BAC Information

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BAC

Clone NameB6Ng01-063H18
Chromosome3 (Build37)X (Build37)
Map Location 41,059,167 - 41,059,737159,878,879 - 159,879,990
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063H18.bB6Ng01-063H18.g
ACCDH883564DH883565
length9071,083
definitionDH883564|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H18, 5' end.DH883565|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,167 - 41,059,737)(159,878,879 - 159,879,990)
sequence
gaattctttgttcagctcttagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggataggtaaagttcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttat
gaggtcccatttatcgattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttctcctgtacccatatcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctgattttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggatcaatttgca
ttcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagcttccttgtcaaagatcaagtg
accataggtgtgtggattcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtaccatacagttttgaccacaattgct
ctgcagtacagttttaggtccggcatgatgattccaccagaggttctttt
atccttgagaagagtttttgctatcctcggttttttgttattccagatga
atctgccgattgccctttctaattcattgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatggccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttctttagagacttgaagttctatcataca
gatcttt
gaattctctagaacaaagaaacgaaaaaaggtagcctcttatcttcagag
actacggacaaaaatgcatctcaactttgtatttaatgtcacattcctac
gaaaaaaatgctctctctggacaactcagaaaattagtacaaaatcctat
atctgagagtagaataatgtgtagcatgaatttataattaaaaaaaaata
ccctgtgacatcatgcagtatgtccaaatactctaatgttccatgttttc
ctcgatgacccttcctcaagatatcacttgagaatcagtcaacaaaacaa
ataaggcaaacaacaaaaacaattttaaaatctgctgatagtaagtcaca
gtgaaggcttgggggatagctcagcgttcagaggacttagctgctcttta
agaagagcaaatttaattcccagtactcacatgacagctgacaaacacct
gtaatttcagctccaagatatgtgatgtccttttttaacttctggggggt
actacatacacacacataaaagtaaatcttaaaataataaagaaataata
gccagaatataaaatcaaactgtccatcaactgagaaatggcaataataa
tgtagtatgtttacatgacagaatcttagtcagttgaaaaaagatgaaat
tctgttgtttgccacaacatgagtggaaatgacgagaaaccattacatta
aataaagtagatcccactcaggaattcaaatgcagcatgatctcattcgt
gtgtagaaagggcaatgttgatgctgaactggtgaaatggctcacttggt
aaatttttgtgctatgagagtacaagaacccaagttcagaactcaagtac
caccacaaccaccatcacccacacacagatataaatgtccttagatgttg
agagtagatggtagttacactggcttgtgagagtggaccttgtatgggtc
aggagatgagaaagtgggcatgagtacagctacgattatagatcctctga
ggtggctacgatatgtactgcataactcaaagctataaaatgttgaatgc
ttttgcttaaagaatgatactgaatacagatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059167_41059737
seq2: B6Ng01-063H18.b_46_616 (reverse)

seq1  TGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGA  50
      ||||||||||||||||||| |||||||||||| |||||||||||| ||||
seq2  TGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGA  50

seq1  AACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  100
       | |||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GATGAATCCACACACCTATGGTCACTTGATCTTTGACAAGGAAGCTAAAA  100

seq1  CCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAAC  150

seq1  TGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTG  200
      |||  |||||||||||||||||||| |||||||||| | |||||||||||
seq2  TGGCGGTTATCATGTAGAAGAATGCAAATTGATCCATTTCTATCTCCTTG  200

seq1  TACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGA  250
      |||||||||||||||||||||||| ||||||| |||||||||| ||||||
seq2  TACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAATCAGAGA  250

seq1  CACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTC  300
      ||||||||||||||||||||||||| ||||||||||| ||||||||||  
seq2  CACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGT  300

seq1  ACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATT  350
      ||||| |||||||||||| |||||||||||||||||||||||||||||| 
seq2  ACAGGAGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATC  350

seq1  GAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAA  400
       ||||| || |||||||||||||| ||| |||||||||||||||| ||||
seq2  AAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAA  400

seq1  AAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATC  449
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  AAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGAAC  450

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGA  499
      ||||||||||| ||||| ||||||||||||||||||||||||||| ||||
seq2  TTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATATATATAAAGA  500

seq1  ACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGG  549
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  ACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGG  549

seq1  GCTCAGAGCTAAACAAAGAATT  571
      ||| |||||| |||||||||||
seq2  GCTAAGAGCTGAACAAAGAATT  571

seq1: chrX_159878879_159879990
seq2: B6Ng01-063H18.g_67_1149

seq1  GAATTCTCTAGAACAAAGAAACGAAAAAAGGTAGCCTCTTATCTTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAACAAAGAAACGAAAAAAGGTAGCCTCTTATCTTCAGAG  50

seq1  ACTACGGACAAAAATGCATCTCAACTTTGTATTTAATGTCACATTCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGGACAAAAATGCATCTCAACTTTGTATTTAATGTCACATTCCTAC  100

seq1  GAAAAAAATGCTCTCTCTGGACAACTCAGAAAATTAGTACAAAATCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATGCTCTCTCTGGACAACTCAGAAAATTAGTACAAAATCCTAT  150

seq1  ATCTGAGAGTAGAATAATGTGTAGCATGAATTTATAATTAAAAAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAGTAGAATAATGTGTAGCATGAATTTATAATTAAAAAAAAATA  200

seq1  CCCTGTGACATCATGCAGTATGTCCAAATACTCTAATGTTCCATGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGACATCATGCAGTATGTCCAAATACTCTAATGTTCCATGTTTTC  250

seq1  CTCGATGACCCTTCCTCAAGATATCACTTGAGAATCAGTCAACAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATGACCCTTCCTCAAGATATCACTTGAGAATCAGTCAACAAAACAA  300

seq1  ATAAGGCAAACAACAAAAACAATTTTAAAATCTGCTGATAGTAAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAAACAACAAAAACAATTTTAAAATCTGCTGATAGTAAGTCACA  350

seq1  GTGAAGGCTTGGGGGATAGCTCAGCGTTCAGAGGACTTAGCTGCTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTTGGGGGATAGCTCAGCGTTCAGAGGACTTAGCTGCTCTTTA  400

seq1  AGAAGAGCAAATTTAATTCCCAGTACTCACATGACAGCTGACAAACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCAAATTTAATTCCCAGTACTCACATGACAGCTGACAAACACCT  450

seq1  GTAATTTCAGCTCCAAGATATGTGATGTCCTTTTTTAACTTCTGGGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCAGCTCCAAGATATGTGATGTCCTTTTTTAACTTCTGGGGGGT  500

seq1  ACTACATACACACACATAAAAGTAAATCTTAAAATAATAAAGAAATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATACACACACATAAAAGTAAATCTTAAAATAATAAAGAAATAATA  550

seq1  GCCAGAATATAAAATCAAACTGTCCATCAACTGAGAAATGGCAATAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAATATAAAATCAAACTGTCCATCAACTGAGAAATGGCAATAATAA  600

seq1  TGTAGTATGTTTACATGACAGAATCTTAGTCAGTTGAAAAAAGATGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTATGTTTACATGACAGAATCTTAGTCAGTTGAAAAAAGATGAAAT  650

seq1  TCTGTTGTTTGCCACAACATGAGTGGAAATGACGAGAAACCATTACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTTGCCACAACATGAGTGGAAATGACGAGAAACCATTACATTA  700

seq1  AATAAAGTAGATCCCACTCAGGAATTCAAATGCAGCATGATCTCATTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTAGATCCCACTCAGGAATTCAAATGCAGCATGATCTCATTCGT  750

seq1  GTGTAGAAAGGGCAATGTTGATGCTGAACTGGTGAAATGGCTCACTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAAGGGCAATGTTGATGCTGAACTGGTGAAATGGCTCACTTGGT  800

seq1  AAATTTTTGTGCTATGAGAGTACAAGAACCCAAGTTCAGAACCCAAGTAC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAATTTTTGTGCTATGAGAGTACAAGAACCCAAGTTCAGAACTCAAGTAC  850

seq1  CACCACAACCACCATCACCCACACACAGATATAAATGTCCTTAGATGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAACCACCATCACCCACACACAGATATAAATGTCCTTAGATGTTG  900

seq1  AGAGTAGAATGGTAGTTACCACTGGCTTGTGAGAGTGGACCTTGTATGGG  950
      ||||||| |||||||||| |||||||||||||||||||||||||||| ||
seq2  AGAGTAG-ATGGTAGTTA-CACTGGCTTGTGAGAGTGGACCTTGTAT-GG  947

seq1  GTCAGGGAGATGAGGAAAAGTGGGCCAATGAGTACCAAGCTACAGATATA  1000
      |||| |||||||||  |||||||||  ||||||||  |||||| ||| ||
seq2  GTCA-GGAGATGAG--AAAGTGGGC--ATGAGTAC--AGCTAC-GAT-TA  988

seq1  TAGGATCACTACATGAAGGTGGCTACAGATATGTACTGCATAACTCAAAA  1050
      || |||| ||   || |||||||||| ||||||||||||||||||| |||
seq2  TA-GATC-CT--CTG-AGGTGGCTAC-GATATGTACTGCATAACTC-AAA  1031

seq1  GCTATAAAAAATGTTTAGAATGCTTTTGCTATAAAGAAATGATAAACATT  1100
      |||||  ||||||||  ||||||||||||| ||||| ||||||    | |
seq2  GCTAT--AAAATGTT--GAATGCTTTTGCT-TAAAG-AATGAT----ACT  1071

seq1  TAATACAGATGT  1112
       |||||||||||
seq2  GAATACAGATGT  1083