BAC Information

Click to search

BAC

Clone NameB6Ng01-062N19
Chromosome3 (Build37)
Map Location 87,307,918 - 87,446,285
singlet/doubletdoublet
Overlap geneEtv3, EG546801, Arhgef11
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5
Downstream geneEG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N19.bB6Ng01-062N19.g
ACCDH883125DH883126
length9651,063
definitionDH883125|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N19, 5' end.DH883126|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,445,556 - 87,446,285)(87,307,918 - 87,309,002)
sequence
gaattcctggagctggagttaatgtgggtgctgggaactgaacttaagcc
ctctggaagagcaagatacactcttacttaactcctgagccatctgtcta
gcccaataacaaggctgctaagacaattcggtgtcctcgccaaatagtga
gagaacaaccagatatgcatatataaaggtatgagttctacctcctcctg
tgtacaaaactcactccacataatccacagactataaatgcttgtcctgg
ctactttcttcttcttcttcttttttttttttaaatttaatctttgaaga
aggaacttaatcaagtgtgcctccatcacactggcctacaggtaagtttg
agggacgttttcttgatcaatgactgatgtgagagggcccaacccactgt
gggtggtattactgtgggcaggaggccctgtggtacagaagaaagcaggc
tcaacaagccacgaggaacaagccagagagcagtgttcctcgacagtttg
tgcttcagctcccactgactttcctcagtgaaggactgttttctggaagt
gtaaggtgaaataaactcttcctccccaaatttcttttagtcatggactt
tattacaacaatggaaacaaaactagaagagagctagaactacaaaactt
gtagaaaaaatgctgcaagttgggcaatggctttggatctgacatcaaaa
gcacagcaacatcactaactcttagaactcaacaataaaaggataaacaa
ttcaaataaaacatgggcgagagctaagtattgatacatgctggaatccc
agcatcccggaggcagaggctgaagaatcactctaagtttgagaccagct
tggtcaaagccagctaggtactcacaggaagatttggtctcaaataaaaa
caaaagcaaatgatttgaataaaaaaaatgtacagagggccaataagcac
atgaaaagatactca
gaattcatggagctgagacaggagtctgatagtcaccaagaaaaggggaa
agtcagcttagagaggaggtgcttttgaagtgtctcaatcgagaacacac
agtaccaaccacagctactgagagctttcgactgctccttgactgagaac
agcctcagaccctccccaaacacaggtccccttgacactgaacaccagaa
gggcagcccctgactttgtaactgtagcacagggtcagaatggcctgtac
aagaggaagcactatggtaaagaagccagggctctttgtacaagtactga
gagcttgcctgagacgggaagaagttccctgagaggataaaggatgaaga
ggagcccatgggccaactctgcctccaagaacagaagaaagtatggctta
tcattcagggatctgcctccccttccctgcttctcagggtctgacctgta
gtactcttgtcttccctgagatcactctggaagagatcgggagacactgt
cagcccctgccaagctatctctgccaggacctgggtacagtcgccatctg
gtggttgataagcaaattaccagtagtgattcaataaaaggagctggtca
ccactggacaaacctataacaagtgtctgctttgtgccagcctctctggg
cacaatgacagaagcaagatcgcttcattaggaagccttcaagccagcga
gaggcggaagcagaagcccgttcccggcaggctgtgagctcccgtgtaaa
ggtccctggaggcatcactcacagggagacagagcagccagaccatgtga
ttctgaaatgatacaggaaagtatcctaaggtagcaggtgacttcgaaga
gcagtgcagcccacactgtgagggaagagtgtaaatgtagccttgaggca
gatctctgctcctgattaggccagtagccagagactgaagagctgactca
ttcgggtggtcagagctctgaggctgagcagattgctgagcacagtctta
aaagaaacaggaacggcaaacagccttcagatagctgtagaataagaaag
atgcctctaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87445556_87446285
seq2: B6Ng01-062N19.b_48_777 (reverse)

seq1  GAGTTCTAAGAGTTAGTGATGTTGCTGTGCTTTTGATGTCAGATCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAAGAGTTAGTGATGTTGCTGTGCTTTTGATGTCAGATCCAAAG  50

seq1  CCATTGCCCAACTTGCAGCATTTTTTCTACAAGTTTTGTAGTTCTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCCAACTTGCAGCATTTTTTCTACAAGTTTTGTAGTTCTAGCTC  100

seq1  TCTTCTAGTTTTGTTTCCATTGTTGTAATAAAGTCCATGACTAAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGTTTTGTTTCCATTGTTGTAATAAAGTCCATGACTAAAAGAAA  150

seq1  TTTGGGGAGGAAGAGTTTATTTCACCTTACACTTCCAGAAAACAGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAGGAAGAGTTTATTTCACCTTACACTTCCAGAAAACAGTCCTT  200

seq1  CACTGAGGAAAGTCAGTGGGAGCTGAAGCACAAACTGTCGAGGAACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGAAAGTCAGTGGGAGCTGAAGCACAAACTGTCGAGGAACACTG  250

seq1  CTCTCTGGCTTGTTCCTCGTGGCTTGTTGAGCCTGCTTTCTTCTGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGCTTGTTCCTCGTGGCTTGTTGAGCCTGCTTTCTTCTGTACCA  300

seq1  CAGGGCCTCCTGCCCACAGTAATACCACCCACAGTGGGTTGGGCCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTCCTGCCCACAGTAATACCACCCACAGTGGGTTGGGCCCTCTC  350

seq1  ACATCAGTCATTGATCAAGAAAACGTCCCTCAAACTTACCTGTAGGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCATTGATCAAGAAAACGTCCCTCAAACTTACCTGTAGGCCAG  400

seq1  TGTGATGGAGGCACACTTGATTAAGTTCCTTCTTCAAAGATTAAATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAGGCACACTTGATTAAGTTCCTTCTTCAAAGATTAAATTTAA  450

seq1  AAAAAAAAAAGAAGAAGAAGAAGAAAGTAGCCAGGACAAGCATTTATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAGAAGAAGAAGAAAGTAGCCAGGACAAGCATTTATAGT  500

seq1  CTGTGGATTATGTGGAGTGAGTTTTGTACACAGGAGGAGGTAGAACTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATTATGTGGAGTGAGTTTTGTACACAGGAGGAGGTAGAACTCAT  550

seq1  ACCTTTATATATGCATATCTGGTTGTTCTCTCACTATTTGGCGAGGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATATATGCATATCTGGTTGTTCTCTCACTATTTGGCGAGGACAC  600

seq1  CGAATTGTCTTAGCAGCCTTGTTATTGGGCTAGACAGATGGCTCAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGTCTTAGCAGCCTTGTTATTGGGCTAGACAGATGGCTCAGGAGT  650

seq1  TAAGTAAGAGTGTATCTTGCTCTTCCAGAGGGCTTAAGTTCAGTTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGAGTGTATCTTGCTCTTCCAGAGGGCTTAAGTTCAGTTCCCAG  700

seq1  CACCCACATTAACTCCAGCTCCAGGAATTC  730
      ||||||||||||||||||||||||||||||
seq2  CACCCACATTAACTCCAGCTCCAGGAATTC  730

seq1: chr3_87307918_87309002
seq2: B6Ng01-062N19.g_69_1131

seq1  GAATTCATGGAGCTGAGACAGGAGTCTGATAGTCACCAAGAAAAGGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAGCTGAGACAGGAGTCTGATAGTCACCAAGAAAAGGGGAA  50

seq1  AGTCAGCTTAGAGAGGAGGTGCTTTTGAAGTGTCTCAATCGAGAACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTTAGAGAGGAGGTGCTTTTGAAGTGTCTCAATCGAGAACACAC  100

seq1  AGTACCAACCACAGCTACTGAGAGCTTTCGACTGCTCCTTGACTGAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAACCACAGCTACTGAGAGCTTTCGACTGCTCCTTGACTGAGAAC  150

seq1  AGCCTCAGACCCTCCCCAAACACAGGTCCCCTTGACACTGAACACCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGACCCTCCCCAAACACAGGTCCCCTTGACACTGAACACCAGAA  200

seq1  GGGCAGCCCCTGACTTTGTAACTGTAGCACAGGGTCAGAATGGCCTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCCCTGACTTTGTAACTGTAGCACAGGGTCAGAATGGCCTGTAC  250

seq1  AAGAGGAAGCACTATGGTAAAGAAGCCAGGGCTCTTTGTACAAGTACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGCACTATGGTAAAGAAGCCAGGGCTCTTTGTACAAGTACTGA  300

seq1  GAGCTTGCCTGAGACGGGAAGAAGTTCCCTGAGAGGATAAAGGATGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCCTGAGACGGGAAGAAGTTCCCTGAGAGGATAAAGGATGAAGA  350

seq1  GGAGCCCATGGGCCAACTCTGCCTCCAAGAACAGAAGAAAGTATGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCATGGGCCAACTCTGCCTCCAAGAACAGAAGAAAGTATGGCTTA  400

seq1  TCATTCAGGGATCTGCCTCCCCTTCCCTGCTTCTCAGGGTCTGACCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGGGATCTGCCTCCCCTTCCCTGCTTCTCAGGGTCTGACCTGTA  450

seq1  GTACTCTTGTCTTCCCTGAGATCACTCTGGAAGAGATCGGGAGACACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTGTCTTCCCTGAGATCACTCTGGAAGAGATCGGGAGACACTGT  500

seq1  CAGCCCCTGCCAAGCTATCTCTGCCAGGACCTGGGTACAGTCGCCATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGCCAAGCTATCTCTGCCAGGACCTGGGTACAGTCGCCATCTG  550

seq1  GTGGTTGATAAGCAAATTACCAGTAGTGATTCAATAAAAGGAGCTGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGATAAGCAAATTACCAGTAGTGATTCAATAAAAGGAGCTGGTCA  600

seq1  CCACTGGACAAACCTATAACAAGTGTCTGCTTTGTGCCAGCCTCTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGACAAACCTATAACAAGTGTCTGCTTTGTGCCAGCCTCTCTGGG  650

seq1  CACAATGACAGAAGCAAGATCGCTTCATTAGGAAGCCTTCAAGCCAGCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACAGAAGCAAGATCGCTTCATTAGGAAGCCTTCAAGCCAGCGA  700

seq1  GAGGCGGAAGCAGAAGCCCGTTCCCGGCAGGCTGTGAGCTCCCGTGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGAAGCAGAAGCCCGTTCCCGGCAGGCTGTGAGCTCCCGTGTAAA  750

seq1  GGTCCCTGGAGGCATCACTCACAGGGAGACAGAGCAGGCCAGACCATGTG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTCCCTGGAGGCATCACTCACAGGGAGACAGAGCA-GCCAGACCATGTG  799

seq1  ATTCTGAAATGATACAGGAAAGTATCCTAAGGTAGCAGGTGACTTCGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAATGATACAGGAAAGTATCCTAAGGTAGCAGGTGACTTCGAAG  849

seq1  AGCAGGTGCAGCCCACACTGTGAGGGAAGAGTGTAAATGTAGCCTTGAGG  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCA-GTGCAGCCCACACTGTGAGGGAAGAGTGTAAATGTAGCCTTGAGG  898

seq1  CCAGATCTCTGCTCCTGATTAGGCCAGGTAGCCAGAGACTGAAGGAGCTG  950
       ||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  -CAGATCTCTGCTCCTGATTAGGCCA-GTAGCCAGAGACTGAA-GAGCTG  945

seq1  ACCTCATTCGGGTGGGTCAAGAGCTCCTGAGGGCTGAGGCAGATTGGCTG  1000
      | ||||||||||| |||| |||||| |||| |||||| ||||||| ||||
seq2  A-CTCATTCGGGT-GGTC-AGAGCT-CTGA-GGCTGA-GCAGATT-GCTG  988

seq1  AGGCAACAGTCTTAAAAGGAAACAGAAACGGCAAAACAGCTCTTCCAGAT  1050
      ||   |||||||||||| ||||||| |||||| ||||||| ||| |||||
seq2  AG--CACAGTCTTAAAA-GAAACAGGAACGGC-AAACAGC-CTT-CAGAT  1032

seq1  AAGCTGTAGAATTAAGAAAGATGGCCTCTAGAGAC  1085
       |||||||||| |||||||||| ||||||| ||||
seq2  -AGCTGTAGAA-TAAGAAAGAT-GCCTCTA-AGAC  1063