BAC Information

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BAC

Clone NameB6Ng01-061P02
Chromosome3 (Build37)
Map Location 54,911,341 - 55,017,875
singlet/doubletdoublet
Overlap geneSpg20, A730037C10Rik, Sohlh2
Upstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik
Downstream geneDclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P02.bB6Ng01-061P02.g
ACCDH882482DH882483
length1,1251,050
definitionDH882482|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P02, 5' end.DH882483|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,016,733 - 55,017,875)(54,911,341 - 54,912,391)
sequence
gaattcctttctccgtgttcaatttcccacaagtctcaagatagctggca
aggattttgagctcagtagattctgcaggaatttctcccaggcatggggt
tgacattaaccctttaaagcacccctttgtcatgccaagacaatctgttt
gtatacagttttccccccaataatatttttgcttcttaaaaaataaaaaa
aagctttttggggctcccacttgcctctttccttgaattcaggctttggg
gcatttttgcccagcatttgacttacttctgccactctgaaaacgagctt
accactgcactgggaaaggaatgttacagaacaccttctagcaacgggtt
cagaaatcaggatttggggagctggaagacagttctgtgactaagagaac
gggttgctcctgcagaggacccaggttcaattcccagaacccacatggtt
gctcacaaggatctgtaactgcagccccaggggattcagtgccctctttt
ggcattttcaggcaccagacaagaaagtggtgcatacatacatgcaggca
aggcacatagaaactcttttaaaagtcagaatttagtaattaaagatagt
tcaattatagcatctcactaggaggtaaaatcagcatgtcaatttgacat
ttttgaatatagtaaataaaataaaataaaatagacctctagcgtgagag
caggcttctcacaccttgctgtttcctgagcatgacacaggggagggttt
tagcatggcacaggggagtgccaggatgagcctacagcagagagagatca
gtaccttcttggctctgtctgtgcactgaccccgatactcagacagcatt
ttttacttttcaatagttcctagttcaaacgtgagttgagactgtgggga
aaaataatctttgcaacacttgcaaggttgaaacttgttttgggtgtttt
aaaatggtgcagttctgcctaagccctaagcctgattttaaatcaggtct
tatgtgaggacagctgaaaggatagaatttatgttttatagatgctatca
gtttctcatgcagctcatgcccatctcagaaaaattaaactgacaagaag
tgttctttgcagatcacttttcaaa
gaattcaaagatgatgtatggaaaccattcatgctgaacatgcagtcttc
agtgcagagaaaataacaggtttgaaaggagtggaaaccttggctctggc
agggacgtgctgtaggtctggaatccgcaatgtaaacttttggggcgttc
atctttttgtccaaaggagccacattatttgtgcatgagaaagtctgaaa
ttaaaaaaaaaaaaaaaaggatagggctggagagatggctcagtggctaa
gagcagtgactgcttgtccaaagatcgtgagttcaattgccagcaaccac
atggttgctcacaaccatctgtaatgggatctgatgccctcttctggtgt
gtctgaaggcaggtacagggtactcacatacataaaataaataaatcttt
taaaaaatgaaagggcatatttatttttattttgggtatatgggtgtttt
gcctgcatatatgtatgtacatatacttcacatgtgcagtaaccatggag
gaaggtgtcagatcacctgaaactggagatagagatggcttgtgagccac
tatgtgggtggtgggaactgaaccaggttctctgaaagagcatccagtgc
tcttaaacacagctgtctctccagcccaagggaaatgaaataaaacagct
agatacctctgcttggtttgtgaaaatgatcctgctacaatttttttcag
aaatatgattttgctgaattgcaaaaggcccgttaactaattaattaagc
tgtaagttactgcttaagctgtaaccaatgggctggttggctgagcagag
ctcgtcagattacactaggccgcctttcatttgactatcaatgctgtcag
atcatgctgtatttctcagaaagtgcacctcaccttgttttactcaaata
aatactactgagcttaattggtctaaacaatctttcttttaagaaacatc
gtcaggttttcagagagaataagatgaatttgtaaaatcatcttctttag
catgtttgtcaagacaacggtatgaaatctagggagacttggtttcggtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55016733_55017875
seq2: B6Ng01-061P02.b_47_1171 (reverse)

seq1  TTTGAAAAGTGGTCTTTGCAAAGAAACACTTCTTGTCAGTTTAATTTTTC  50
      ||||||||||| ||  ||||||| ||||||||||||||||||||||||  
seq2  TTTGAAAAGTGATC--TGCAAAG-AACACTTCTTGTCAGTTTAATTTT--  45

seq1  TCTGAGATGGGCATGAGGCTGCATGAGAGAACTGATAGCATTCTATAAAA  100
      |||||||||||||||| ||||||||||| ||||||||||| |||||||||
seq2  TCTGAGATGGGCATGA-GCTGCATGAGA-AACTGATAGCA-TCTATAAAA  92

seq1  CATTAAATTCTTATTCCTTTCAGCTTGTCCTCAACATAAGAGCCTGATTT  150
      || ||||||||   |||||||||| ||||||| |||||||| ||||||||
seq2  CA-TAAATTCT--ATCCTTTCAGC-TGTCCTC-ACATAAGA-CCTGATTT  136

seq1  AAAAATTCAGGCTTAGGGCTTAGGCAGAACTGCACCATTTTAAAAACACC  200
      ||||  ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAA--TCAGGCTTAGGGCTTAGGCAGAACTGCACCATTTT-AAAACACC  183

seq1  CAAAACAAGTTTCAACCTTGCAAGTGTTGCAAAGATTATTTTTCCCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAGTTTCAACCTTGCAAGTGTTGCAAAGATTATTTTTCCCCACA  233

seq1  GTCTCAACTCACGTTTGAACTAGGAACTATTGAAAAGTAAAAAATGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACTCACGTTTGAACTAGGAACTATTGAAAAGTAAAAAATGCTGT  283

seq1  CTGAGTATCGGGGTCAGTGCACAGACAGAGCCAAGAAGGTACTGATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATCGGGGTCAGTGCACAGACAGAGCCAAGAAGGTACTGATCTCT  333

seq1  CTCCTGCTGTAGGCTCATCCTGGCACTCCCCTGTGCCATGCTAAAACCCT  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CTGCTGTAGGCTCATCCTGGCACTCCCCTGTGCCATGCTAAAACCCT  382

seq1  CCCCTGTGTCATGCTCAGGAAACAGCAAGGTGTGAGAAGCCTGCTCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGTCATGCTCAGGAAACAGCAAGGTGTGAGAAGCCTGCTCTCAC  432

seq1  GCTAGAGGTCTATTTTATTTTATTTTATTTACTATATTCAAAAATGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGGTCTATTTTATTTTATTTTATTTACTATATTCAAAAATGTCAA  482

seq1  ATTGACATGCTGATTTTACCTCCTAGTGAGATGCTATAATTGAACTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGCTGATTTTACCTCCTAGTGAGATGCTATAATTGAACTATCT  532

seq1  TTAATTACTAAATTCTGACTTTTAAAAGAGTTTCTATGTGCCTTGCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACTAAATTCTGACTTTTAAAAGAGTTTCTATGTGCCTTGCCTGC  582

seq1  ATGTATGTATGCACCACTTTCTTGTCTGGTGCCTGAAAATGCCAAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATGCACCACTTTCTTGTCTGGTGCCTGAAAATGCCAAAAGAG  632

seq1  GGCACTGAATCCCCTGGGGCTGCAGTTACAGATCCTTGTGAGCAACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAATCCCCTGGGGCTGCAGTTACAGATCCTTGTGAGCAACCATG  682

seq1  TGGGTTCTGGGAATTGAACCTGGGTCCTCTGCAGGAGCAACCCGTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGGGAATTGAACCTGGGTCCTCTGCAGGAGCAACCCGTTCTCT  732

seq1  TAGTCACAGAACTGTCTTCCAGCTCCCCAAATCCTGATTTCTGAACCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGAACTGTCTTCCAGCTCCCCAAATCCTGATTTCTGAACCCGT  782

seq1  TGCTAGAAGGTGTTCTGTAACATTCCTTTCCCAGTGCAGTGGTAAGCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAGGTGTTCTGTAACATTCCTTTCCCAGTGCAGTGGTAAGCTCG  832

seq1  TTTTCAGAGTGGCAGAAGTAAGTCAAATGCTGGGCAAAAATGCCCCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGTGGCAGAAGTAAGTCAAATGCTGGGCAAAAATGCCCCAAAG  882

seq1  CCTGAATTCAAGGAAAGAGGCAAGTGGGAGCCCCAAAAAGCTTTTTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTCAAGGAAAGAGGCAAGTGGGAGCCCCAAAAAGCTTTTTTTTA  932

seq1  TTTTTTAAGAAGCAAAAATATTATTGGGGGGAAAACTGTATACAAACAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGAAGCAAAAATATTATTGGGGGGAAAACTGTATACAAACAGA  982

seq1  TTGTCTTGGCATGACAAAGGGGTGCTTTAAAGGGTTAATGTCAACCCCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGGCATGACAAAGGGGTGCTTTAAAGGGTTAATGTCAACCCCAT  1032

seq1  GCCTGGGAGAAATTCCTGCAGAATCTACTGAGCTCAAAATCCTTGCCAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGAAATTCCTGCAGAATCTACTGAGCTCAAAATCCTTGCCAGC  1082

seq1  TATCTTGAGACTTGTGGGAAATTGAACACGGAGAAAGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAGACTTGTGGGAAATTGAACACGGAGAAAGGAATTC  1125

seq1: chr3_54911341_54912391
seq2: B6Ng01-061P02.g_68_1117

seq1  GAATTCAAAGATGATGTATGGAAACCATTCATGCTGAACATGCAGTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATGATGTATGGAAACCATTCATGCTGAACATGCAGTCTTC  50

seq1  AGTGCAGAGAAAATAACAGGTTTGAAAGGAGTGGAAACCTTGGCTCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGAAAATAACAGGTTTGAAAGGAGTGGAAACCTTGGCTCTGGC  100

seq1  AGGGACGTGCTGTAGGTCTGGAATCCGCAATGTAAACTTTTGGGGCGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGTGCTGTAGGTCTGGAATCCGCAATGTAAACTTTTGGGGCGTTC  150

seq1  ATCTTTTTGTCCAAAGGAGCCACATTATTTGTGCATGAGAAAGTCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGTCCAAAGGAGCCACATTATTTGTGCATGAGAAAGTCTGAAA  200

seq1  TTAAAAAAAAAAAAAAAAGGATAGGGCTGGAGAGATGGCTCAGTGGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAGGATAGGGCTGGAGAGATGGCTCAGTGGCTAA  250

seq1  GAGCAGTGACTGCTTGTCCAAAGATCGTGAGTTCAATTGCCAGCAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGACTGCTTGTCCAAAGATCGTGAGTTCAATTGCCAGCAACCAC  300

seq1  ATGGTTGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGT  350

seq1  GTCTGAAGGCAGGTACAGGGTACTCACATACATAAAATAAATAAATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGGCAGGTACAGGGTACTCACATACATAAAATAAATAAATCTTT  400

seq1  TAAAAAATGAAAGGGCATATTTATTTTTATTTTGGGTATATGGGTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGAAAGGGCATATTTATTTTTATTTTGGGTATATGGGTGTTTT  450

seq1  GCCTGCATATATGTATGTACATATACTTCACATGTGCAGTAACCATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATATATGTATGTACATATACTTCACATGTGCAGTAACCATGGAG  500

seq1  GAAGGTGTCAGATCACCTGAAACTGGAGATAGAGATGGCTTGTGAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTCAGATCACCTGAAACTGGAGATAGAGATGGCTTGTGAGCCAC  550

seq1  TATGTGGGTGGTGGGAACTGAACCAGGTTCTCTGAAAGAGCATCCAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGTGGTGGGAACTGAACCAGGTTCTCTGAAAGAGCATCCAGTGC  600

seq1  TCTTAAACACAGCTGTCTCTCCAGCCCAAGGGAAATGAAATAAAACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACACAGCTGTCTCTCCAGCCCAAGGGAAATGAAATAAAACAGCT  650

seq1  AGATACCTCTGCTTGGTTTGTGAAAATGATCCTGCTACAATTTTTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTCTGCTTGGTTTGTGAAAATGATCCTGCTACAATTTTTTTCAG  700

seq1  AAATATGATTTTGCTGAATTGCAAAAGGCCCGTTAACTAATTAATTAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGATTTTGCTGAATTGCAAAAGGCCCGTTAACTAATTAATTAAGC  750

seq1  TGTAAGTTACTGCTTAAGCTGTAACCAATGGGCTGGTTGGCTGAGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTACTGCTTAAGCTGTAACCAATGGGCTGGTTGGCTGAGCAGAG  800

seq1  CTCGTCAGATTACACTAGGCCGCCTTTCATTTGACTATCAATGCTGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAGATTACACTAGGCCGCCTTTCATTTGACTATCAATGCTGTCAG  850

seq1  ATCATGCTGTATTTCTCAGAAAGTGCACCTCACCTTGTTTTACTCAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTGTATTTCTCAGAAAGTGCACCTCACCTTGTTTTACTCAAATA  900

seq1  AATACTACTGAGCTTAATTGGTCTAAACAATCTTCCTTTTAGGAAACATC  950
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  AATACTACTGAGCTTAATTGGTCTAAACAATCTTTCTTTTAAGAAACATC  950

seq1  GTCAGGTTTCCAGAGAGAAT-AGATGAATATGTAAAATTCATCTCCTTTA  999
      ||||||||| |||||||||| |||||||| ||||||| |||||| |||||
seq2  GTCAGGTTTTCAGAGAGAATAAGATGAATTTGTAAAA-TCATCTTCTTTA  999

seq1  GCATTGTTTGTCAAGACCAACGTTATGAAATCTA-GGAGACTTTGTTTCG  1048
      ||| |||||||||||| ||||| ||||||||||| |||||||| ||||||
seq2  GCA-TGTTTGTCAAGA-CAACGGTATGAAATCTAGGGAGACTTGGTTTCG  1047

seq1  GTT  1051
      |||
seq2  GTT  1050