BAC Information

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BAC

Clone NameB6Ng01-062B21
Chromosome3 (Build37)
Map Location 107,466,803 - 107,613,260
singlet/doubletdoublet
Overlap geneAhcyl1, Csf1
Upstream gene4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik
Downstream geneLOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B21.bB6Ng01-062B21.g
ACCDH882610DH882611
length1,1101,080
definitionDH882610|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B21, 5' end.DH882611|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,612,140 - 107,613,260)(107,466,803 - 107,467,890)
sequence
gaattcatgtatgctcaaatcaagtagttgtctgggctgctttacaacat
attataaagttgattaaaaaaaaacacaacaaaataaaaacaaaactaaa
aaccgagaacgcattatcctaaattctggaagctagggtgtggcaggtca
cttccttctggagaattcaagagacagtccgtgctctgcccagccttgct
ctgggctgctggcagcccttggcattccttggcctgcaggccccttatga
tcgcttcttcctctgctcagtaggtcttctgcttcgagccttcctatttc
ctcttattgcaaagggtagcagttgcattagacttagagataacactaac
cattccctctccttggctttgcttgattagttggttctcactgaaggaat
gggaatctctctcctcagttgctgccagctgtgttgctgttggaacctga
aggcttcatctagcctcactaaaccgatattaatactctagctctctcaa
aggactgaggttagcatccccagtgttagtctgagacaagaatgctgcat
gcttgcttgggctcctggagcagatggactgggaggattttttcagcctt
agttgcatgaataagaggacaatcaggccaccatttctcccttaggagaa
caagtattcagaaaggtttaggcccatggagagcagagcaggagtcaaac
cctcgtgtttctgctttcattttgcacatgcatcttttagtcacatcacc
attcgtttttacactatcccactccagtattcttttttttaaatttggat
ttatttatctatttatttatttatttatttattatatgtaagtacactgt
agctgacttcagacactccagaagagggagtcagatctcgtcacgaatgg
ttgtgacccactatgtggttgctgggattgaactctggaccttcagagag
cagttgggtgctctactcactgagccactcacagcccccactccagtatt
ctgaaatgtgctcagtcactgtctagcctgcagtcactttgggttccagg
aacaacagacatattgataaacattctctatgacaaagactgttctgtct
ttatgccctt
gaattctcttagagcatgaatcaggatgtactttctccaagtcctcttta
agatctcagtttataatttttattttctatttttgtggcaagtgtcaatc
aaaagtggcaccatttctataaaactaacaccagacaaggtctacagttc
tgaacagattatatagttatatttgtttcaccttggtccaatttatcatt
ctttcttccatctatatagacttcccttcaaatagtttaggttgcagaag
cacagatgcccacaagtttgctcttaaaggataaaccctaaagatagggc
tcagtgttttatactgagtaatggctcaagaaatcagccgtcagcataag
ctgcgtgaggcagagctgagaaattttgcttatggctccagttcactgat
gctataaactatgagctggaaacatcagagtctgagactagtatttttct
agcctcaactcttcactctttgcttcaaaggttcaaacgagatgttggta
actaaccacctgagctgttcctcagggttaacaataattttttttcttaa
ttaaaagaaataaaacagaaataaatgctaagggacaaaattcaacttgc
tagaatgcagtttagttaaaactagaacaatgagagagactggtggaagg
ctggactacaaacccaagtgaacctactgagttgaacaagcaacgcatct
ctgccagacatgccaccttacacaggaaacagggcttagagtgtctatgg
gaagctgacatgcaccacctacatctaacctacctggctgggaagtacca
tcctggctcctctgaagaagtgaaagagcactagttccagcagctaggaa
caggctcttttaaggcaatttagacactgtagattgttccacatagaaga
tgcttagcattttctgttaataaggtaactaaatacgatcaaagttctca
gaaatggtaaagaatcaactttctgggcagcagagttaaccccttttagt
gacttgggtgagaacctttgacctcagttcacctaagagctatgagcaag
ttcctgtgtggtctgcaaactcaatgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107612140_107613260
seq2: B6Ng01-062B21.b_44_1153 (reverse)

seq1  AAGGGCATAAAGACAGAAACAGTCCTTTGTCATAGAG-ATGTTTATCAAT  49
      |||||||||||||||| |||||| ||||||||||||| ||||||||||||
seq2  AAGGGCATAAAGACAG-AACAGT-CTTTGTCATAGAGAATGTTTATCAAT  48

seq1  ATGTCCTGTTGTTCCTGGAACCCAAAGTGACTGCAGGCTTAAGACAGTGA  99
      |||| ||||||||||||||||||||||||||||||||||  |||||||||
seq2  ATGT-CTGTTGTTCCTGGAACCCAAAGTGACTGCAGGCT--AGACAGTGA  95

seq1  CTGGAGCACATTTCAAGAATACTGGAGTGGGGGCTGGTGAGTTGGCTCAG  149
      || ||||||||||| |||||||||||||||||||| ||||| ||||||||
seq2  CT-GAGCACATTTC-AGAATACTGGAGTGGGGGCT-GTGAG-TGGCTCAG  141

seq1  TGGGTAAGAGCACCCAACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCA  199
      || || ||||||||||||||||| |||||||||||||||||| |||||||
seq2  TGAGT-AGAGCACCCAACTGCTC-TCTGAAGGTCCAGAGTTC-AATCCCA  188

seq1  GCAACCACATAGTGGGTCACAACCATTCGTGACGAGATCTGACTCCCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATAGTGGGTCACAACCATTCGTGACGAGATCTGACTCCCTCT  238

seq1  TCTGGAGTGTCTGAAGTCAGCTACAGTGTACTTACATATAATAAATAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGTCTGAAGTCAGCTACAGTGTACTTACATATAATAAATAAAT  288

seq1  AAATAAATAAATAGATAAATAAATCCAAATTTAAAAAAAAGAATACTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAGATAAATAAATCCAAATTTAAAAAAAAGAATACTGGA  338

seq1  GTGGGATAGTGTAAAAACGAATGGTGATGTGACTAAAAGATGCATGTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATAGTGTAAAAACGAATGGTGATGTGACTAAAAGATGCATGTGCA  388

seq1  AAATGAAAGCAGAAACACGAGGGTTTGACTCCTGCTCTGCTCTCCATGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGCAGAAACACGAGGGTTTGACTCCTGCTCTGCTCTCCATGGG  438

seq1  CCTAAACCTTTCTGAATACTTGTTCTCCTAAGGGAGAAATGGTGGCCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCTTTCTGAATACTTGTTCTCCTAAGGGAGAAATGGTGGCCTGA  488

seq1  TTGTCCTCTTATTCATGCAACTAAGGCTGAAAAAATCCTCCCAGTCCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTTATTCATGCAACTAAGGCTGAAAAAATCCTCCCAGTCCATC  538

seq1  TGCTCCAGGAGCCCAAGCAAGCATGCAGCATTCTTGTCTCAGACTAACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGAGCCCAAGCAAGCATGCAGCATTCTTGTCTCAGACTAACAC  588

seq1  TGGGGATGCTAACCTCAGTCCTTTGAGAGAGCTAGAGTATTAATATCGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGCTAACCTCAGTCCTTTGAGAGAGCTAGAGTATTAATATCGGT  638

seq1  TTAGTGAGGCTAGATGAAGCCTTCAGGTTCCAACAGCAACACAGCTGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGGCTAGATGAAGCCTTCAGGTTCCAACAGCAACACAGCTGGCA  688

seq1  GCAACTGAGGAGAGAGATTCCCATTCCTTCAGTGAGAACCAACTAATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAGGAGAGAGATTCCCATTCCTTCAGTGAGAACCAACTAATCAA  738

seq1  GCAAAGCCAAGGAGAGGGAATGGTTAGTGTTATCTCTAAGTCTAATGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCAAGGAGAGGGAATGGTTAGTGTTATCTCTAAGTCTAATGCAA  788

seq1  CTGCTACCCTTTGCAATAAGAGGAAATAGGAAGGCTCGAAGCAGAAGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCCTTTGCAATAAGAGGAAATAGGAAGGCTCGAAGCAGAAGACC  838

seq1  TACTGAGCAGAGGAAGAAGCGATCATAAGGGGCCTGCAGGCCAAGGAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCAGAGGAAGAAGCGATCATAAGGGGCCTGCAGGCCAAGGAATG  888

seq1  CCAAGGGCTGCCAGCAGCCCAGAGCAAGGCTGGGCAGAGCACGGACTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCTGCCAGCAGCCCAGAGCAAGGCTGGGCAGAGCACGGACTGTC  938

seq1  TCTTGAATTCTCCAGAAGGAAGTGACCTGCCACACCCTAGCTTCCAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTCTCCAGAAGGAAGTGACCTGCCACACCCTAGCTTCCAGAAT  988

seq1  TTAGGATAATGCGTTCTCGGTTTTTAGTTTTGTTTTTATTTTGTTGTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATAATGCGTTCTCGGTTTTTAGTTTTGTTTTTATTTTGTTGTGTT  1038

seq1  TTTTTTTAATCAACTTTATAATATGTTGTAAAGCAGCCCAGACAACTACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATCAACTTTATAATATGTTGTAAAGCAGCCCAGACAACTACT  1088

seq1  TGATTTGAGCATACATGAATTC  1121
      ||||||||||||||||||||||
seq2  TGATTTGAGCATACATGAATTC  1110

seq1: chr3_107466803_107467890
seq2: B6Ng01-062B21.g_69_1148

seq1  GAATTCTCTTAGAGCATGAATCAGGATGTACTTTCTCCAAGTCCTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAGAGCATGAATCAGGATGTACTTTCTCCAAGTCCTCTTTA  50

seq1  AGATCTCAGTTTATAATTTTTATTTTCTATTTTTGTGGCAAGTGTCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAGTTTATAATTTTTATTTTCTATTTTTGTGGCAAGTGTCAATC  100

seq1  AAAAGTGGCACCATTTCTATAAAACTAACACCAGACAAGGTCTACAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGCACCATTTCTATAAAACTAACACCAGACAAGGTCTACAGTTC  150

seq1  TGAACAGATTATATAGTTATATTTGTTTCACCTTGGTCCAATTTATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGATTATATAGTTATATTTGTTTCACCTTGGTCCAATTTATCATT  200

seq1  CTTTCTTCCATCTATATAGACTTCCCTTCAAATAGTTTAGGTTGCAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCATCTATATAGACTTCCCTTCAAATAGTTTAGGTTGCAGAAG  250

seq1  CACAGATGCCCACAAGTTTGCTCTTAAAGGATAAACCCTAAAGATAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGCCCACAAGTTTGCTCTTAAAGGATAAACCCTAAAGATAGGGC  300

seq1  TCAGTGTTTTATACTGAGTAATGGCTCAAGAAATCAGCCGTCAGCATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTTATACTGAGTAATGGCTCAAGAAATCAGCCGTCAGCATAAG  350

seq1  CTGCGTGAGGCAGAGCTGAGAAATTTTGCTTATGGCTCCAGTTCACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGAGGCAGAGCTGAGAAATTTTGCTTATGGCTCCAGTTCACTGAT  400

seq1  GCTATAAACTATGAGCTGGAAACATCAGAGTCTGAGACTAGTATTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAACTATGAGCTGGAAACATCAGAGTCTGAGACTAGTATTTTTCT  450

seq1  AGCCTCAACTCTTCACTCTTTGCTTCAAAGGTTCAAACGAGATGTTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAACTCTTCACTCTTTGCTTCAAAGGTTCAAACGAGATGTTGGTA  500

seq1  ACTAACCACCTGAGCTGTTCCTCAGGGTTAACAATAATTTTTTTTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCACCTGAGCTGTTCCTCAGGGTTAACAATAATTTTTTTTCTTAA  550

seq1  TTAAAAGAAATAAAACAGAAATAAATGCTAAGGGACAAAATTCAACTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAATAAAACAGAAATAAATGCTAAGGGACAAAATTCAACTTGC  600

seq1  TAGAATGCAGTTTAGTTAAAACTAGAACAATGAGAGAGACTGGTGGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCAGTTTAGTTAAAACTAGAACAATGAGAGAGACTGGTGGAAGG  650

seq1  CTGGACTACAAACCCAAGTGAACCTACTGAGTTGAACAAGCAACGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTACAAACCCAAGTGAACCTACTGAGTTGAACAAGCAACGCATCT  700

seq1  CTGCCAGACATGCCACCTTACACAGGAAACAGGGCTTAGAGTGTCTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGACATGCCACCTTACACAGGAAACAGGGCTTAGAGTGTCTATGG  750

seq1  GAAGCTGACATGCACCACCTACATCTAACCTACCTGGCTGGGAAGTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGACATGCACCACCTACATCTAACCTACCTGGCTGGGAAGTACCA  800

seq1  TCCTGGCTCCTCTGAAGAAGTGAAAGAGCACTAGTTCCAGCAGCTAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTCCTCTGAAGAAGTGAAAGAGCACTAGTTCCAGCAGCTAGGAA  850

seq1  CAGGCTCTTTTAAGGCAATTTAGACACTGTAGATTGTTCCACATAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTTTTAAGGCAATTTAGACACTGTAGATTGTTCCACATAGAAGA  900

seq1  TGCCTTAGCATTTTCTGTTAATAAGGTAACTAAATACGATCAAAGTTCCC  950
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TG-CTTAGCATTTTCTGTTAATAAGGTAACTAAATACGATCAAAGTTCTC  949

seq1  AGAAATGGTTAAAGAATCAACTTTCTGGGCAGCAGAGTTAACCCCTTTTA  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGG-TAAAGAATCAACTTTCTGGGCAGCAGAGTTAACCCCTTTTA  998

seq1  GTGACTTGGGTGAGAAACCTTTGACCTCAGTTTCACCTAAAGAGCTATGG  1050
      |||||||||||||| ||||||||||||||| ||||||| ||||||||| |
seq2  GTGACTTGGGTGAG-AACCTTTGACCTCAG-TTCACCT-AAGAGCTAT-G  1044

seq1  AGCAAGTTCCTGTGTGGTCTGCAAAACTCAAATGATGA  1088
      |||||||||||||||||||||| |||||| ||||||||
seq2  AGCAAGTTCCTGTGTGGTCTGC-AAACTC-AATGATGA  1080