BAC Information

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BAC

Clone NameB6Ng01-063L15
Chromosome3 (Build37)5 (Build37)
Map Location 41,059,197 - 41,059,72071,812,726 - 71,813,570
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063L15.bB6Ng01-063L15.g
ACCDH883730DH883731
length9361,081
definitionDH883730|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L15, 5' end.DH883731|Mus musculus domesticus DNA, BAC clone: B6Ng01-063L15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,197 - 41,059,720)(71,812,726 - 71,813,570)
sequence
gaattgtttgttcaggtgtgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatctttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtgcaaggagataagtatggatcggttcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtaaattgcttttggcagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttcatcttct
gagatcttctttaatttctttcttcagagacttgaagttttatcatacag
atctttacttccttagtagagtcacgccgagatatt
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttttatttattgtatattagtccc
ctatcaggtttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtc
ctattcaggaattttcctgctgtacccatatctttgaggcttttccctac
ttcctcctctataagtttcagagtttctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattcac
attcttctatatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctcttttccactggacagtttttgctcccttgtcaaagatcaagt
gaccataggtgtgtgggtgcatttctgggtcttcaattctattccattga
tctatttgtctgtcgttataccagtaccatgcagtttttatcacaattgg
tctgtagtacagctttaggtcaggcatggtgattccactggaggtttttt
tatccatgagcagagtttttcctatcctaggtctttgtatccttctatct
atctatctatctatctatctatctatctatctatctatcaatatttattt
ctttgtttgtgtgggtgtcatgtcatagtgtgtaagatgttatgagaaca
ctgtactgggtcccaggaattcagcttatttgtcagccttggatacagtt
ccttttacccattgagcccactctccaagaccctggaattttctggtgtc
atatgatgtagactcatgtaatgttttgctgaagcataattttgagatgt
ttggatgaggcacactggtgagatgacacatgatgtttgaagagtattag
tggactctagggacaggtaacaagaatgcttgcgaatgttttgcatatat
actacttaaggacattcttgttcttccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059197_41059720
seq2: B6Ng01-063L15.b_65_589 (reverse)

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  50
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||  
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAACC  150

seq1  GATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||  | |||||||||| |||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGCACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCA  300
      ||||||||||||||||||  |||||||||| ||||||| | |||||||||
seq2  AAAGCCTTGAAGATATGGGTACAGGGGAAAGATTCCTGAACAGAACAGCA  300

seq1  ATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACT  350
      ||||||||  ||||||||| |||||| |||||||||||||| ||||||||
seq2  ATGGCTTGCTCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCAC  399
       ||||| |||||||||||||||||||||||||||| |||||||||  |||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAGGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  499
      |||||||| |||||| ||||||||||||||||||| | ||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAAAAAATGGGGCTCA  524
      |||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCA  525

seq1: chr5_71812726_71813570
seq2: B6Ng01-063L15.g_311_1149

seq1  TTGCTGTCCTATTCAGGAATTTTCCTGCTGTACCCATATCTTTGAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCCTATTCAGGAATTTTCCTGCTGTACCCATATCTTTGAGGCTT  50

seq1  TTCCCTACTTCCTCCTCTATAAGTTTCAGAGTTTCTGGTTTTATGTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACTTCCTCCTCTATAAGTTTCAGAGTTTCTGGTTTTATGTGGAG  100

seq1  TTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGAT  150

seq1  CAATTCACATTCTTCTATATGATAACCACCAGTTGTGCCAGCACCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCACATTCTTCTATATGATAACCACCAGTTGTGCCAGCACCATTTG  200

seq1  TTGAAAATGCTGTCTCTTTTCCACTGGACAGTTTTTGCTCCCTTGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGCTGTCTCTTTTCCACTGGACAGTTTTTGCTCCCTTGTCAAA  250

seq1  GATCAAGTGACCATAGGTGTGTGGGTGCATTTCTGGGTCTTCAATTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGTGACCATAGGTGTGTGGGTGCATTTCTGGGTCTTCAATTCTAT  300

seq1  TCCATTGATCTATTTGTCTGTCGTTATACCAGTACCATGCAGTTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGATCTATTTGTCTGTCGTTATACCAGTACCATGCAGTTTTTATC  350

seq1  ACAATTGGTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGGTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACTGGA  400

seq1  GGTTTTTTTATCCATGAGCAGAGTTTTTCCTATCCTAGGTCTTTGTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTATCCATGAGCAGAGTTTTTCCTATCCTAGGTCTTTGTATCC  450

seq1  TTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAAT  500

seq1  ATTTATTTCTTTGTTTGTGTGGGTGTCATGTCATAGTGTGTAAGGATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTATTTCTTTGTTTGTGTGGGTGTCATGTCATAGTGTGTAA-GATGTT  549

seq1  ATGAGAACACTGTACT-GGTCCCAGGAATTCAGCTTAATTTGTCAGCCTT  599
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  ATGAGAACACTGTACTGGGTCCCAGGAATTCAGCTT-ATTTGTCAGCCTT  598

seq1  GGATACAGTTCCTTTTACCCATTGAGCCCACTCTCCAAGACCCTGGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGTTCCTTTTACCCATTGAGCCCACTCTCCAAGACCCTGGAATT  648

seq1  TTCTGGTTGTCATATGATGTAGACTCATGTAATGTTTTGCTGAAGCATAT  699
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGG-TGTCATATGATGTAGACTCATGTAATGTTTTGCTGAAGCATAA  697

seq1  TTATGAGATGTCTGGATGAGGCAACACCTGTGAGATGACACATGATGTTT  749
      || |||||||| |||||||||| ||||  |||||||||||||||||||||
seq2  TTTTGAGATGTTTGGATGAGGC-ACACTGGTGAGATGACACATGATGTTT  746

seq1  GGAAAGAGTATAAGTGGGACTCAAGGGACA-GTGACAAG-ATGCTTGCAG  797
      |  |||||||| ||| |||||| ||||||| || ||||| |||||||| |
seq2  G--AAGAGTATTAGT-GGACTCTAGGGACAGGTAACAAGAATGCTTGC-G  792

seq1  TATTGTTTGCATATTACCTACTAAAGGACA-TCTTGCTTCTTTCCATGT  845
       ||  |||||||||   ||||| ||||||| ||||| ||| ||||||||
seq2  AATGTTTTGCATATATACTACTTAAGGACATTCTTG-TTC-TTCCATGT  839