BAC Information

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BAC

Clone NameB6Ng01-063N05
Chromosome3 (Build37)
Map Location 147,817,161 - 147,818,082
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N05.bB6Ng01-063N05.g
ACCDH883800DH883801
length1,2871,127
definitionDH883800|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N05, 5' end.DH883801|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatacaaatgctaaactgaaatatgtatgtatatatatatatat
atatatatatatatatatatatatatatatatatatattctgatatatat
atctgacactacaaccttatgagacacatactctgaaaattcccttgaat
tcattttctgttgaccatctatagctgggtatacattctactcatcagaa
taacttgtttctccaataagacacccttggaggaaaatgaaattttcctt
tgcaagtatttatctgttggagataactcctagatttctaacgagaacat
gtatccacttcttttagctttaggactttatctgctacaggctctgtgca
atgctttagtagctgggagttcatatatgtgtctgtcttgaagatttaga
tgccttgttttctttttatccttcatccttttggctcttacactctttat
gtttccacttctgcagggttgtcagagccctaaggagatttgatggaggc
atccagtttaaggctaaatgttccaaggtctctcacttgctgcatattgt
tgggcggtgagtgtttgtatttgttctcaccttctgtacaggaagcttct
ctgatgatggctgagcaagtccctgatctatgagtatatctgaattctat
taggattccttttagtagatatgtataaataaacaaactgaaaacataaa
ccatgcaatcatctcattagatgtataaaatgcctttgtaaaatcaagca
cccctgcaagacaaaagtcctggaatattaggtttacaagggacatgact
caacacaataaaggcagtttacagcaagctcatagccaacatcaacttaa
atggatagaaactcaaagcaattttagtaaaaccaggaacaagacaaggt
tgttcatctttccatacctagtcaatatagtacttgaaatctagagcagt
gatacaactcaaggggaccaaagggattagattgtaagaaagaattcaaa
gtaagtttacttgcagatgatgtgatagtaaatataactgacttaaaagt
cttaccagggaacttttccagccggtacctgcatctgaatacaaaatata
ctctccttaacacacacaccgcacaccacgatcctccttatgcctttcta
tattaatatgcaatgacctagaatgagtctggaaataagctctcccatat
tgcgattattaacttaagtcatcacgcatatagactttatgatgaacacc
atgccacaacagaagcgcgctgcatctttagcacaac
gaattctttgttttctttggagactcagttgtgtcatgcatatttttttc
tggaacctgtcttatgaaaggatgttttgctgaagcagacaaatgagagg
aagttctgctgagaacaggtacatgctgttttctggaagctaccttagga
aagagcatctgatgctttgttgcaatggatgcttgagagtgcccaagatg
tttaggaagaatatagatataaccccacagacagtgagaggacactcttg
cattggttcaccttgtaatgctttgctggtttttgctgatatttgcttgt
tttgattttttagagaaaaaggtgccaaaaaaatttcctcatggtatcct
ggcggtttctcctggggactcgcggttgctacggatttgcatttggcgtt
tgcaattggactgggttggtgcagctggttcctgtttggaatcaccccca
aaaaactacttctaaacaggtgcctatccccatttcctattgaacctttt
tcttccctacctttgtgcagtgggctagaagggaggtcgaacccttatta
aagtagattttgaaaaatataatcctacaaaaaatagctaaaaatgtgga
tttttaaaaatattttcaaccttaaaaaatgataaatgcttgaactgatt
tgggacaataaccttgctatgattgtaacatttgtgtatggaaagtttat
actgtactccataaatttatataattattatatgccaaggaatagcttat
gttagaaacagaaaataataaaaattagatgagatttaaaagccattgat
cagatttaagtggattaaggactccacataaaaccagagacactgaaact
tatagaggaaaaagtgggggaaagcctcgaagatatgggtacaggggaaa
aattcctgatagaacagcaatggcttgtgctataagattgagatcaacaa
atggactcataaaattgcacgttctgcaggcaaagacacgtcatagacaa
aagcacagaagatggaaagatcttactatctaatcgaaggactaattcca
tataataaggactcagaggtgactcagaaatctaatatccattaaaatgg
ctcagagctaaaagaattgtcactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147817161_147818082
seq2: B6Ng01-063N05.g_319_1193

seq1  TTGGTTCACCTTGTAATGCTTTGCTGGTTTTTGCTGATATTTGCTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCACCTTGTAATGCTTTGCTGGTTTTTGCTGATATTTGCTTGTTT  50

seq1  TGATTTTTTAGAGAAAAAGGTGCCAAAAAAATTTCCTCATGGTATCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTAGAGAAAAAGGTGCCAAAAAAATTTCCTCATGGTATCCTGG  100

seq1  CGGTTTCTCCTGGGGACTCGCGGTTGCTACGGATTTGCATTTGGCGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCTCCTGGGGACTCGCGGTTGCTACGGATTTGCATTTGGCGTTTG  150

seq1  CAATTGGACTGGGTTGGTGCAGCTGGTTCCTGTTTGGAATCACCCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGACTGGGTTGGTGCAGCTGGTTCCTGTTTGGAATCACCCCCAAA  200

seq1  AAACTACTTCTAAACAGGTGCCTATCCCCATTTCCTATTGAACCTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTTCTAAACAGGTGCCTATCCCCATTTCCTATTGAACCTTTTTC  250

seq1  TTCCCTACCTTTGTGCAGTGGGCTAGAAGGGAGGTCGAACCCTTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACCTTTGTGCAGTGGGCTAGAAGGGAGGTCGAACCCTTATTAAA  300

seq1  GTAGATTTTGAAAAATATAATCCTACAAAAAATAGCTAAAAATGTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTGAAAAATATAATCCTACAAAAAATAGCTAAAAATGTGGATT  350

seq1  TTTAAAAATATTTTCAACCTTAAAAAATGATAAATGCTTGAACTGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATTTTCAACCTTAAAAAATGATAAATGCTTGAACTGATTTG  400

seq1  GGACAATAACCTTGCTATGATTGTAACATTTGTGTATGGAAAGTTTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAACCTTGCTATGATTGTAACATTTGTGTATGGAAAGTTTATAC  450

seq1  TGTACTCCATAAATTTATATAATTATTATATGCCAAGGAATAGCTTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTACTCCATAAATTTATATAATTATTATATGCCAAGGAATAGCTTATGT  500

seq1  TAGAAACAGAAAATAATAAAAATTAGATGAGATTTAAAAAGCCATTGATC  550
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGAAACAGAAAATAATAAAAATTAGATGAGATTT-AAAAGCCATTGATC  549

seq1  AGATTTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACT  600
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATTTAAGTGGATTAAGG-ACTCCACATAAAACCAGAGACACTGAAACT  598

seq1  TATAGAGGAGAAAGTGGGGGAAAGCCTCGAAGATATGGGTACAGGGGAAA  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGAAAAAGTGGGGGAAAGCCTCGAAGATATGGGTACAGGGGAAA  648

seq1  AATTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATTGAGAATCAAC  700
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AATTCCTG-ATAGAACAGCAATGGCTTGTGCTATAAGATTGAG-ATCAAC  696

seq1  AAATGGGACCTCATAAAATTGCAACGGTTCTGCAAGGCAAAAGACACCGT  750
      ||||||   ||||||||||||||   ||||||| |||| ||||||| |||
seq2  AAATGG--ACTCATAAAATTGCA--CGTTCTGC-AGGC-AAAGACA-CGT  739

seq1  CAATAAGACAAAAAGGCCACCAAGAGATTGGGAAAGGATCTTTACCTATC  800
      ||   ||||||||  ||   ||  ||||  ||||| ||||||   |||||
seq2  CA--TAGACAAAA--GC--ACAGAAGAT--GGAAA-GATCTT--ACTATC  778

seq1  CTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAG  850
         ||||  |    |||||||| |||   |||||  ||| |||||   ||
seq2  --TAATCGAA----GGACTAAT-TCC---ATATAATAAGGACTCA--GAG  816

seq1  GTGGACTTCAGAAAATCAAATAATCCCATTAAAAAATGGGGCTCAGAGCT  900
      || ||| |||| ||||| ||||   |||||||||     |||||||||||
seq2  GT-GAC-TCAG-AAATCTAATA--TCCATTAAAA----TGGCTCAGAGCT  857

seq1  AAACAAAGAATTGTCACCTGAG  922
      |   |||||||||||| |||||
seq2  A---AAAGAATTGTCA-CTGAG  875