BAC Information

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BAC

Clone NameB6Ng01-062A21
Chromosome3 (Build37)9 (Build37)
Map Location 41,059,546 - 41,059,73715,776,655 - 15,777,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A21.bB6Ng01-062A21.g
ACCDH882566DH882567
length861926
definitionDH882566|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A21, 5' end.DH882567|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,546 - 41,059,737)(15,776,655 - 15,777,575)
sequence
gaattctttgttcaactccaagccccattttttaatggggtcatttggtt
ttctggagtttaccttcttgagttctttacatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatgatgtcttttgccttacagaagctttgcaagcaaa
ttgctctttctaactctgtgaagaattgaattggaattttgatggggatt
gcattgagcctttagattgctttcagcaggatcaccattttaactatatt
gattctgccaatccatgagaatgggagatctttctgtcttctgaggtctt
ccatttttttttcttcagagacttgaagttcttgtcatacagatcattta
cttccttggttagagtcaaaccaaagtatgtaatataatttgtgactatt
gtgaaggttgtcattttcctaatttctttctcagcctgtttatcctttgt
atagaggaaggccagtgatttttttttttcagttaattttatatccagct
acttcactgaagtttttttttttttttttttttttaatctggtttaggtg
ttctttggtggaatttttggggtcacttaagtttgctatcatatcatgtg
caaatagtaatactttgacctcatcctttccaatttgtatccccttgata
tccttttttattgtctaattgctctggctactacttcaagtactatgttg
aattggtagggagagagtgggcagccttttctagtccctgattttagtgt
gattgcttcaagtttctctccatttagctggatgttaactactggtttgc
tcatcggccct
gaattccactgaaaacacaagtaaaactaactatattggttggatttaaa
aatgtttagggaggtggggttaggaggagtgtaggacaacaactttggag
aaagcagaggtgtggctttctgcaatgttgctaagtaaagcaaaaggcct
tggcaccaagttcaccaagtctaaatgaacagaatcagcctggaggggat
ctctggccttagtgtggcttactcacaagagccttgtaaaagtagctctc
tcctccatcagggccaggatggaggtaggagaataccatctcctgttaga
gaggtagagtctagccaggaggctggaggagaaaggtgtggatctggaat
aggttgtttctaatgatgcatcaactacctctcccaataaaggaaacaca
ggcccccattaaaaggcacagttcagttggccttgcttgagccacccctt
cttgtccctcttaatttaccttgcttttgaccagtgaatcaaaggttgcc
aatctcccaaactgacctttgggtctaaagagataaatacaatgagtaga
tcctgctcaacactccagaatgctgagcaagggatccatggaaaatagaa
cttacctgttgtccctcatgtctgtagatgctgacaggttcagaccaggt
catcagtccctgggctcctgcagcagtggaatttatttagtagcttccaa
cacgtactcacatgagaggctctgtgtcttctgtttcctttccttgttgg
caagagctgtgtgccatatgctaggggatggaattcaaacctttagggaa
tgtgtgtgatttgaaaactgagtgggtgtatcatgtcctttcacttgatg
tgtttttggtaaacataccccccatgactttgaacagtgtcctgaaaccc
tgaatcctcttagggcaacatccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059546_41059737
seq2: B6Ng01-062A21.b_37_229 (reverse)

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  49
      ||||||||||||| ||||||||||||| | ||||||||||||||||| ||
seq2  TGCAAAGCTTCTGTAAGGCAAAAGACATCATCAATAAGACAAAAAGGCCA  50

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  100

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  149
      |||||||||||||| | ||||||||||||||||  | ||||||||| |||
seq2  AATATCCAATATATGTAAAGAACTCAAGAAGGTAAACTCCAGAAAACCAA  150

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  192
      || |||||||||||||||||||||  ||| | |||||||||||
seq2  ATGACCCCATTAAAAAATGGGGCTTGGAGTTGAACAAAGAATT  193

seq1: chr9_15776655_15777575
seq2: B6Ng01-062A21.g_71_996 (reverse)

seq1  TCTGGATGTTG-CCTAAGCTGATTCAGTGTTCTCAGGACACTGTTCAAAG  49
      ||||||||||| ||||||  ||||||| ||| ||||||||||||||||||
seq2  TCTGGATGTTGCCCTAAGAGGATTCAGGGTT-TCAGGACACTGTTCAAAG  49

seq1  TCAT-GGGGGTATGTTTA-CAGAAACACATC-AGTG-AATGACATGAATA  95
      |||| ||||||||||||| || ||||||||| |||| || |||||| |||
seq2  TCATGGGGGGTATGTTTACCAAAAACACATCAAGTGAAAGGACATG-ATA  98

seq1  CA-CCACTCAGGTTTTCAAATCACACACATTCCCTAAAGGTTTGAATTCC  144
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCA-GTTTTCAAATCACACACATTCCCTAAAGGTTTGAATTCC  147

seq1  AT-CCCTAGCATATGGCACACAGCTCTTGCCAACAAGGAAAGGAAACAGA  193
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAGCATATGGCACACAGCTCTTGCCAACAAGGAAAGGAAACAGA  197

seq1  AGACACAGAGCCTCTCATGTGAGTACGTGTTGGAAGCTACTAAATAAATT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAGCCTCTCATGTGAGTACGTGTTGGAAGCTACTAAATAAATT  247

seq1  CCACTGCTGCAGGAGCCCA-GGACTGATGACCTGGTCTGAACCTGTCAGC  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCACTGCTGCAGGAGCCCAGGGACTGATGACCTGGTCTGAACCTGTCAGC  297

seq1  ATCTACAGACATGAGGGACAACAGGTAAGTTCTATTTTCCATGGATCCCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGACATGAGGGACAACAGGTAAGTTCTATTTTCCATGGATCCCT  347

seq1  TGCTCAGCATTCTGGAGTGTTGAGCAGGATCTACTCATTGTATTTATCTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCATTCTGGAGTGTTGAGCAGGATCTACTCATTGTATTTATCTC  397

seq1  TTTAGACCCAAAGGTCAGTTTGGGAGATTGGCAACCTTTGATTCACTGGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCCAAAGGTCAGTTTGGGAGATTGGCAACCTTTGATTCACTGGT  447

seq1  CAAAAGCAAGGTAAATTAAGAGGGACAAGAAGGGGTGGCTCAAGCAAGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAGGTAAATTAAGAGGGACAAGAAGGGGTGGCTCAAGCAAGGC  497

seq1  CAACTGAACTGTGCCTTTTAATGGGGGCCTGTGTTTCCTTTATTGGGAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAACTGTGCCTTTTAATGGGGGCCTGTGTTTCCTTTATTGGGAGA  547

seq1  GGTAGTTGATGCATCATTAGAAACAACCTATTCCAGATCCACACCTTTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTGATGCATCATTAGAAACAACCTATTCCAGATCCACACCTTTCT  597

seq1  CCTCCAGCCTCCTGGCTAGACTCTACCTCTCTAACAGGAGATGGTATTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCCTCCTGGCTAGACTCTACCTCTCTAACAGGAGATGGTATTCT  647

seq1  CCTACCTCCATCCTGGCCCTGATGGAGGAGAGAGCTACTTTTACAAGGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCATCCTGGCCCTGATGGAGGAGAGAGCTACTTTTACAAGGCT  697

seq1  CTTGTGAGTAAGCCACACTAAGGCCAGAGATCCCCTCCAGGCTGATTCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGTAAGCCACACTAAGGCCAGAGATCCCCTCCAGGCTGATTCTG  747

seq1  TTCATTTAGACTTGGTGAACTTGGTGCCAAGGCCTTTTGCTTTACTTAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGACTTGGTGAACTTGGTGCCAAGGCCTTTTGCTTTACTTAGC  797

seq1  AACATTGCAGAAAGCCACACCTCTGCTTTCTCCAAAGTTGTTGTCCTACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCAGAAAGCCACACCTCTGCTTTCTCCAAAGTTGTTGTCCTACA  847

seq1  CTCCTCCTAACCCCACCTCCCTAAACATTTTTAAATCCAACCAATATAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTAACCCCACCTCCCTAAACATTTTTAAATCCAACCAATATAGT  897

seq1  TAGTTTTACTTGTGTTTTCAGTGGAATTC  921
      |||||||||||||||||||||||||||||
seq2  TAGTTTTACTTGTGTTTTCAGTGGAATTC  926