BAC Information

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BAC

Clone NameB6Ng01-062O18
Chromosome3 (Build37)
Map Location 131,533,590 - 131,668,086
singlet/doubletdoublet
Overlap geneOlfr375-ps1
Upstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O18.bB6Ng01-062O18.g
ACCDH883169DH883170
length1,1211,117
definitionDH883169|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O18, 5' end.DH883170|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,666,954 - 131,668,086)(131,533,590 - 131,534,741)
sequence
gaattctctctggcaagttatagtctgagaaaaaaacaagaccattgttt
tatataatatggagtaacttaaagcagggcttcacctgatctctacaata
ttcaccatgccgtcatgtacatgggcttgaccagggccaagaagcgggag
tgggtaggtaggggagcagggcggagggaaggtatagggaactttcagga
tagcatttgaaatgtatgtaaagaaaatatctaataataaataaataaat
aaataaataaacaaataaataaatagacagtcacattgatttaattctcc
catatttacataattctccaaagacctttgtggaaaggaaaagacatatc
atgttaagtagtaaaaagcatcagaaatattgctattcaaaataataaac
tctcttacacttgaaaaaaataaagtatgtcttattcacagaaattttat
catcttatcaatctgtgatattctactatagttttttatttaatataatc
aagttcataaattcccttaactcatcaataggtgcaaatttagtgcattc
aggacaaaaggagtcctgccccataattaccaagttaaaaataattaagt
aggctgatgaaaagcatttgcacccaatgctgctcatgtctaagagtttc
ccaagaaatacagttgtgtttctcctttctcccttaatagtttacttttg
tcagaccaacaggaagtctctgatccatcgagcaatttcatggttgttct
ctgaggccagcaaacttcagttcctgatacctaggtttcttgacacctgg
aagttcaatgaggcctaagattactaaaagagtgaatgccttccggctct
gcctcgggcctctggaatttatataattcttgatcaaggtctcaccctag
tgtttcaacagccttgcagttgttattcacctcctaaactgggagatctt
gtgactacaaggagcaggtttctgtttatttccagtttgtggaaagaaca
tcaagaacattctaagaaatggaggcaacccagaaaaagattctatggag
tctcgatctgccattacagagtcaaaggaggtttgagctcatggctacct
gcctttttaggatatatttgc
gaattctcctgccccgtcctccatcactgtcaagctgagagactctttct
ctttgattttatatattcacacacatgcactcgcgtgcacacacacatac
attcacaaacatgaatgtatgtatacacacacacacacacacacatatat
gtataaaacccgctgagtctgtttttattgttattatgtgtatggcttca
ggatgactctaattggacagccaatcagggtgctcatcacggggagaggg
tacttgtcattattccttaagtcataagctgcagttagttcttatctatg
ggcaggattctgtaaatttctttccagtctttttatgaaaatatttctag
gagagaccgtgtttaacagacttattggtattctggctctcaaagtattt
ctgcctgctcttctataatgatccctgagcccatggctgtaatgcagggg
atgtgatgtaggcatctccattggggcggagctcctcatgatctgttgat
ctctgcattgtgtctacttgtgtgtggcttctgtgatggtctccatttgt
tgtgaggaaaggcttctctgacgaggggtggtagttacactttcctgtgg
gtttaaggataagatttagaatgtagtaaggaattatgctggtctgtcta
aaatggcggtagtagatttcttggttaaggtccatgatcttgatgtcccc
aagaagctggctaggtttctagtactgggtatgatttctcttctgttgag
tgggccttaagtccaattagagagctattgattgataccacttattacag
ctcctcgtgtctcttgccatgctggtactagctaaggttcgcaggtatca
cagctgtgtggggctgtttgttttcctccttagcagcttacatagacttt
tctggaactggatcacaagaagaggctttcagcacagatcagatactcac
acacacacttttgtgtaatttaggtaatttgaataacctccccccatttc
ccagttggagcatctccagtacttgtttcctgctttatcactgaatctgc
tattccctcccagaactttcatggtctattgatttctggttcttgtactt
tttatctgaggtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131666954_131668086
seq2: B6Ng01-062O18.b_46_1166 (reverse)

seq1  GCAAATATTACATTAAAAGGCAGGTTAGCCACGAGCACCAAAACTCACGT  50
      ||||||||  | | |||||||||| |||||| |||| |  |||| | | |
seq2  GCAAATATATCCTAAAAAGGCAGG-TAGCCATGAGCTC--AAAC-CTCCT  46

seq1  TTGACTCTGTAATGGCAGAATTCGAGACATCATTGACTTCTTTTTCTGGG  100
      |||||||||||||||||||  |||||||  ||| ||  ||||||||||||
seq2  TTGACTCTGTAATGGCAGA--TCGAGACTCCATAGA-ATCTTTTTCTGGG  93

seq1  TTTGCTTCCATTCTCTAGAATGGTCTTGATGTACCTTCCACAAACTTGTG  150
       |||| ||||||   ||||||| ||||||||| | |||||||||| ||  
seq2  -TTGCCTCCATTTCTTAGAATGTTCTTGATGTTCTTTCCACAAAC-TGGA  141

seq1  AATAAACAGATACCTGCTCCTTGTAGTCACACGATCTCCCAGTTTAGGAG  200
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  AATAAACAGAAACCTGCTCCTTGTAGTCACAAGATCTCCCAGTTTAGGAG  191

seq1  GTGAATAACCAACTGCAAGGCTGTTGAAACACTAGGGTGAGACCCTGAAT  250
      |||||||| ||||||||||||||||||||||||||||||||||| || ||
seq2  GTGAATAA-CAACTGCAAGGCTGTTGAAACACTAGGGTGAGACCTTG-AT  239

seq1  CAAGAATTATATAAATTCCAGAGGCCCGAGGCAGAGCCTGGAAGGCATTC  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAGAATTATATAAATTCCAGAGGCCCGAGGCAGAGCC-GGAAGGCATTC  288

seq1  ACTCTTTTAGTAATCCTAGGCCTCATTGAACTTCCAGGTGTCAAGAAACC  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTAGTAATCTTAGGCCTCATTGAACTTCCAGGTGTCAAGAAACC  338

seq1  TAGGTATCAGGAACTGAAGTTTGCTGGCCTCAGAGAACAACCATGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATCAGGAACTGAAGTTTGCTGGCCTCAGAGAACAACCATGAAATT  388

seq1  GCTCGATGGATCAGAGACTTCCTGTTGGTCTGACAAAAGTAAACTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGATGGATCAGAGACTTCCTGTTGGTCTGACAAAAGTAAACTATTAA  438

seq1  GGGAGAAAGGAGAAACACAACTGTATTTCTTGGGAAACTCTTAGACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGGAGAAACACAACTGTATTTCTTGGGAAACTCTTAGACATGA  488

seq1  GCAGCATTGGGTGCAAATGCTTTTCATCAGCCTACTTAATTATTTTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTGGGTGCAAATGCTTTTCATCAGCCTACTTAATTATTTTTAAC  538

seq1  TTGGTAATTATGGGGCAGGACTCCTTTTGTCCTGAATGCACTAAATTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTATGGGGCAGGACTCCTTTTGTCCTGAATGCACTAAATTTGC  588

seq1  ACCTATTGATGAGTTAAGGGAATTTATGAACTTGATTATATTAAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGATGAGTTAAGGGAATTTATGAACTTGATTATATTAAATAAAA  638

seq1  AACTATAGTAGAATATCACAGATTGATAAGATGATAAAATTTCTGTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGTAGAATATCACAGATTGATAAGATGATAAAATTTCTGTGAAT  688

seq1  AAGACATACTTTATTTTTTTCAAGTGTAAGAGAGTTTATTATTTTGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATACTTTATTTTTTTCAAGTGTAAGAGAGTTTATTATTTTGAATA  738

seq1  GCAATATTTCTGATGCTTTTTACTACTTAACATGATATGTCTTTTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTTCTGATGCTTTTTACTACTTAACATGATATGTCTTTTCCTTT  788

seq1  CCACAAAGGTCTTTGGAGAATTATGTAAATATGGGAGAATTAAATCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGTCTTTGGAGAATTATGTAAATATGGGAGAATTAAATCAATG  838

seq1  TGACTGTCTATTTATTTATTTGTTTATTTATTTATTTATTTATTTATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCTATTTATTTATTTGTTTATTTATTTATTTATTTATTTATTAT  888

seq1  TAGATATTTTCTTTACATACATTTCAAATGCTATCCTGAAAGTTCCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTTCTTTACATACATTTCAAATGCTATCCTGAAAGTTCCCTAT  938

seq1  ACCTTCCCTCCGCCCTGCTCCCCTACCTACCCACTCCCGCTTCTTGGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTCCGCCCTGCTCCCCTACCTACCCACTCCCGCTTCTTGGCCC  988

seq1  TGGTCAAGCCCATGTACATGACGGCATGGTGAATATTGTAGAGATCAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGCCCATGTACATGACGGCATGGTGAATATTGTAGAGATCAGGT  1038

seq1  GAAGCCCTGCTTTAAGTTACTCCATATTATATAAAACAATGGTCTTGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGCTTTAAGTTACTCCATATTATATAAAACAATGGTCTTGTTT  1088

seq1  TTTTCTCAGACTATAACTTGCCAGAGAGAATTC  1133
      |||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGACTATAACTTGCCAGAGAGAATTC  1121

seq1: chr3_131533590_131534741
seq2: B6Ng01-062O18.g_70_1186

seq1  GAATTCTCCTGCCCCGTCCTCCATCACTGTCAAGCTGAGAGACTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCCCCGTCCTCCATCACTGTCAAGCTGAGAGACTCTTTCT  50

seq1  CTTTGATTTTATATATTCACACACATGCACTCGCGTGCACACACACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTTTATATATTCACACACATGCACTCGCGTGCACACACACATAC  100

seq1  ATTCACAAACATGAATGTATGTATACACACACACACACACACACATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAACATGAATGTATGTATACACACACACACACACACACATATAT  150

seq1  GTATAAAACCCGCTGAGTCTGTTTTTATTGTTATTATGTGTATGGCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACCCGCTGAGTCTGTTTTTATTGTTATTATGTGTATGGCTTCA  200

seq1  GGATGACTCTAATTGGACAGCCAATCAGGGTGCTCATCACGGGGAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTCTAATTGGACAGCCAATCAGGGTGCTCATCACGGGGAGAGGG  250

seq1  TACTTGTCATTATTCCTTAAGTCATAAGCTGCAGTTAGTTCTTATCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCATTATTCCTTAAGTCATAAGCTGCAGTTAGTTCTTATCTATG  300

seq1  GGCAGGATTCTGTAAATTTCTTTCCAGTCTTTTTATGAAAATATTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATTCTGTAAATTTCTTTCCAGTCTTTTTATGAAAATATTTCTAG  350

seq1  GAGAGACCGTGTTTAACAGACTTATTGGTATTCTGGCTCTCAAAGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCGTGTTTAACAGACTTATTGGTATTCTGGCTCTCAAAGTATTT  400

seq1  CTGCCTGCTCTTCTATAATGATCCCTGAGCCCATGGCTGTAATGCAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCTCTTCTATAATGATCCCTGAGCCCATGGCTGTAATGCAGGGG  450

seq1  ATGTGATGTAGGCATCTCCATTGGGGCGGAGCTCCTCATGATCTGTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGTAGGCATCTCCATTGGGGCGGAGCTCCTCATGATCTGTTGAT  500

seq1  CTCTGCATTGTGTCTACTTGTGTGTGGCTTCTGTGATGGTCTCCATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATTGTGTCTACTTGTGTGTGGCTTCTGTGATGGTCTCCATTTGT  550

seq1  TGTGAGGAAAGGCTTCTCTGACGAGGGGTGGTAGTTACACTTTCCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAAAGGCTTCTCTGACGAGGGGTGGTAGTTACACTTTCCTGTGG  600

seq1  GTTTAAGGATAAGATTTAGAATGTAGTAAGGAATTATGCTGGTCTGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGATAAGATTTAGAATGTAGTAAGGAATTATGCTGGTCTGTCTA  650

seq1  AAATGGCGGTAGTAGATTTCTTGGTTAAGGTCCATGATCTTGATGTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCGGTAGTAGATTTCTTGGTTAAGGTCCATGATCTTGATGTCCCC  700

seq1  AAGAAGCTGGCTAGGTTTCTAGTACTGGGTATGATTTCCCTTCTGTTGAG  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAAGCTGGCTAGGTTTCTAGTACTGGGTATGATTTCTCTTCTGTTGAG  750

seq1  TGGGCCTTAAGTCCAATTAGAGAGCTATTGATTGATACCACTTATTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTAAGTCCAATTAGAGAGCTATTGATTGATACCACTTATTACAG  800

seq1  CTCCTCGTGTCTCTTGCCATGCTGGTACTAGCTAAGGTTCGCAGGTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCGTGTCTCTTGCCATGCTGGTACTAGCTAAGGTTCGCAGGTATCA  850

seq1  CAGCTGTGTGGGGCTGTTTGTTTTCCTCCTTTAGCAGCTTACATAGACTT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGCTGTGTGGGGCTGTTTGTTTTCCTCC-TTAGCAGCTTACATAGACTT  899

seq1  TTCTGGAAACTGGATCACAAGAAAGAGGCTTTCAGCACAGATCAGATACT  950
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTGG-AACTGGATCACAAG-AAGAGGCTTTCAGCACAGATCAGATACT  947

seq1  CACACACACACTTTTTGGTGTAATTTTAGGTAAATTTGAAATAACCTCCC  1000
      |||||||||||||||  |||||| ||||||| |||||| |||||||||||
seq2  CACACACACACTTTT--GTGTAA-TTTAGGT-AATTTG-AATAACCTCCC  992

seq1  CCCATTTCCCCAGTTGGAGCCATCTCCCAGTTACTTTGTTTCCTGCTTTT  1050
      ||||||| ||||||||||| ||||| |||| ||| |||||||||||  ||
seq2  CCCATTT-CCCAGTTGGAG-CATCT-CCAG-TAC-TTGTTTCCTGC--TT  1035

seq1  TATCACCTGTATCCTGCTATTCCCCTCCCAAGAACTTTCCCATGGTCTAT  1100
      ||||| ||| || |||||||| ||||||| ||||||||  ||||||||||
seq2  TATCA-CTGAAT-CTGCTATT-CCCTCCC-AGAACTTT--CATGGTCTAT  1079

seq1  TTGTATTTTCCTGGTTTCAGTGGTTACTCCATATTATATACTGAGGTGTG  1150
      |   ||||  ||||||   |    ||||     || ||| ||||||||||
seq2  T--GATTT--CTGGTTCTTG----TACT-----TTTTAT-CTGAGGTGTG  1115

seq1  AG  1152
      ||
seq2  AG  1117