BAC Information

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BAC

Clone NameB6Ng01-061M20
Chromosome3 (Build37)
Map Location 156,849,217 - 157,006,500
singlet/doubletdoublet
Overlap geneNegr1
Upstream geneLOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M20.bB6Ng01-061M20.g
ACCDH882382DH882383
length3391,019
definitionDH882382|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M20, 5' end.DH882383|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,006,162 - 157,006,500)(156,849,217 - 156,850,236)
sequence
tgcaaaatgaatgtttttattgtcttgatgtggtaattaatcaatcaatc
tatttagggtgctcaatccaaacttgattttcacaatggaactcatgaaa
attaacattataattgaaacatcaaaatgtaacttgtatcaataccagtt
tacagcacatggttttattagtgaccacttttttagtaatgataatgaaa
agtgaaaaagaacccctaacgctcttagttcatgttatgagctgatggtc
attattgcaaagtgaaatggcttagttttctccaatctaatttcaaacaa
taaaagtttgctttggagtttggggtgggggtgtggaga
gaattctctgtatataacccatacaacacataaacatctatagcgtttta
taatttgaatatgaatatacacacatgcaaacatatatgtaccatgcata
tttttgagcactggtatatatatttttttcttatatttattataggggac
tcacctcttcacttgtatgatatttaacacttgtctgggaatcatccctt
agtaacttcaatagacatcacatgactatgaacaaattacttattttctg
accctgctcatctggtacacagtggcagccaagaccccctggtacctctg
ggagctgatatctgctcctccttcccaggttttcttggaatattgtccct
gacagcctcttagagtaaaagaccctgatgagggaagcacagactgggca
tggagcagaaattataaggaagcacactcccttaagagccccatttcatt
ggccagtgagaagaagaaacctttttcttaggtatctggagcaggctgac
aggtgggaggaaatgctattgttttgtgaatcattgcaattaagtattat
accaatgtattacttttgtgtgagccactatgtcgcaaactgtgagatta
catgagtaacagagaaggaagggccagggcagaggtggtgtgaggctggg
tgctgttgaatcccttgctggcttgtagacgctttactttggatttggtc
ctcacacagcaggaagacagtgagaagtctctgggatcttctacagagac
acaaatctcaaccctgaggctgagtgattgcctggtattgtactgcaaaa
caaggaaggcactaataacatttctgaggttccacaatcatgacttcatt
attcctcaagccacactttcttgtacatcaaacccttgcactggggtgtg
agatttcaacgtaaaagatgtggaatgatacaagcatttgatgcttactt
tagtgatgctttctattgtgaatttatttgtagaaaaaaactagaaacat
aatgcagaacatctgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157006162_157006500
seq2: B6Ng01-061M20.b_51_389 (reverse)

seq1  TCTCCACACCCCCACCCCAAACTCCAAAGCAAACTTTTATTGTTTGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACACCCCCACCCCAAACTCCAAAGCAAACTTTTATTGTTTGAAAT  50

seq1  TAGATTGGAGAAAACTAAGCCATTTCACTTTGCAATAATGACCATCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGAGAAAACTAAGCCATTTCACTTTGCAATAATGACCATCAGCT  100

seq1  CATAACATGAACTAAGAGCGTTAGGGGTTCTTTTTCACTTTTCATTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATGAACTAAGAGCGTTAGGGGTTCTTTTTCACTTTTCATTATCA  150

seq1  TTACTAAAAAAGTGGTCACTAATAAAACCATGTGCTGTAAACTGGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAAAAGTGGTCACTAATAAAACCATGTGCTGTAAACTGGTATTG  200

seq1  ATACAAGTTACATTTTGATGTTTCAATTATAATGTTAATTTTCATGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTTACATTTTGATGTTTCAATTATAATGTTAATTTTCATGAGTT  250

seq1  CCATTGTGAAAATCAAGTTTGGATTGAGCACCCTAAATAGATTGATTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGAAAATCAAGTTTGGATTGAGCACCCTAAATAGATTGATTGAT  300

seq1  TAATTACCACATCAAGACAATAAAAACATTCATTTTGCA  339
      |||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCACATCAAGACAATAAAAACATTCATTTTGCA  339

seq1: chr3_156849217_156850236
seq2: B6Ng01-061M20.g_69_1087

seq1  GAATTCTCTGTATATAACCCATACAACACATAAACATCTATAGCGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTATATAACCCATACAACACATAAACATCTATAGCGTTTTA  50

seq1  TAATTTGAATATGAATATACACACATGCAAACATATATGTACCATGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAATATGAATATACACACATGCAAACATATATGTACCATGCATA  100

seq1  TTTTTGAGCACTGGTATATATATTTTTTTCTTATATTTATTATAGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGCACTGGTATATATATTTTTTTCTTATATTTATTATAGGGGAC  150

seq1  TCACCTCTTCACTTGTATGATATTTAACACTTGTCTGGGAATCATCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTCACTTGTATGATATTTAACACTTGTCTGGGAATCATCCCTT  200

seq1  AGTAACTTCAATAGACATCACATGACTATGAACAAATTACTTATTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTCAATAGACATCACATGACTATGAACAAATTACTTATTTTCTG  250

seq1  ACCCTGCTCATCTGGTACACAGTGGCAGCCAAGACCCCCTGGTACCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTCATCTGGTACACAGTGGCAGCCAAGACCCCCTGGTACCTCTG  300

seq1  GGAGCTGATATCTGCTCCTCCTTCCCAGGTTTTCTTGGAATATTGTCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGATATCTGCTCCTCCTTCCCAGGTTTTCTTGGAATATTGTCCCT  350

seq1  GACAGCCTCTTAGAGTAAAAGACCCTGATGAGGGAAGCACAGACTGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCTCTTAGAGTAAAAGACCCTGATGAGGGAAGCACAGACTGGGCA  400

seq1  TGGAGCAGAAATTATAAGGAAGCACACTCCCTTAAGAGCCCCATTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGAAATTATAAGGAAGCACACTCCCTTAAGAGCCCCATTTCATT  450

seq1  GGCCAGTGAGAAGAAGAAACCTTTTTCTTAGGTATCTGGAGCAGGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGAGAAGAAGAAACCTTTTTCTTAGGTATCTGGAGCAGGCTGAC  500

seq1  AGGTGGGAGGAAATGCTATTGTTTTGTGAATCATTGCAATTAAGTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGGAAATGCTATTGTTTTGTGAATCATTGCAATTAAGTATTAT  550

seq1  ACCAATGTATTACTTTTGTGTGAGCCACTATGTCGCAAACTGTGAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTATTACTTTTGTGTGAGCCACTATGTCGCAAACTGTGAGATTA  600

seq1  CATGAGTAACAGAGAAGGAAGGGCCAGGGCAGAGGTGGTGTGAGGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTAACAGAGAAGGAAGGGCCAGGGCAGAGGTGGTGTGAGGCTGGG  650

seq1  TGCTGTTGAATCCCTTGCTGGCTTGTAGACGCTTTACTTTGGATTTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGAATCCCTTGCTGGCTTGTAGACGCTTTACTTTGGATTTGGTC  700

seq1  CTCACACAGCAGGAAGACAGTGAGAAGTCTCTGGGATCTTCTACAGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGCAGGAAGACAGTGAGAAGTCTCTGGGATCTTCTACAGAGAC  750

seq1  ACAAATCTCAACCCTGAGGCTGAGTGATTGCCTGGTATTGTACTGCAAAA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAAATCTCAACCCTGAGGCTGAGTGATTGCCTGGTATTGTACTGC-AAA  799

seq1  ACAAGGAAGGCACTAATAACATTTCTGAGGTTCCACAATCATGACTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGGCACTAATAACATTTCTGAGGTTCCACAATCATGACTTCAT  849

seq1  TATTCCTCAAGCCACAC-TTCTTGTACATCAAAACCCTTGCACTGGGGTG  899
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TATTCCTCAAGCCACACTTTCTTGTACATC-AAACCCTTGCACTGGGGTG  898

seq1  TGAGATTTCAACGT-AAAGATGTGGAATGATACAAGCATTTGATGCTTAC  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAGATTTCAACGTAAAAGATGTGGAATGATACAAGCATTTGATGCTTAC  948

seq1  TTTAGTGATGCTTTCTATTGTGAATTTATTTGTAGAAAAAAAACTAGAAA  998
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTAGTGATGCTTTCTATTGTGAATTTATTTGTAG-AAAAAAACTAGAAA  997

seq1  GCATAATGCAGAACA-CTGAATT  1020
       |||||||||||||| |||||||
seq2  -CATAATGCAGAACATCTGAATT  1019