BAC Information

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BAC

Clone NameB6Ng01-062E17
Chromosome3 (Build37)6 (Build37)
Map Location 128,296,463 - 128,297,40718,835,832 - 18,835,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062E17.bB6Ng01-062E17.g
ACCDH882739DH882740
length990999
definitionDH882739|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E17, 5' end.DH882740|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,296,463 - 128,297,407)(18,835,832 - 18,835,968)
sequence
gaattccctataggactctcatgtatctacatatcctgctaatgacaggc
ctattgcaggcatactttcaagaatgtaaccatagtataaccctccagag
aaagggcatgttttctttctttctggcataataaatacaccatctcactg
tggggcaaacagcgggtatgcctactgctcacgttacaggagctttaggt
tatctttcctaatgattgctctcttttagtgcacatcaatgtgtgtgttt
ggtatttgcttgttgaactgaagctcaaggtactagacccagtgatcctc
tggtaattgctatgctgtgaataataaaccatcttttctcaaactcaaga
atcttatctccttccatcatctgtaaacagtgacagggtaacttctaatc
ttacagatagggtaaactttcaggcatttctgacacctgtattaacagac
agggatcattttaacaatggcaggaaaatcattaatggtatgaaacacaa
atgcacaagttaaaagtcttaataagcaagggagagaaagggacttagtc
aatctgatgtgcaatgtgttgagacatgtaggatcttaattgctgaaagt
taatgtctccctcaaattaaagcatgatgaaactatcacctgccatcaca
gttacagtcctaaatgtcacatctggttatgttatgcaaggaaaactgaa
tgtaaagcagtagtggtttgaaaggaaagaattgaaagtggtatgattcg
atgacaatgtgatggtgcattttaagaagagataaaaatgtttgagtcaa
gccgggcatggtggcgcactcatttcatcccagtactcgggaggcagagg
taggcagatttctgagttcgaggtcagcctagtctacagagtgagttcca
ggatagccagagctatacagagaaaccctgtcttgaaaacaaaacaaaca
aaacaaaagtttgagtcaatgaactaatattagaaattaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtcct
ctatctgatttaggataggtaaagatcctttcccaattgatgattgatgg
ggtggaacccagcccattggaaatggtttcagctctggtctggaggtcct
ggattctgtaagaaaataggctgaaaaagccatgtagaacaagccactaa
gcatcacattttcatggcctttgcatcagcccttgacttcagccctgccc
tgtttgagttcctgtcctgagttccttcaataataaggagcaatatgaac
atgtgagtccaataagtcctttcctctccaatttgcttttgggtcatgtt
gttgttgttgatgatgatgttgcagatatagaaaccctaataactcacct
aaagaaacttagaggagaaatctccacacagcacagaataatcaagatgt
caaaattaagtaaagaaacaattttaaaagctgtgaggagaaaacattaa
ctgatacccaaaggcataaacatcagaatgtcagttttgtctttagcaac
ccaaaaagccaggtagcctggaatggtataattcaagctccaaattaaat
aactgtctaccaacattcctgcactcagaaaagtaataccttgtctataa
tacatttttaatttataatattattatatcattgtcccctccctttcctc
cattcaacctttcccatgcacccccttgcctcttttcttcaactgttata
atttacatattttaaacttgtcattgcatatgtacaaatttatattccta
aatagaaaactaaatcctgctaattccagataatgttacctatatctata
ggatcccaggttaacacttagtattagataaaccattgtagggaggatcc
ccacatgcacccatatgcccatagttctttgtttagagctgagcccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128296463_128297407
seq2: B6Ng01-062E17.b_47_990

seq1  GAATTCCCTATAGGACTCTCATGTATCTACATATCCTGCTAATGACAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATAGGACTCTCATGTATCTACATATCCTGCTAATGACAGGC  50

seq1  CTATTGCAGGCATACTTTCAAGAATGTAACCATAGTATAACCCTCCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGGCATACTTTCAAGAATGTAACCATAGTATAACCCTCCAGAG  100

seq1  AAAGGGCATGTTTTCTTTCTTTCTGGCATAATAAATACACCATCTCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCATGTTTTCTTTCTTTCTGGCATAATAAATACACCATCTCACTG  150

seq1  TGGGGCAAACAGCGGGTATGCCTACTGCTCACGTTACAGGAGCTTTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAACAGCGGGTATGCCTACTGCTCACGTTACAGGAGCTTTAGGT  200

seq1  TATCTTTCCTAATGATTGCTCTCTTTTAGTGCACATCAATGTGTGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCTAATGATTGCTCTCTTTTAGTGCACATCAATGTGTGTGTTT  250

seq1  GGTATTTGCTTGTTGAACTGAAGCTCAAGGTACTAGACCCAGTGATCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGCTTGTTGAACTGAAGCTCAAGGTACTAGACCCAGTGATCCTC  300

seq1  TGGTAATTGCTATGCTGTGAATAATAAACCATCTTTTCTCAAACTCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTGCTATGCTGTGAATAATAAACCATCTTTTCTCAAACTCAAGA  350

seq1  ATCTTATCTCCTTCCATCATCTGTAAACAGTGACAGGGTAACTTCTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCTCCTTCCATCATCTGTAAACAGTGACAGGGTAACTTCTAATC  400

seq1  TTACAGATAGGGTAAACTTTCAGGCATTTCTGACACCTGTATTAACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATAGGGTAAACTTTCAGGCATTTCTGACACCTGTATTAACAGAC  450

seq1  AGGGATCATTTTAACAATGGCAGGAAAATCATTAATGGTATGAAACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCATTTTAACAATGGCAGGAAAATCATTAATGGTATGAAACACAA  500

seq1  ATGCACAAGTTAAAAGTCTTAATAAGCAAGGGAGAGAAAGGGACTTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAGTTAAAAGTCTTAATAAGCAAGGGAGAGAAAGGGACTTAGTC  550

seq1  AATCTGATGTGCAATGTGTTGAGACATGTAGGATCTTAATTGCTGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATGTGCAATGTGTTGAGACATGTAGGATCTTAATTGCTGAAAGT  600

seq1  TAATGTCTCCCTCAAATTAAAGCATGATGAAACTATCACCTGCCATCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTCCCTCAAATTAAAGCATGATGAAACTATCACCTGCCATCACA  650

seq1  GTTACAGTCCTAAATGTCACATCTGGTTATGTTATGCAAGGAAAACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTCCTAAATGTCACATCTGGTTATGTTATGCAAGGAAAACTGAA  700

seq1  TGTAAAGCAGTAGTGGTTTGAAAGGAAAGAATTGAAAGTGGTATGATTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGCAGTAGTGGTTTGAAAGGAAAGAATTGAAAGTGGTATGATTCG  750

seq1  ATGACAATGTGATGGTGCATTTTAAGAAGAGATAAAAATGTTTGAGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGTGATGGTGCATTTTAAGAAGAGATAAAAATGTTTGAGTCAA  800

seq1  GCCGGGCATGGTGGCGCACTCATTTCATCCCAGTACTCGGGAGGCAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCATGGTGGCGCACTCATTTCATCCCAGTACTCGGGAGGCAGAGG  850

seq1  TAGGCAGATTTCTGAGTTCGAGGTCAGCCTAGTCTACAGAGTGAGTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGATTTCTGAGTTCGAGGTCAGCCTAGTCTACAGAGTGAGTTCCA  900

seq1  GGATAGCCAGAGCTATACAGAGAAACCCTGTCTTGAAAAACAAAA  945
      ||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATAGCCAGAGCTATACAGAGAAACCCTGTCTTG-AAAACAAAA  944

seq1: chr6_18835832_18835968
seq2: B6Ng01-062E17.g_68_204 (reverse)

seq1  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCC  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGAGGACTAATATCC  50

seq1  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCC  100

seq1  CATTAATAAATGGGGCTCAGAACTGAACAAAGAATTC  137
      |||||| ||||||||||||||||||||||||||||||
seq2  CATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  137