTTAAAAGAGAGATTTGGCTTTCTGGGG  50

seq1  CTTAAAGCTCCACACGAGTTTCGCCATGGCAATGAGACAATTGAAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCTCCACACGAGTTTCGCCATGGCAATGAGACAATTGAAGTAAA  100

seq1  CCCAAAAGGGAGAGATGCAAGGAGAATCAGTGTCACTGTGTCAGAAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGGGAGAGATGCAAGGAGAATCAGTGTCACTGTGTCAGAAACCC  150

seq1  GGTGATGACAATGACAAAGAAGGAGTTTCAGTGAGTCCAGGACTGTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGACAATGACAAAGAAGGAGTTTCAGTGAGTCCAGGACTGTAGTG  200

seq1  ATGTTGAACATAGTAGAGCCAATGCAGTTCTGTGGTTGTTTAATACTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAACATAGTAGAGCCAATGCAGTTCTGTGGTTGTTTAATACTCGG  250

seq1  GTTAGAAGAAGACAACGTAAAATTAAGGATTACCCAGTTATAGCATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAGAAGACAACGTAAAATTAAGGATTACCCAGTTATAGCATGTAC  300

seq1  TCCGATTATAGTTTTTGTTTTCTGATTTTCTTTTACTTTGTCTGTGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATTATAGTTTTTGTTTTCTGATTTTCTTTTACTTTGTCTGTGTTGG  350

seq1  TGGTCTGTGTGGTGTATGTGTGTGCTGTGTGTATGTGTGTGGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTGTGGTGTATGTGTGTGCTGTGTGTATGTGTGTGGTG  394