BAC Information

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BAC

Clone NameB6Ng01-061M04
Chromosome3 (Build37)
Map Location 141,282,068 - 141,283,151
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M04.bB6Ng01-061M04.g
ACCDH882350DH882351
length1,2711,069
definitionDH882350|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M04, 5' end.DH882351|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcaaaaactaacgaagagaaaaaaaatggatgataaatatat
tttaaatgctcagagaagagaaaattaagcatagctgagattttttattt
ccctagtcagaatagctgagaaaaaattacagtgtgatggtttgtatatg
ccttgtccagggagtggcacttttaaaatgtcactgtgggcatgggcttt
aagaccctcatcctagctgcctgtaaaatctttcaagaggaactctcaat
tctgaatatctatgctccaaatgcaagggcagccacattcattaaagaca
ctttagtaaagctcaaagcagacattgcacctcacacaataatagtggga
gacttcaacataccactttcatcaatggacagatcgtggaaacagaaact
aaacagggacacagtgaatctaacagaagttatgaaacaaatggatttaa
cacatatctacagaacattttatcctaaaacaaaaggatataccttcttc
tcagcacctcatggtaccttctccaaaactgacgatataattggtcacaa
aacaggcctcaacagatacaaaaatattgaaattgtcccatgcatcctat
cacaccactatggactaaggctgatcttcaataacataaataatagaaag
ccaacattcacgtggaaactgaacaacactcttctcaatgataccttggt
caaggaagaaataaataaagaaattaaggactttttggagtttaatgaaa
atgaatccacaacatacccaaacttatgggacacaatgaaagcatttcta
agaggaaaactcatagctctgagtgcctccaagaagaaactagagagagc
acacacaagcagcttgccaacacaactaaatgctctagaacaaaaggaag
caaattcacccaagaggagtagactgcaggaaataatcaaactcagggcg
aaattaactaagtagaaacaagtagaactattcaaagaatcaaccaaacg
aagagctggttctttgagaaaataacaagatagatgacccttatccagac
tcactagaggcataggacagcatcctaataacaaatcagaaatgaatgag
acttacacaacgatcttgaagaattcaaacaccatcgatcttctaaaagc
tacttcacaaacctgggaactgatgaatggacaattctggacagaaatca
gttcaagtaatgatacgtatgatctaacggtcttattctcctcagaatag
aggacggcatatatggctttc
gaattctctgctattgtgtgatttacccatacatagatcaggacttgcat
gtagtcgaatttcaattgctaaatgagtcaatgtgaattaatctggaatg
agcagttggatggaggtaagtattagtgaattaaactacactttgctaaa
ctggtagatgatttgcagtgtctgctcactagaatggggcaagactaggc
tcacaatcagaggttggaagaggggcgtattctcttggttgtaactttgg
ttcatggaaaaggccaattccagttggcaccagtagagaggaccttctct
gatattctgaagcgccagtggttggatggcacagataaatggtcttgatc
tttgtttcaatttgcatatgctgagtgatgcaaatcccttccctttggga
ggtcaaggggcatgtgatctaatgcaacagatgcatggctagcagaaaga
aatggagagctcacttagctagttcttactgtgaagttttatcccagggg
tacaataaagatggcagttttgcggaatgaaatgtagaattggacacact
gagttatgaagatggagcagaatgggactgtgagttctgccatggtgata
agaccctgcaggattccgaggacatatttcggtagctgtctcagtgatgc
tcaccagtccccacactctgctttacacactaatttgaatgcacttcgct
tactgtagtccaggtgaaaatcagaagagaagtaaaaaggatcagatttt
aaggacattggtgatcattcaaaaatccatgcaacttgtacacgtttgtt
ttgcgtgcaatttattctggtcagaatactttctctattttgggagactg
taatttgtatacatttgaaaactaattattagtctataatacacagtgag
aattaggagggatgtaaagtaagctggcttttgcctgagggcttaattta
aaagatcctttagtgctctgtgatttcttactgactttctttaatgaagc
tattaaacccattgatggggaaggtttagctgagacacagtagtctttgt
gtctctattgttagtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141282068_141283151
seq2: B6Ng01-061M04.g_69_1137

seq1  GAATTCTCTGCTATTGTGTGATTTACCCATACATAGATCAGGACTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTATTGTGTGATTTACCCATACATAGATCAGGACTTGCAT  50

seq1  GTAGTCGAATTTCAATTGCTAAATGAGTCAATGTGAATTAATCTGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGAATTTCAATTGCTAAATGAGTCAATGTGAATTAATCTGGAATG  100

seq1  AGCAGTTGGATGGAGGTAAGTATTAGTGAATTAAACTACACTTTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGGATGGAGGTAAGTATTAGTGAATTAAACTACACTTTGCTAAA  150

seq1  CTGGTAGATGATTTGCAGTGTCTGCTCACTAGAATGGGGCAAGACTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGATGATTTGCAGTGTCTGCTCACTAGAATGGGGCAAGACTAGGC  200

seq1  TCACAATCAGAGGTTGGAAGAGGGGCGTATTCTCTTGGTTGTAACTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCAGAGGTTGGAAGAGGGGCGTATTCTCTTGGTTGTAACTTTGG  250

seq1  TTCATGGAAAAGGCCAATTCCAGTTGGCACCAGTAGAGAGGACCTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAAAAGGCCAATTCCAGTTGGCACCAGTAGAGAGGACCTTCTCT  300

seq1  GATATTCTGAAGCGCCAGTGGTTGGATGGCACAGATAAATGGTCTTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTGAAGCGCCAGTGGTTGGATGGCACAGATAAATGGTCTTGATC  350

seq1  TTTGTTTCAATTTGCATATGCTGAGTGATGCAAATCCCTTCCCTTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCAATTTGCATATGCTGAGTGATGCAAATCCCTTCCCTTTGGGA  400

seq1  GGTCAAGGGGCATGTGATCTAATGCAACAGATGCATGGCTAGCAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGGGCATGTGATCTAATGCAACAGATGCATGGCTAGCAGAAAGA  450

seq1  AATGGAGAGCTCACTTAGCTAGTTCTTACTGTGAAGTTTTATCCCAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGCTCACTTAGCTAGTTCTTACTGTGAAGTTTTATCCCAGGGG  500

seq1  TACAATAAAGATGGCAGTTTTGCGGAATGAAATGTAGAATTGGACACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAGATGGCAGTTTTGCGGAATGAAATGTAGAATTGGACACACT  550

seq1  GAGTTATGAAGATGGAGCAGAATGGGACTGTGAGTTCTGCCATGGTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGAAGATGGAGCAGAATGGGACTGTGAGTTCTGCCATGGTGATA  600

seq1  AGACCCTGCAGGATTCCGAGGACATATTTCGGTAGCTGTCTCAGTGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGCAGGATTCCGAGGACATATTTCGGTAGCTGTCTCAGTGATGC  650

seq1  TCACCAGTCCCCACACTCTGCTTTACACACTAATTTGAATGCACTTCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTCCCCACACTCTGCTTTACACACTAATTTGAATGCACTTCGCT  700

seq1  TACTGTAGTCCAGGTGAAAATCAGAAGAGAAGTAAAAAGGATCAGATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTCCAGGTGAAAATCAGAAGAGAAGTAAAAAGGATCAGATTTT  750

seq1  AAGGACATTGGTGATCATTCAAAAATCCATGCAACTTGTACACGTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATTGGTGATCATTCAAAAATCCATGCAACTTGTACACGTTTGTT  800

seq1  TTGCGTGCAATTTATTCTGGTCAGAATACTTTCTCTATTTTGGGAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGCAATTTATTCTGGTCAGAATACTTTCTCTATTTTGGGAGACTG  850

seq1  TAATTTGTATACATTTGAAAACTAATTATTAGTCTATAATACACAGTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTATACATTTGAAAACTAATTATTAGTCTATAATACACAGTGAG  900

seq1  AAATTAGGAGGGATGTAAAGTAAGCTGGCTTTTTGCCTGAGGGCTTAATT  950
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -AATTAGGAGGGATGTAAAGTAAGCTGGC-TTTTGCCTGAGGGCTTAATT  948

seq1  TAAAAGAATCCTTTAGGTGCCTCTGTGATTTCTTACTGACTTTTCTCTAA  1000
      |||||| |||||||| ||| |||||||||||||||||||| ||||| |||
seq2  TAAAAG-ATCCTTTA-GTG-CTCTGTGATTTCTTACTGAC-TTTCTTTAA  994

seq1  TGAAGCTATTTAAAACTCATTGATGGGGAAGGGTTTAGCTGAAGATCACA  1050
      ||||||||||  |||| ||||||||||||| |||||||||| ||| ||| 
seq2  TGAAGCTATT--AAACCCATTGATGGGGAA-GGTTTAGCTG-AGA-CAC-  1038

seq1  AGTAAGTTCTTGTGTCTCTAATTGTTTAGTGGAA  1084
      ||| |||  |||||||||| |||| |||||||||
seq2  AGT-AGTCTTTGTGTCTCT-ATTG-TTAGTGGAA  1069