BAC Information

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BAC

Clone NameB6Ng01-063G12
Chromosome3 (Build37)
Map Location 120,940,846 - 121,071,019
singlet/doubletdoublet
Overlap geneTmem56, LOC668778, LOC668780, Alg14
Upstream gene2510027J23Rik, LOC435752
Downstream genePpia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063G12.bB6Ng01-063G12.g
ACCDH883515DH883516
length1,1581,093
definitionDH883515|Mus musculus domesticus DNA, BAC clone: B6Ng01-063G12, 5' end.DH883516|Mus musculus domesticus DNA, BAC clone: B6Ng01-063G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,069,856 - 121,071,019)(120,940,846 - 120,941,838)
sequence
gaattcactttgtagaccaggctggcttcgaactcagaaatccacctgcc
gctgcctcccaagtgctgggattaaaggtgtgtgtcgtcaatgctcttaa
ccgctgagccatctcaccaacccttccacatttttattattatattcctc
ctcctcctcctcttcctccttcttctcctcctcttcttcttcttccttct
ccttattattattagagtttccagatcccattatacatgatgacatcatg
gctgttaatcgaatatatccttgcagggtaaatactgataaatgaggctc
acaagtagaatctcactgggaactttgagaatgctaaatgtatagtaagt
aagactaaaaagctccagaatgaaccatcaccggagcaggcctggaccaa
gtctggatgtatatgaacttatgtgtttaattaatgtcagtattttgttc
agaatcatagtgtgagtattgtcaactgcagaacaaggggaccacattag
gatgttatgctgtctctgaagcaagcaaacaaacaaacgaaaaccctatg
aatgaagttagtaatgtgatccttccacagaagtttttgagcacatggcc
tagccaaaaggtaggaaactccatggtaaccttgcttgcaaatggccgtg
tcacagagttctctggagaagcaacccaaactgcgctctaggagaccagg
aagactatggaggtgaaatttaagtttgaaagagaagacagtgtgatggg
tattattggttgtcaactttgactacatctggaatgaactacaatccaga
aatggaggacactcctgtgacccagatctttgtgatgacacatgcccttt
agttccagatcttcaggtggggaagacacacctttaatctggggccccac
ctctggctgggagccttttaaagacatggaagaaggaagcttttggtttc
tctttgcctgcttggccctcacctgctaaaacatccattccttcactggg
atttggggcttgcttctttgggatctatcctatacaggagacagctgaaa
cacctagccttgtggactgaacaactactaaattcttgggcttcccagtc
aagctgcccatgtgatatttggactgcagcctgaagtatccaataacctt
gccacccc
gaattcacacagacagacagacagacagacagacagacacggccagcctg
gtctacgggggaaaaatgtctaaaaagaaaaaagaagggggctggtgaga
tggctcagtggttaagagcaccgactgctcttccaaaggtcctgagttca
aatcccagcaaccacatggtggctcacaaccatctttaatgagatctgac
tccttcttctggagtagtctgaagacagcaacagtgtacttacatataat
aataaataaataaatcttaaaaaaaagaaaaaagaagaaaaagttaaaaa
aaaaaaaagaaaagaaaaaataaagacagtatcatatgggcccaaaaggt
gactcagtaagtaaaaggcacttgtcaccaaacctgacacccgagttcca
accccaggatccacgggtggatccaggacatcaattcctgcaaatcgtcc
tctaacctccacatgtatgtcttaacacatatacaaggacacacatacac
acatcacacacataacacatacacacacctacatatacatgcacacatca
tgcaaacacacatacattaaatagatacagatttttttaaaaaaaatttt
taaatatatatattacttcccccgagtcctagttttcatgaatgaattgt
tatggtggacaaatattttattttttttttttaaagatttcttgccgggt
gtggtggcacacgcctttaatcccagcactcgggaggcagaggcaggtag
atttctgagttcaaggccagcctgatctacaaagtgagttccaggacagc
cagggctatacagagaaaccctgtctcggggggaaaaaatgtgtattagt
gttttgcctgcacgtatgcatgtatgtaaacccagttgcacagctggtgc
aagcagaggccagaagagggaatcacattcactggaactagagtacagat
ggtgcgagtctaatctaagcacaatggtgctagatcgacccagtctttga
aagatgtaagtgcttttactgctgagtcatctctcaaccccatacttata
cttcaacgattactgtctgttttctgggttatatgatggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121069856_121071019
seq2: B6Ng01-063G12.b_47_1204 (reverse)

seq1  GGGGTGGAAAGAGTTATTGGAATGACTTACAGGCTGCAGTCCAACTAATC  50
      ||||||| ||| |||||||||   |||| ||||||||||||||| | |||
seq2  GGGGTGGCAAG-GTTATTGGA--TACTT-CAGGCTGCAGTCCAAAT-ATC  45

seq1  CAACAATGGGCAGCTGTGACTGGGAAGCCCAAGAATCTAGTAGCTGCTCA  100
        || |||||||||| |||||||||||||||||||| |||||| || |||
seq2  --AC-ATGGGCAGCT-TGACTGGGAAGCCCAAGAATTTAGTAGTTGTTCA  91

seq1  GTCCCACAAGGCTAGGTGTCTCAGCTGGTCTCCTGTATATGATAGAATCC  150
      || |||||||||||||||| |||||| |||||||||||| ||||| ||||
seq2  GT-CCACAAGGCTAGGTGTTTCAGCT-GTCTCCTGTATAGGATAG-ATCC  138

seq1  CAAAGAAGCAAGCCCC-AATGCCAGTGAAGGAATGGATGTGTTAGCAAGG  199
      |||||||||||||||| ||| ||||||||||||||||||| ||||| |||
seq2  CAAAGAAGCAAGCCCCAAATCCCAGTGAAGGAATGGATGTTTTAGC-AGG  187

seq1  TGAGGG-CAAGCAGGCAAAGAGAAACCAAAAGCTTCCTTCTTCCATGTCT  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCAAGCAGGCAAAGAGAAACCAAAAGCTTCCTTCTTCCATGTCT  237

seq1  TTATATAGGCTCCCAGCAGAAGGTGTGG-CCCAGATTAAAGGTGTGTCTT  297
      ||| | |||||||||||   ||||| || |||||||||||||||||||||
seq2  TTA-AAAGGCTCCCAGCCAGAGGTGGGGCCCCAGATTAAAGGTGTGTCTT  286

seq1  -CCCACCTGAAGATCTGG-ACTAAA-GGCATGTGTCATCAC-AAGATCTG  343
       ||||||||||||||||| |||||| ||||||||||||||| ||||||||
seq2  CCCCACCTGAAGATCTGGAACTAAAGGGCATGTGTCATCACAAAGATCTG  336

seq1  GGTCACAGGAGTGTCCTCCATTTCTGGATTGTAGTTCATTCCAGATGTAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGGAGTGTCCTCCATTTCTGGATTGTAGTTCATTCCAGATGTAG  386

seq1  TC-AAGTTGACAACCAATAATACCCATCACACTGTCTTCTCTTTCAAACT  442
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTGACAACCAATAATACCCATCACACTGTCTTCTCTTTCAAACT  436

seq1  TAAATTTCACCTCCATAGTCTTCCTGGTCTCCTAGAGCGCAGTTTGGGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCACCTCCATAGTCTTCCTGGTCTCCTAGAGCGCAGTTTGGGTT  486

seq1  GCTTCTCCAGAGAACTCTGTGACACGGCCATTTGCAAGCAAGGTTACCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCAGAGAACTCTGTGACACGGCCATTTGCAAGCAAGGTTACCAT  536

seq1  GGAGTTTCCTACCTTTTGGCTAGGCCATGTGCTCAAAAACTTCTGTGGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCCTACCTTTTGGCTAGGCCATGTGCTCAAAAACTTCTGTGGAA  586

seq1  GGATCACATTACTAACTTCATTCATAGGGTTTTCGTTTGTTTGTTTGCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACATTACTAACTTCATTCATAGGGTTTTCGTTTGTTTGTTTGCTT  636

seq1  GCTTCAGAGACAGCATAACATCCTAATGTGGTCCCCTTGTTCTGCAGTTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAGACAGCATAACATCCTAATGTGGTCCCCTTGTTCTGCAGTTG  686

seq1  ACAATACTCACACTATGATTCTGAACAAAATACTGACATTAATTAAACAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCACACTATGATTCTGAACAAAATACTGACATTAATTAAACAC  736

seq1  ATAAGTTCATATACATCCAGACTTGGTCCAGGCCTGCTCCGGTGATGGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCATATACATCCAGACTTGGTCCAGGCCTGCTCCGGTGATGGTT  786

seq1  CATTCTGGAGCTTTTTAGTCTTACTTACTATACATTTAGCATTCTCAAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGAGCTTTTTAGTCTTACTTACTATACATTTAGCATTCTCAAAG  836

seq1  TTCCCAGTGAGATTCTACTTGTGAGCCTCATTTATCAGTATTTACCCTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGAGATTCTACTTGTGAGCCTCATTTATCAGTATTTACCCTGC  886

seq1  AAGGATATATTCGATTAACAGCCATGATGTCATCATGTATAATGGGATCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATATTCGATTAACAGCCATGATGTCATCATGTATAATGGGATCT  936

seq1  GGAAACTCTAATAATAATAAGGAGAAGGAAGAAGAAGAAGAGGAGGAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCTAATAATAATAAGGAGAAGGAAGAAGAAGAAGAGGAGGAGAA  986

seq1  GAAGGAGGAAGAGGAGGAGGAGGAGGAATATAATAATAAAAATGTGGAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAAGAGGAGGAGGAGGAGGAATATAATAATAAAAATGTGGAAG  1036

seq1  GGTTGGTGAGATGGCTCAGCGGTTAAGAGCATTGACGACACACACCTTTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGAGATGGCTCAGCGGTTAAGAGCATTGACGACACACACCTTTA  1086

seq1  ATCCCAGCACTTGGGAGGCAGCGGCAGGTGGATTTCTGAGTTCGAAGCCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAGGCAGCGGCAGGTGGATTTCTGAGTTCGAAGCCA  1136

seq1  GCCTGGTCTACAAAGTGAATTC  1164
      ||||||||||||||||||||||
seq2  GCCTGGTCTACAAAGTGAATTC  1158

seq1: chr3_120940846_120941838
seq2: B6Ng01-063G12.g_185_1159

seq1  CACCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATG  50

seq1  GTGGCTCACAACCATCTTTAATGAGATCTGACTCCTTCTTCTGGAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCATCTTTAATGAGATCTGACTCCTTCTTCTGGAGTAGT  100

seq1  CTGAAGACAGCAACAGTGTACTTACATATAATAATAAATAAATAAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGCAACAGTGTACTTACATATAATAATAAATAAATAAATCTT  150

seq1  AAAAAAAAGAAAAAAGAAGAAAAAGTTAAAAAAAAAAAAAGAAAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAAGAAGAAAAAGTTAAAAAAAAAAAAAGAAAAGAAAA  200

seq1  AATAAAGACAGTATCATATGGGCCCAAAAGGTGACTCAGTAAGTAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACAGTATCATATGGGCCCAAAAGGTGACTCAGTAAGTAAAAGG  250

seq1  CACTTGTCACCAAACCTGACACCCGAGTTCCAACCCCAGGATCCACGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCACCAAACCTGACACCCGAGTTCCAACCCCAGGATCCACGGGT  300

seq1  GGATCCAGGACATCAATTCCTGCAAATCGTCCTCTAACCTCCACATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGACATCAATTCCTGCAAATCGTCCTCTAACCTCCACATGTAT  350

seq1  GTCTTAACACATATACAAGGACACACATACACACATCACACACATAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAACACATATACAAGGACACACATACACACATCACACACATAACAC  400

seq1  ATACACACACCTACATATACATGCACACATCATGCAAACACACATACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACCTACATATACATGCACACATCATGCAAACACACATACATT  450

seq1  AAATAGATACAGATTTTTTTAAAAAAAATTTTTAAATATATATATTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATACAGATTTTTTTAAAAAAAATTTTTAAATATATATATTACTT  500

seq1  CCCCCGAGTCCTAGTTTTCATGAATGAATTGTTATGGTGGACAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGAGTCCTAGTTTTCATGAATGAATTGTTATGGTGGACAAATATTT  550

seq1  TATTTTTTTTTTTTAAAGATTTCTTGCCGGGTGTGGTGGCACACGCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTTTTAAAGATTTCTTGCCGGGTGTGGTGGCACACGCCTTT  600

seq1  AATCCCAGCACTCGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCGGGAGGCAGAGGCAGGTAGATTTCTGAGTTCAAGGCC  650

seq1  AGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  700

seq1  CCCTGTCTCGGGGGGAAAAAAATGTGTATTAGTGTTTTGCCTGCACGTAT  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGGGGGG-AAAAAATGTGTATTAGTGTTTTGCCTGCACGTAT  749

seq1  GCATGTATGTAAACCCAG-TGCACAGCTGGTGCAGGCAGAGGCCAGAAGA  799
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  GCATGTATGTAAACCCAGTTGCACAGCTGGTGCAAGCAGAGGCCAGAAGA  799

seq1  GGGAATCACATTCACTGGAACTAGAGTTACAGATGGTGCGAGTCTAATCT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGAATCACATTCACTGGAACTAGAG-TACAGATGGTGCGAGTCTAATCT  848

seq1  AAGCACATGGGTGCTTAGATTCGAACCCAGGTCCTCTGAAAGGATGGTAA  899
      |||||||  ||||| |||| ||| ||||||   || ||||| ||| ||||
seq2  AAGCACAATGGTGC-TAGA-TCG-ACCCAG--TCTTTGAAA-GAT-GTAA  891

seq1  GTGCTTTTAACTGCTGAGTCATCTCTCCAACCCCCAATACTTTATACTTT  949
      |||||||| ||||||||||||||||| |||||||  |||| |||||| ||
seq2  GTGCTTTT-ACTGCTGAGTCATCTCT-CAACCCC--ATAC-TTATAC-TT  935

seq1  CAACAGATTTACTGTCTGTTTTCTTGGGGTATATATGAT-GAGAG  993
      |||| || ||||||||||||||||  |||| |||||||| |||||
seq2  CAAC-GA-TTACTGTCTGTTTTCT--GGGT-TATATGATGGAGAG  975