BAC Information

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BAC

Clone NameB6Ng01-062B17
Chromosome3 (Build37)
Map Location 53,998,099 - 54,126,035
singlet/doubletdoublet
Overlap geneTrpc4
Upstream geneLhfp, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B17.bB6Ng01-062B17.g
ACCDH882604DH882605
length1,0161,077
definitionDH882604|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B17, 5' end.DH882605|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,998,099 - 53,999,117)(54,124,941 - 54,126,035)
sequence
gaattctcagctaaatgttactttaaaattttaagatatttttctactgt
tagattggatgttgttgggcttgcagagatagatggctcagtggttaata
gcattgacttctcttacaaagaccctgagttcagctcccagaacccacat
gatacctcataacagtaactctagttccagagaattgcgtgctctcttct
gacctctgtgagcacctgcgtgtgtatgttgtacataaactgtcacaggt
gcgcacatacatgcaaataattaaatattttttaaaaagaaattttaagt
tctgttttctaggcagctgagtagatatctatttttgttacctaagaaaa
gcatcttttactcatcaatagagacaccattgttgtcgataatgattgtg
tgtttgatagcatgcatgatgcctgacttaattggcatgcaagtgctcac
actctgctttctctgtatgcttctagagatgatgatggactagcatggcc
tgaagcatggctcagttctattacaaaagaaatgtcaacgccccctacag
agaccgcatcccactgaggattgtcagagcagaatctgagctctcaccat
cagagaaagcctacttgaatgctgtggagaagggggactatgcaagcgtc
aagaagtctctggaggaagctgagatttattttaaaatcaacattaactg
catcgaccccctgggaaggaccgccctcctcattgccattgaaaatgaga
atctggagcttattgaactattgttgagtttcaatgtctatgtaggcgat
gcgctgcttcacgccatcagaaaagaggtggttggagccgtggagctact
gctgaaccacaaaaagccaagtggagagaagcagtgggtgtgagtgtggt
gttttcagtttatttgcccataggaagtttctttagatttgtaaacaccg
tgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtacagag
aacgcacaaagaagct
gaattctatctgccaaaggtacaaagaatctgaagcctccatccaaacat
ccagtagagagttgaaggcttagctattgcttagatcttggtttaagctt
caactcagccactgaacgtcaagacaaatacagagagtctccataaatct
cacaagccttttcttcttcagttgtctatggaaaatttatttgagacact
ttaaatatttaagcgtagaattcaaataaataacacatgccaacctgcct
gagctaaacgctgcacaggacattaaaaaaatcgctagaatttgtagaat
tctaaggggaatgtcagagaagtacattgcaaatttgaacttactggcat
ttctatttaaaacattaaaaaaattaagaatttattttcagagtgatgat
ctatattcagtgatgtggtcctttggaaacctgggccgctgtaaatgtat
tcacggagattttccacgtggtttttgtcaggctggttttgagggtggag
ggcaggcatcactgtgttgattacacagagcatggtgcccagggatgttg
tgcttggcaagggatcatgggactggacagctactcactggctgaattcc
atgtctatcaaggggtagaacatgtagaagcacacatccatgccattact
gtcaggttacctctacatatgctagaaaacagactttgccttttgagaat
agtgttttgctacccttgactttccatttatctattttattcctccccta
atattactcagagaatgtggtggcgcgccttcaggtacttgatcactcaa
gtgtgtcaggttgctcttcatgtcttggcaagaaatgacctttttatttt
ctttctctattttgcactgtttaatcaccagccagtaaataaaatataat
ttaagaaaatttggtatacacataggcaactcataaaacatacattttct
tttcagatgataaacattttgaaaatattcatcatcttacaaaaatcact
atcatttttaatagccagtttctttgaaactaatacgattattctacgaa
gatgcaggattcacagctgtacacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53998099_53999117
seq2: B6Ng01-062B17.b_46_1061

seq1  GAATTCTCAGCTAAATGTTACTTTAAAATTTTAAGATATTTTTCTACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTAAATGTTACTTTAAAATTTTAAGATATTTTTCTACTGT  50

seq1  TAGATTGGATGTTGTTGGGCTTGCAGAGATAGATGGCTCAGTGGTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGATGTTGTTGGGCTTGCAGAGATAGATGGCTCAGTGGTTAATA  100

seq1  GCATTGACTTCTCTTACAAAGACCCTGAGTTCAGCTCCCAGAACCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGACTTCTCTTACAAAGACCCTGAGTTCAGCTCCCAGAACCCACAT  150

seq1  GATACCTCATAACAGTAACTCTAGTTCCAGAGAATTGCGTGCTCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTCATAACAGTAACTCTAGTTCCAGAGAATTGCGTGCTCTCTTCT  200

seq1  GACCTCTGTGAGCACCTGCGTGTGTATGTTGTACATAAACTGTCACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGTGAGCACCTGCGTGTGTATGTTGTACATAAACTGTCACAGGT  250

seq1  GCGCACATACATGCAAATAATTAAATATTTTTTAAAAAGAAATTTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACATACATGCAAATAATTAAATATTTTTTAAAAAGAAATTTTAAGT  300

seq1  TCTGTTTTCTAGGCAGCTGAGTAGATATCTATTTTTGTTACCTAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTAGGCAGCTGAGTAGATATCTATTTTTGTTACCTAAGAAAA  350

seq1  GCATCTTTTACTCATCAATAGAGACACCATTGTTGTCGATAATGATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTTACTCATCAATAGAGACACCATTGTTGTCGATAATGATTGTG  400

seq1  TGTTTGATAGCATGCATGATGCCTGACTTAATTGGCATGCAAGTGCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATAGCATGCATGATGCCTGACTTAATTGGCATGCAAGTGCTCAC  450

seq1  ACTCTGCTTTCTCTGTATGCTTCTAGAGATGATGATGGACTAGCATGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTTTCTCTGTATGCTTCTAGAGATGATGATGGACTAGCATGGCC  500

seq1  TGAAGCATGGCTCAGTTCTATTACAAAAGAAATGTCAACGCCCCCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATGGCTCAGTTCTATTACAAAAGAAATGTCAACGCCCCCTACAG  550

seq1  AGACCGCATCCCACTGAGGATTGTCAGAGCAGAATCTGAGCTCTCACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGCATCCCACTGAGGATTGTCAGAGCAGAATCTGAGCTCTCACCAT  600

seq1  CAGAGAAAGCCTACTTGAATGCTGTGGAGAAGGGGGACTATGCAAGCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGCCTACTTGAATGCTGTGGAGAAGGGGGACTATGCAAGCGTC  650

seq1  AAGAAGTCTCTGGAGGAAGCTGAGATTTATTTTAAAATCAACATTAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTCTGGAGGAAGCTGAGATTTATTTTAAAATCAACATTAACTG  700

seq1  CATCGACCCCCTGGGAAGGACCGCCCTCCTCATTGCCATTGAAAATGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGACCCCCTGGGAAGGACCGCCCTCCTCATTGCCATTGAAAATGAGA  750

seq1  ATCTGGAGCTTATTGAACTATTGTTGAGTTTCAATGTCTATGTAGGCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGCTTATTGAACTATTGTTGAGTTTCAATGTCTATGTAGGCGAT  800

seq1  GCGCTGCTTCACGCCATCAGAAAAGAGGTGGTTGGAGCCGTGGAGCTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCTTCACGCCATCAGAAAAGAGGTGGTTGGAGCCGTGGAGCTACT  850

seq1  GCTGAACCACAAAAAGCCAAGTGGAGAGAAGCAGGTGGGTGTGAGTGTGG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGAACCACAAAAAGCCAAGTGGAGAGAAGCA-GTGGGTGTGAGTGTGG  899

seq1  TGTTTTCAGTTTATTTTGCCCATAGGAAGTTTCTTTAGATTTGTAAACAC  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTTTA-TTTGCCCATAGGAAGTTTCTTTAGATTTGTAAACAC  948

seq1  CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA-A  999
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CGTGTGTGTGTGTGTGTGTGTGTGTGTG-GTGTGTGTGTGTGTGTGTACA  997

seq1  GTGACTGCTAGAAAGAAGCT  1019
      | ||  || | |||||||||
seq2  GAGAACGC-ACAAAGAAGCT  1016

seq1: chr3_54124941_54126035
seq2: B6Ng01-062B17.g_65_1141 (reverse)

seq1  CCTGTGTACCAGCTGTGAAATCCTGGCATCTTCTGTAGAAATAAATCTGT  50
      |||||||| |||||||| |||||| |||||||| ||||||   |||| ||
seq2  CCTGTGTA-CAGCTGTG-AATCCT-GCATCTTC-GTAGAA--TAATC-GT  43

seq1  ATTAGTTTTCATAAGAAAACTGGCTATTTAAAAAATGATAGTGAATTTTT  100
      ||||| ||||| ||| ||||||||||||  ||||||||||||||   |||
seq2  ATTAG-TTTCA-AAG-AAACTGGCTATT--AAAAATGATAGTGA---TTT  85

seq1  TTGTAAGATGATGAATTATTTTTCAAAATGTTTATCATCCTGAAAAGAAA  150
      ||||||||||||||||   ||||||||||||||||||| |||||||||||
seq2  TTGTAAGATGATGAAT--ATTTTCAAAATGTTTATCAT-CTGAAAAGAAA  132

seq1  ATGTATGTTTTATGAGTTGCCTATGTGTATACCAAATTTTCTTAAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTTTTATGAGTTGCCTATGTGTATACCAAATTTTCTTAAATTAT  182

seq1  ATTTTATTTACTGGCTGGTGATTAAACAGTGCAAAATAGAGAAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTACTGGCTGGTGATTAAACAGTGCAAAATAGAGAAAGAAAAT  232

seq1  AAAAAGGTCATTTCTTGCCAAGACATGAAGAGCAACCTGACACACTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTCATTTCTTGCCAAGACATGAAGAGCAACCTGACACACTTGAG  282

seq1  TGATCAAGTACCTGAAGGCGCGCCACCACATTCTCTGAGTAATATTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGTACCTGAAGGCGCGCCACCACATTCTCTGAGTAATATTAGGG  332

seq1  GAGGAATAAAATAGATAAATGGAAAGTCAAGGGTAGCAAAACACTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAAAATAGATAAATGGAAAGTCAAGGGTAGCAAAACACTATTCT  382

seq1  CAAAAGGCAAAGTCTGTTTTCTAGCATATGTAGAGGTAACCTGACAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCAAAGTCTGTTTTCTAGCATATGTAGAGGTAACCTGACAGTAA  432

seq1  TGGCATGGATGTGTGCTTCTACATGTTCTACCCCTTGATAGACATGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGATGTGTGCTTCTACATGTTCTACCCCTTGATAGACATGGAAT  482

seq1  TCAGCCAGTGAGTAGCTGTCCAGTCCCATGATCCCTTGCCAAGCACAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAGTGAGTAGCTGTCCAGTCCCATGATCCCTTGCCAAGCACAACA  532

seq1  TCCCTGGGCACCATGCTCTGTGTAATCAACACAGTGATGCCTGCCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGCACCATGCTCTGTGTAATCAACACAGTGATGCCTGCCCTCCA  582

seq1  CCCTCAAAACCAGCCTGACAAAAACCACGTGGAAAATCTCCGTGAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAACCAGCCTGACAAAAACCACGTGGAAAATCTCCGTGAATACA  632

seq1  TTTACAGCGGCCCAGGTTTCCAAAGGACCACATCACTGAATATAGATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCGGCCCAGGTTTCCAAAGGACCACATCACTGAATATAGATCAT  682

seq1  CACTCTGAAAATAAATTCTTAATTTTTTTAATGTTTTAAATAGAAATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGAAAATAAATTCTTAATTTTTTTAATGTTTTAAATAGAAATGCC  732

seq1  AGTAAGTTCAAATTTGCAATGTACTTCTCTGACATTCCCCTTAGAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTCAAATTTGCAATGTACTTCTCTGACATTCCCCTTAGAATTCT  782

seq1  ACAAATTCTAGCGATTTTTTTAATGTCCTGTGCAGCGTTTAGCTCAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTAGCGATTTTTTTAATGTCCTGTGCAGCGTTTAGCTCAGGCA  832

seq1  GGTTGGCATGTGTTATTTATTTGAATTCTACGCTTAAATATTTAAAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCATGTGTTATTTATTTGAATTCTACGCTTAAATATTTAAAGTGT  882

seq1  CTCAAATAAATTTTCCATAGACAACTGAAGAAGAAAAGGCTTGTGAGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAAATTTTCCATAGACAACTGAAGAAGAAAAGGCTTGTGAGATT  932

seq1  TATGGAGACTCTCTGTATTTGTCTTGACGTTCAGTGGCTGAGTTGAAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGACTCTCTGTATTTGTCTTGACGTTCAGTGGCTGAGTTGAAGCT  982

seq1  TAAACCAAGATCTAAGCAATAGCTAAGCCTTCAACTCTCTACTGGATGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAGATCTAAGCAATAGCTAAGCCTTCAACTCTCTACTGGATGTT  1032

seq1  TGGATGGAGGCTTCAGATTCTTTGTACCTTTGGCAGATAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGGCTTCAGATTCTTTGTACCTTTGGCAGATAGAATTC  1077