BAC Information

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BAC

Clone NameB6Ng01-061P20
Chromosome3 (Build37)
Map Location 37,901,874 - 38,031,251
singlet/doubletdoublet
Overlap geneEG665821
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
Downstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061P20.bB6Ng01-061P20.g
ACCDH882516DH882517
length1,1561,144
definitionDH882516|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P20, 5' end.DH882517|Mus musculus domesticus DNA, BAC clone: B6Ng01-061P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,030,084 - 38,031,251)(37,901,874 - 37,903,019)
sequence
gaattctctaatttcaccctatttaataccccatagttttctgtagaact
cagatgtggctatggattctaagtggtatttcttctagaggaagtgaggt
tgaggtccgtaaagcccttctctgagggtccacagtaaataataaaaagg
aacacccagatctgaaaccaagcgtcccagtgccatgtcatgtatgctgc
tttcggggtggtggtccaagcctgacccttccaatggtcagcagagcaga
acagtcttcacgctgttctcaaaagagcaatgcctgtgaagaaacccttc
tgtgggtataagaaggacttggccatcctccacagcaatatgttgctgag
agctagccacatcacaagatcttggacattttaagagttagatttaatac
aagaggcagataccagcaatcacataattcaaaataaaaacttcaatgag
aatgtctgtccacaggggaaggattccaagaggttggagcctgtcagagt
tcgttccaactcccctaaatccagagtgcggttgtccaaatctcagcttg
ggcttgatgcacggggagcacgcggatgtggataagcagacccactcctg
ctaccccccccaacaccccccaagatttggccagttttctggaaaataac
aataaatttgccaaacttaatccaaacttgctgggctccactgagccttt
catccatgatgaatgtgaagtcttcgccctggcggtaagacacacgtgtc
ttcatcttgcttttcttgtggtttgatgagaaaagccacagacattcaca
agtgtgcaggaaattcaatggagcctttagaagggccccgttttgtttgg
cacgtagatctcacagcctggaagaagacaaaccaaaattccaaaggaag
tttaatgtggtgatttcatgagaagcaaacgccattgcatcagttctacc
aagtgaagccagaagggacacaatcctgactatacaccatgggacttgtg
cctggtcctcacgttctttactctaatggtagcagtcatttcagtggtta
cataatacaggttattggagtttcttatcaccttgtagtaacatacaaat
ctaggatatacacagttgacttttcgctaaatgaggacattcatccaatg
gatgat
gaattcaggttctctccaagagtttaaagtgtgctccggccccatcaaat
aacttttgtatccttttgccacatgcatatgtgtgcatgtatgtgtttgt
gtggtgcatggatatatataattatgttttcatgagtgtgtttctgtgta
gacacataaaattgacatcaagtgtctttctcaattgctctctactttat
ttgtattgggaaggggtctcagtgagctcttccagagcttgctaattctg
gtttcgatctactaaaccagcttgcttgaaaagcctgtctccacctctca
gaaagctgggagtacaagcagcctccacagctgcctggcttttatgtggg
tgctggaatctggactagacgtgcactgtatccactgagtcatcttgccc
gctggaacagttatatttttaccatgcctctaatattattactgttattg
gtcttattattgttattattattattattattattattattattaatttc
caaagaaagttggcagaagaaaacgactgagaatctagctcattggtcag
cataccaccctgatcgtctcattatttgtagcctcaatgagaatgagagt
caaaatgtaaatttcaggaatgtaggaggccattattattattaattatt
attattattattttaatttttgttgacagcagctatgtctgtgtggaggg
gtcatcgtgtgacaatctggtaaatcccactagatggatgactgcagagg
agaagtcactgacccacagtagaaggcctggattttaaaacaaaggggat
ggctgtgagtttattgttgttgactgctgtgtttacatgagaataatgtc
tacaatgcacttagctttgaaattcttttggaactctgggaaaagacagt
ggcttgcagtgtgagatctctcgttgtagaaggaaagggaaactgcaaac
ttccttgcattgggcagttatgcttaggtggtcttgccgtgccgtcaatt
gggatgagctcttagtgagatctggctagttccattcatccctttttctt
ccaggagttgagaacagcccctctcgtaggagctctttcttctcccgtcc
ggcgaaagccgggtgagctagaagggtgctcacccaaattcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38030084_38031251
seq2: B6Ng01-061P20.b_48_1203 (reverse)

seq1  ATCATCCATTTGAATTGAAATTGTCCTCATTTATGCAGAAAAGTCAACTG  50
      |||||||||| ||  ||||  |||||||||||| || |||||||||||||
seq2  ATCATCCATTGGA--TGAA--TGTCCTCATTTA-GC-GAAAAGTCAACTG  44

seq1  TGTATATCCTAAGATTTGTATGTTACTACAAGGTGAATAAGAAACT-CAA  99
      |||||||||| |||||||||||||||||||||||| |||||||||| |||
seq2  TGTATATCCT-AGATTTGTATGTTACTACAAGGTG-ATAAGAAACTCCAA  92

seq1  TAACTTGTATTATGTATACCACTGAATTGACTGCCTACCATTTAGAGTAA  149
      |||| ||||||||||| ||||||||| |||||| |||||| |||||||||
seq2  TAACCTGTATTATGTA-ACCACTGAAATGACTG-CTACCA-TTAGAGTAA  139

seq1  AGAACGTGGGGACCAGGCACAAGTCCCATGGTGTTATAGTCAGGATTGTG  199
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AGAACGTGAGGACCAGGCACAAGTCCCATGGTG-TATAGTCAGGATTGTG  188

seq1  TCCCTTCTGGCTTCACTTGGTAGAACTGATGCAATGGCGTTTGCTTCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTGGCTTCACTTGGTAGAACTGATGCAATGGCGTTTGCTTCTCA  238

seq1  TGAAATCACCACATTAAACTTCCTTTGGAATTTTGGTTTTGTCTTCTTCC  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAAATCACCACATTAAACTTCCTTTGGAATTTTGG-TTTGTCTTCTTCC  287

seq1  AGGCTGTGGGATCTACGTGCCAAACAAAACGGGGCCCTTCTAAAGGCTCC  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGAGATCTACGTGCCAAACAAAACGGGGCCCTTCTAAAGGCTCC  337

seq1  ATTGAATTTCCTGCACACTTGTGAATGTCTGTGGCTTTTCTCATCAAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTCCTGCACACTTGTGAATGTCTGTGGCTTTTCTCATCAAACC  387

seq1  ACAAGAAAAGCAAGATGAAGACACGTGTGTCTTACCGCCAGGGCGAAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAGCAAGATGAAGACACGTGTGTCTTACCGCCAGGGCGAAGAC  437

seq1  TTCACATTCATCATGGATGAAAGGCTCAGTGGAGCCCAGCAAGTTTGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTCATCATGGATGAAAGGCTCAGTGGAGCCCAGCAAGTTTGGAT  487

seq1  TAAGTTTGGCAAATTTATTGTTATTTTCCAGAAAACTGGCCAAATCTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGGCAAATTTATTGTTATTTTCCAGAAAACTGGCCAAATCTTGG  537

seq1  GGGGTGTTGGGGGGGGTAGCAGGAGTGGGTCTGCTTATCCACATCCGCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTGGGGGGGGTAGCAGGAGTGGGTCTGCTTATCCACATCCGCGT  587

seq1  GCTCCCCGTGCATCAAGCCCAAGCTGAGATTTGGACAACCGCACTCTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCGTGCATCAAGCCCAAGCTGAGATTTGGACAACCGCACTCTGGA  637

seq1  TTTAGGGGAGTTGGAACGAACTCTGACAGGCTCCAACCTCTTGGAATCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGAGTTGGAACGAACTCTGACAGGCTCCAACCTCTTGGAATCCT  687

seq1  TCCCCTGTGGACAGACATTCTCATTGAAGTTTTTATTTTGAATTATGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTGGACAGACATTCTCATTGAAGTTTTTATTTTGAATTATGTGA  737

seq1  TTGCTGGTATCTGCCTCTTGTATTAAATCTAACTCTTAAAATGTCCAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTATCTGCCTCTTGTATTAAATCTAACTCTTAAAATGTCCAAGA  787

seq1  TCTTGTGATGTGGCTAGCTCTCAGCAACATATTGCTGTGGAGGATGGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGATGTGGCTAGCTCTCAGCAACATATTGCTGTGGAGGATGGCCA  837

seq1  AGTCCTTCTTATACCCACAGAAGGGTTTCTTCACAGGCATTGCTCTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCTTATACCCACAGAAGGGTTTCTTCACAGGCATTGCTCTTTTG  887

seq1  AGAACAGCGTGAAGACTGTTCTGCTCTGCTGACCATTGGAAGGGTCAGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCGTGAAGACTGTTCTGCTCTGCTGACCATTGGAAGGGTCAGGC  937

seq1  TTGGACCACCACCCCGAAAGCAGCATACATGACATGGCACTGGGACGCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCACCACCCCGAAAGCAGCATACATGACATGGCACTGGGACGCTT  987

seq1  GGTTTCAGATCTGGGTGTTCCTTTTTATTATTTACTGTGGACCCTCAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGATCTGGGTGTTCCTTTTTATTATTTACTGTGGACCCTCAGAG  1037

seq1  AAGGGCTTTACGGACCTCAACCTCACTTCCTCTAGAAGAAATACCACTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTTACGGACCTCAACCTCACTTCCTCTAGAAGAAATACCACTTA  1087

seq1  GAATCCATAGCCACATCTGAGTTCTACAGAAAACTATGGGGTATTAAATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATAGCCACATCTGAGTTCTACAGAAAACTATGGGGTATTAAATA  1137

seq1  GGGTGAAATTAGAGAATTC  1168
      |||||||||||||||||||
seq2  GGGTGAAATTAGAGAATTC  1156

seq1: chr3_37901874_37903019
seq2: B6Ng01-061P20.g_70_1213

seq1  GAATTCAGGTTCTCTCCAAGAGTTTAAAGTGTGCTCCGGCCCCATCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTCTCCAAGAGTTTAAAGTGTGCTCCGGCCCCATCAAAT  50

seq1  AACTTTTGTATCCTTTTGCCACATGCATATGTGTGCATGTATGTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGTATCCTTTTGCCACATGCATATGTGTGCATGTATGTGTTTGT  100

seq1  GTGGTGCATGGATATATATAATTATGTTTTCATGAGTGTGTTTCTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCATGGATATATATAATTATGTTTTCATGAGTGTGTTTCTGTGTA  150

seq1  GACACATAAAATTGACATCAAGTGTCTTTCTCAATTGCTCTCTACTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAAAATTGACATCAAGTGTCTTTCTCAATTGCTCTCTACTTTAT  200

seq1  TTGTATTGGGAAGGGGTCTCAGTGAGCTCTTCCAGAGCTTGCTAATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGGGAAGGGGTCTCAGTGAGCTCTTCCAGAGCTTGCTAATTCTG  250

seq1  GTTTCGATCTACTAAACCAGCTTGCTTGAAAAGCCTGTCTCCACCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGATCTACTAAACCAGCTTGCTTGAAAAGCCTGTCTCCACCTCTCA  300

seq1  GAAAGCTGGGAGTACAAGCAGCCTCCACAGCTGCCTGGCTTTTATGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGGGAGTACAAGCAGCCTCCACAGCTGCCTGGCTTTTATGTGGG  350

seq1  TGCTGGAATCTGGACTAGACGTGCACTGTATCCACTGAGTCATCTTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAATCTGGACTAGACGTGCACTGTATCCACTGAGTCATCTTGCCC  400

seq1  GCTGGAACAGTTATATTTTTACCATGCCTCTAATATTATTACTGTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACAGTTATATTTTTACCATGCCTCTAATATTATTACTGTTATTG  450

seq1  GTCTTATTATTGTTATTATTATTATTATTATTATTATTATTATTAATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTATTGTTATTATTATTATTATTATTATTATTATTATTAATTTC  500

seq1  CAAAGAAAGTTGGCAGAAGAAAACGACTGAGAATCTAGCTCATTGGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGTTGGCAGAAGAAAACGACTGAGAATCTAGCTCATTGGTCAG  550

seq1  CATACCACCCTGATCGTCTCATTATTTGTAGCCTCAATGAGAATGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACCCTGATCGTCTCATTATTTGTAGCCTCAATGAGAATGAGAGT  600

seq1  CAAAATGTAAATTTCAGGAATGTAGGAGGCCATTATTATTATTAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTAAATTTCAGGAATGTAGGAGGCCATTATTATTATTAATTATT  650

seq1  ATTATTATTATTTTAATTTTTGTTGACAGCAGCTATGTCTGTGTGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTTTAATTTTTGTTGACAGCAGCTATGTCTGTGTGGAGGG  700

seq1  GTCATCGTGTGACAATCTGGTAAATCCCACTAGATGGATGACTGCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCGTGTGACAATCTGGTAAATCCCACTAGATGGATGACTGCAGAGG  750

seq1  AGAAGTCACTGACCCACAGTAGAAGGCCTGGATTTTAAAACAAA-GGGAT  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAGTCACTGACCCACAGTAGAAGGCCTGGATTTTAAAACAAAGGGGAT  800

seq1  GGCTGTGAGTTTATTGTTGTTGACTGCTGTGTTTACATGAGAATAATGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGTTTATTGTTGTTGACTGCTGTGTTTACATGAGAATAATGTC  850

seq1  TACAATGCACTTAGCTTTGAAATTCTTTTGGAACTCT-GGAAAAGACAGT  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACAATGCACTTAGCTTTGAAATTCTTTTGGAACTCTGGGAAAAGACAGT  900

seq1  GGCTTGCAGTGTGAGATCTCTCGTTGTCAGAAGCAAA-GGACACTGCAAA  947
      ||||||||||||||||||||||||||| ||||| ||| ||| ||||||||
seq2  GGCTTGCAGTGTGAGATCTCTCGTTGT-AGAAGGAAAGGGAAACTGCAAA  949

seq1  CTTCCTTGCATTTGGGCAGTTATGCTTAGGT-GTC-TGCCGTGTCTGTCA  995
      |||||||||| |||||||||||||||||||| ||| ||||||| | ||||
seq2  CTTCCTTGCA-TTGGGCAGTTATGCTTAGGTGGTCTTGCCGTG-CCGTCA  997

seq1  ATTTGGGATGAGCTCTTTAGTGAGATCT-GCTAGTTCCATTCATCCCTTT  1044
      | ||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  A-TTGGGATGAGCTC-TTAGTGAGATCTGGCTAGTTCCATTCATCCCTTT  1045

seq1  TCCTCCCAGGACGTGAG-ACAGCCCCTCTCGTCAGGAGCTC-TTCTTCTC  1092
      | || ||||||  |||| |||||||||||||| |||||||| ||||||||
seq2  TTCTTCCAGGAGTTGAGAACAGCCCCTCTCGT-AGGAGCTCTTTCTTCTC  1094

seq1  CCTTTCCGTGCAGAGGCAGGGGCCAGCATGACAGGGGGTGCTCA--CAGA  1140
      ||  ||||   | || |  |||  |||  ||    |||||||||  || |
seq2  CC-GTCCGGCGAAAGCC--GGGTGAGCTAGA---AGGGTGCTCACCCAAA  1138

seq1  TTCGGA  1146
      ||||||
seq2  TTCGGA  1144