BAC Information

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BAC

Clone NameB6Ng01-062P15
Chromosome3 (Build37)
Map Location 41,059,191 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062P15.bB6Ng01-062P15.g
ACCDH883211DH883212
length9721,146
definitionDH883211|Mus musculus domesticus DNA, BAC clone: B6Ng01-062P15, 5' end.DH883212|Mus musculus domesticus DNA, BAC clone: B6Ng01-062P15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattgtttgtttagggctgagccccattttttgatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttagggtaggtaaagatcctttcccaatctgttggtggcct
ttttggcctattgacggtgtcttttgctttgcagaagctttgcagttccc
attcgtcaactctagatcttacagcacaagccattactgttctatttagg
aatttttcccctgtgcccatatcttggagggttttccctactttctcctc
aataagtttcagtgtctctggttttatgtggagttccttaacccacttag
atttgacgttagtacaaggagattggaatggattcgcattcttctacatg
ataactgccagttgtgccagcaccacttgttgaagatgctgtcttttttc
cactggatattttttgctcccttgtcaaagatcaagtgaccagaggtgtg
tgggttcatttctgggtcttcaattctattccattggtctacttgtctgt
tgttataccagtaccatgcagtttttatcacaattgctctgtagtacagc
tttaggtcaggcatggtgattccaccagaggttcttttatccttgagaag
actttttgctatcctaggttttttgttattccagatgaatctgccgattg
ccctttctaattcgttgaagaattgaattggaattttgatggggattgca
ttgaatctgtagattgcttttggcaagatagccatttttacaatgttgat
cctgccaatccatgagcaggggagatctttccatcttctgagatcttctt
taatttctttcttcagagacttgaagtttttattatacagatctttcact
tccttagttagagtcacgccaaggtattttatattatttgtgactattga
gaaggtgttgtttccctaattt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacccttagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcttca
gaaaactggacatagtactaccggaggatccagcaatacctttcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
aagcactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagcctgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatgg
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctccatg
gagagctagagaagtacccaggagctaaagggatctgcaccctatagtga
acaacatatgactacagtaccaggagctctgtctctagctgcatatgtat
caagatgctagtcgcatcactgacgagaggtcaatgactgcaactaatgc
tcaatcaggtacgctaagtaaaggggagtagtagtggatggtgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059191_41059737
seq2: B6Ng01-062P15.b_46_580 (reverse)

seq1  CAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCA  50
      ||||||||||||||||||||| |||||| ||| |||||||||| ||||||
seq2  CAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTCTGGTCA  50

seq1  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  100
      ||||||||| ||||||||||| ||||  ||||||||||||||||||||||
seq2  CTTGATCTTTGACAAGGGAGCAAAAAATATCCAGTGGAAAAAAGACAGCA  100

seq1  TTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  150
      | |||||||| ||||||||||||||||||  |||||||||||||||||||
seq2  TCTTCAACAAGTGGTGCTGGCACAACTGGCAGTTATCATGTAGAAGAATG  150

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  200
      |||    ||||| ||| ||||||||||||||| ||||||||||||||| |
seq2  CGA----ATCCATTCCAATCTCCTTGTACTAACGTCAAATCTAAGTGGGT  196

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  250
       ||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATTGAGGAGAAAG  246

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  300
      | ||||||| |||  ||||||||| ||||||||||||||||||  |||||
seq2  TAGGGAAAACCCTCCAAGATATGGGCACAGGGGAAAAATTCCTAAATAGA  296

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  350
      |||| ||||||||||||||||||||  ||| | ||| ||||||       
seq2  ACAGTAATGGCTTGTGCTGTAAGATCTAGAGTTGACGAATGGG-------  339

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  400
        ||||||||||||||||||| ||||||||||||||||||| | ||||||
seq2  --AACTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAGGCCAAAAA  387

seq1  GG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  449
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCCACCAACAGATTGGGAAAGGATCTTTACCTACCCTAAATCAGATAGG  437

seq1  GGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAA  499
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAA  487

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  547
      ||||||||||||||| ||||||||||||||||  ||||||||| ||||
seq2  ATCAAATAACCCCATCAAAAAATGGGGCTCAGCCCTAAACAAACAATT  535