BAC Information

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BAC

Clone NameB6Ng01-062A10
Chromosome3 (Build37)
Map Location 38,779,758 - 38,962,604
singlet/doubletdoublet
Overlap geneFat4
Upstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A10.bB6Ng01-062A10.g
ACCDH882544DH882545
length928320
definitionDH882544|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A10, 5' end.DH882545|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,961,660 - 38,962,604)(38,779,758 - 38,780,077)
sequence
gaattcagaaaagaaatatttgttcttttctttgtttgtttgtttgtttt
tgtttttttgtttttcaagacagggtttctctgtgtagccttggctgtcc
tggaactcactgtgtagaccaggctggcctcaaactcagaaatccacctg
cctgtgcctcccgagtgctgggattaaaggcgtgcgccaccactgcccgg
cttgtttgttcttttctgttttggttatgagactgtgtgtgcccgcatat
tggcatgtgctttactgcaggtacattcccaggtcagaggagagtatcag
atgcctgcagctggagttccaggcaagtgagccatcacatatgggtacta
aaagcaaagttggatcctatgcaagcactgtgccctctcttagttactga
gccatctctccaggttctagaaatctttactcttaaaggcatggatcact
ttccctgctagttttttcctgttgttcttacattcatttaaatactgtta
tttagtgtgttatttaaatactatgtatttcctttcataaaaaatgaagt
aggtctgctaactttctctcacaatgctcaggaagaaaataaaaggtcac
aatataactcagctgaatccttataaaaagacatttcttctgaattaaag
aaaataaaaggtctaaatgcatgcaacacaaaataaaatgtacaaatgta
tcctactttttactttgcagatagcttccacattttctacatgttttatt
tgggtttacacatgaatttgtgtaagtgatcagcaggagtgagactttgt
gaacatgtatgtatgtacacagtgcacttcatacctctacatgcatgaca
ccacaaacaatatgtggttttctcaatgaatatttcaagccgctccacct
ctccacacagtcgagtagcgatgaggga
tctgagacaccagggacttggaaggacctggtatctgtatgacaaggagg
cctgtccactgtgggtacagacagagcaaaaagtcagggcagcagtgaag
ataagagtagaaacatggggtgtgatccatcaggctgatgatgttgagct
gcatgcacaacacaagatcagacacctgtgttaaaatcgcagcacagcta
aagggcacctttgccagaccactcaggatagcctcagactgaggtcattg
cctctggaaaatgtggtgtggagggcatgaggggtgataaggagtagaga
agactggagtgtgtgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38961660_38962604
seq2: B6Ng01-062A10.b_46_973 (reverse)

seq1  TCCCTCATCGCTACTACTGACTTGTGTGTGAAGGGGTGGAGCCGGGCTAT  50
      |||||||||||||||   |||   |||||| || ||||||||  |||| |
seq2  TCCCTCATCGCTACT--CGAC---TGTGTGGAGAGGTGGAGC--GGCT-T  42

seq1  GGAGATTATTCATTTGAGAAAAACACATATATGGTTTGTGTGTGTTCATG  100
      |   | |||||| ||||||||| |||  |||| ||||||| ||| |||||
seq2  G--AAATATTCA-TTGAGAAAACCAC--ATATTGTTTGTG-GTG-TCATG  85

seq1  CATGTAGAGGTATGAAGTGCACTGTGTACATACATACATGTTTCACAAAG  150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATGTAGAGGTATGAAGTGCACTGTGTACATACATACATG-TTCACAAAG  134

seq1  TCTCACTCCTGCTGATCACTTACACAAATTCATGTGTAAAACCAAATAAA  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTCACTCCTGCTGATCACTTACACAAATTCATGTGTAAACCCAAATAAA  184

seq1  ACATGTAGAAAATGTGGAAGCTATCTGCAAAGTAAAAAGTAGGATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAGAAAATGTGGAAGCTATCTGCAAAGTAAAAAGTAGGATACATT  234

seq1  TGTACATTTTTATTTTGTGTTGCATGCATTTAGACCTTTTATTTTCTTTA  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACA-TTTTATTTTGTGTTGCATGCATTTAGACCTTTTATTTTCTTTA  283

seq1  ATTCAGAAGAAATGTCTTTTTATAAGGATTCAGCTGAGTTATATTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAGAAATGTCTTTTTATAAGGATTCAGCTGAGTTATATTGTGAC  333

seq1  CTTTTATTTTCTTCCTGAGCATTGTGAGAGAAAGTTAGCAGACCTACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTCTTCCTGAGCATTGTGAGAGAAAGTTAGCAGACCTACTTC  383

seq1  ATTTTTTATGAAAGGAAATACATAGTATTTAAATAACACACTAAATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATGAAAGGAAATACATAGTATTTAAATAACACACTAAATAACA  433

seq1  GTATTTAAATGAATGTAAGAACAACAGGAAAAAACTAGCAGGGAAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAATGAATGTAAGAACAACAGGAAAAAACTAGCAGGGAAAGTGA  483

seq1  TCCATGCCTTTAAGAGTAAAGATTTCTAGAACCTGGAGAGATGGCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCTTTAAGAGTAAAGATTTCTAGAACCTGGAGAGATGGCTCAGT  533

seq1  AACTAAGAGAGGGCACAGTGCTTGCATAGGATCCAACTTTGCTTTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGAGAGGGCACAGTGCTTGCATAGGATCCAACTTTGCTTTTAGTA  583

seq1  CCCATATGTGATGGCTCACTTGCCTGGAACTCCAGCTGCAGGCATCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGTGATGGCTCACTTGCCTGGAACTCCAGCTGCAGGCATCTGAT  633

seq1  ACTCTCCTCTGACCTGGGAATGTACCTGCAGTAAAGCACATGCCAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTCTGACCTGGGAATGTACCTGCAGTAAAGCACATGCCAATATG  683

seq1  CGGGCACACACAGTCTCATAACCAAAACAGAAAAGAACAAACAAGCCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACACACAGTCTCATAACCAAAACAGAAAAGAACAAACAAGCCGGG  733

seq1  CAGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCACAGGCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCACAGGCAGGT  783

seq1  GGATTTCTGAGTTTGAGGCCAGCCTGGTCTACACAGTGAGTTCCAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGAGTTTGAGGCCAGCCTGGTCTACACAGTGAGTTCCAGGACA  833

seq1  GCCAAGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAAAACAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAAAACAAAAAC  883

seq1  AAACAAACAAACAAAGAAAAGAACAAATATTTCTTTTCTGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAGAAAAGAACAAATATTTCTTTTCTGAATTC  928

seq1: chr3_38779758_38780077
seq2: B6Ng01-062A10.g_75_394

seq1  TCTGAGACACCAGGGACTTGGAAGGACCTGGTATCTGTATGACAAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACACCAGGGACTTGGAAGGACCTGGTATCTGTATGACAAGGAGG  50

seq1  CCTGTCCACTGTGGGTACAGACAGAGCAAAAAGTCAGGGCAGCAGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCACTGTGGGTACAGACAGAGCAAAAAGTCAGGGCAGCAGTGAAG  100

seq1  ATAAGAGTAGAAACATGGGGTGTGATCCATCAGGCTGATGATGTTGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTAGAAACATGGGGTGTGATCCATCAGGCTGATGATGTTGAGCT  150

seq1  GCATGCACAACACAAGATCAGACACCTGTGTTAAAATCGCAGCACAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACAACACAAGATCAGACACCTGTGTTAAAATCGCAGCACAGCTA  200

seq1  AAGGGCACCTTTGCCAGACCACTCAGGATAGCCTCAGACTGAGGTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACCTTTGCCAGACCACTCAGGATAGCCTCAGACTGAGGTCATTG  250

seq1  CCTCTGGAAAATGTGGTGTGGAGGGCATGAGGGGTGATAAGGAGTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAAAATGTGGTGTGGAGGGCATGAGGGGTGATAAGGAGTAGAGA  300

seq1  AGACTGGAGTGTGTGAGTGT  320
      ||||||||||||||||||||
seq2  AGACTGGAGTGTGTGAGTGT  320