BAC Information

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BAC

Clone NameB6Ng01-064C20
Chromosome3 (Build37)
Map Location 54,197,498 - 54,277,953
singlet/doubletdoublet
Overlap geneLOC100039951
Upstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn
Downstream geneLOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C20.bB6Ng01-064C20.g
ACCDH884043DH884044
length1,112872
definitionDH884043|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C20, 5' end.DH884044|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,197,498 - 54,198,628)(54,277,085 - 54,277,953)
sequence
gaattctacagaaactactctgaggtgcagagaataaatgttgtatggta
tggatcattgtggaaactagaaagggaatttaacaaaattcttaaataaa
aatgaaaaaaagcaaaccttccctaaaacttccgggatattgccaatgtg
gttctgggaggaaagttcaaaagctatgagtgtttataataatcagagat
tccccaagtgaaaaacaatgcatcacaaagtcatagtcaacacagaaaac
aagtcaagacccggtgcagtaggcagtaagaatcatcaaagatcagcgag
agatttaggggaatggagggctaactggacaatgcacaggactgagcaaa
ccaggatttcttcttcatcttcttttttttaaaaaacaagactgacaaat
ctctagccaagttatccgagcaaagagaatagatccatattaatgaaatt
agagataaaataggtacttaatacaaattccaataaaatatagagaatca
ttaggtagtactttggaaatatatactctaagacagtggttctcaacctt
cataatgctgagaccctttaatacccgtgtactatagtgaccccccaacc
ataaaattatttttgttgctacttcataactgtaattttgctactgttat
gaatcataatgtaaatatctttttttcccatggtcctggcaactcctgtg
aaatggttctgtcaggggttaagaactgctgctctaaaaacatgaaaatt
acaaatgagattgataaattcctagatatatgtgtcttctcaaaattaag
tcaagaatgtaaaagcaatttacacataggcataataatggataaaattg
ataccatattaaaagttcccaataaagaaagcccagaactgaatctattc
tttactcaaaccctgacactgcctagaacaaacacactgccactgaacag
ggtacataccagggcaaactctcaaggtaaaacaagaacctgtgcatcct
cttagaagcagatgtgtggagcaggagagagtcagcagggaagctcatca
tgcttccactctgaggactggcacatggtgaagggagagccattctcact
agttgtctgatt
gaattcctttcaataacacaaagccaattttgtgggttcactgaaaaata
agtaaccagtttgtgtttctaggctctaaacttaaatacagaactgactt
gtaggcagcaacagaaggggactctcatggagggattctttgaaggtctt
aaggagccctggaatgactgcttagttctgtcatgcatatatttaaagac
agcaaaattaatacaaaacaaaaacaaaaacaaaacaaaacaaaacagca
aacaaaaaagcttaaaatagctcagggtcttgaaagatagttcagtggtt
aagagcactagctgctcttgcagagtgtctaggttctatttctagcaccc
acaattacttgtaacttcagtcccaggggacgctgacaccctcttctggc
ttctacaggtactgtatgctcacacattctctctctctctctctctctct
ctctctctctcacacacacacacacacaaacatacacacacactgaaaga
gaaaataaatctctttaaaaagagaaaaaaaatccaacagtacacaacta
gggttcatagtgatgaccttactgcaccctcaaattaaaattatatttcc
ttttgcaaacaaatgcttcagttccaactttggttatgtactcatatgga
aaacataattcagacctctgagaaatgtgctttgagctccaactcaaagt
gataattatgactacctaatgacaattgactggatttccagaacattcaa
aggaagaaataactcatgttcttgagcatctcaagtcctgattgttattc
cataaagaattatgtccttccagtagagacatttatctgtagaaagaggg
agaggaggaggaggaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54197498_54198628
seq2: B6Ng01-064C20.b_32_1143

seq1  GAATTCTACAGAAACTACTCTGAGGTGCAGAGAATAAATGTTGTATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAAACTACTCTGAGGTGCAGAGAATAAATGTTGTATGGTA  50

seq1  TGGATCATTGTGGAAACTAGAAAGGGAATTTAACAAAATTCTTAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATTGTGGAAACTAGAAAGGGAATTTAACAAAATTCTTAAATAAA  100

seq1  AATGAAAAAAAGCAAACCTTCCCTAAAACTTCCGGGATATTGCCAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAAAAGCAAACCTTCCCTAAAACTTCCGGGATATTGCCAATGTG  150

seq1  GTTCTGGGAGGAAAGTTCAAAAGCTATGAGTGTTTATAATAATCAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGAGGAAAGTTCAAAAGCTATGAGTGTTTATAATAATCAGAGAT  200

seq1  TCCCCAAGTGAAAAACAATGCATCACAAAGTCATAGTCAACACAGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGTGAAAAACAATGCATCACAAAGTCATAGTCAACACAGAAAAC  250

seq1  AAGTCAAGACCCGGTGCAGTAGGCAGTAAGAATCATCAAAGATCAGCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGACCCGGTGCAGTAGGCAGTAAGAATCATCAAAGATCAGCGAG  300

seq1  AGATTTAGGGGAATGGAGGGCTAACTGGACAATGCACAGGACTGAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGGGGAATGGAGGGCTAACTGGACAATGCACAGGACTGAGCAAA  350

seq1  CCAGGATTTCTTCTTCATCTTCTTTTTTTTAAAAAACAAGACTGACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATTTCTTCTTCATCTTCTTTTTTTTAAAAAACAAGACTGACAAAT  400

seq1  CTCTAGCCAAGTTATCCGAGCAAAGAGAATAGATCCATATTAATGAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCAAGTTATCCGAGCAAAGAGAATAGATCCATATTAATGAAATT  450

seq1  AGAGATAAAATAGGTACTTAATACAAATTCCAATAAAATATAGAGAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAATAGGTACTTAATACAAATTCCAATAAAATATAGAGAATCA  500

seq1  TTAGGTAGTACTTTGGAAATATATACTCTAAGACAGTGGTTCTCAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGTACTTTGGAAATATATACTCTAAGACAGTGGTTCTCAACCTT  550

seq1  CATAATGCTGAGACCCTTTAATACCCGTGTACTATAGTGACCCCCCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGCTGAGACCCTTTAATACCCGTGTACTATAGTGACCCCCCAACC  600

seq1  ATAAAATTATTTTTGTTGCTACTTCATAACTGTAATTTTGCTACTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATTTTTGTTGCTACTTCATAACTGTAATTTTGCTACTGTTAT  650

seq1  GAATCATAATGTAAATATCTTTTTTTCCCATGGTCCTGGCAACTCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAATGTAAATATCTTTTTTTCCCATGGTCCTGGCAACTCCTGTG  700

seq1  AAATGGTTCTGTCAGGGGTTAAGAACTGCTGCTCTAAAAACATGAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTCTGTCAGGGGTTAAGAACTGCTGCTCTAAAAACATGAAAATT  750

seq1  ACAAATGAGATTGATAAATTCCTAGATATATGTGTCTTCTCAAAATTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAGATTGATAAATTCCTAGATATATGTGTCTTCTCAAAATTAAG  800

seq1  TCAAGAATGTAAAAGCAATTTACACATAGGCATAATAATGGATAAAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATGTAAAAGCAATTTACACATAGGCATAATAATGGATAAAATTG  850

seq1  ATACCATATTAAAAGTTCCCAATAAAGAAAGCCCAGAACTGAAATCTATT  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACCATATTAAAAGTTCCCAATAAAGAAAGCCCAGAACTG-AATCTATT  899

seq1  CTTTACCCAAACCCTGACACTGCCTAGAACAAACAACACTGCCACTGAAC  950
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTACTCAAACCCTGACACTGCCTAGAACAAAC-ACACTGCCACTGAAC  948

seq1  AGGGTACATACCAGGGCAAACTCTCAAGGTAAAACAAGAACCTGTGCCAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGGTACATACCAGGGCAAACTCTCAAGGTAAAACAAGAACCTGTG-CAT  997

seq1  CCTCTTTAGAAAGCAGATGTGTGGAGCAAGGAGAGAGGTCAGCAGGGAAA  1050
      |||| |||| ||||||||||||||||| |||||||| |||||||||| ||
seq2  CCTC-TTAG-AAGCAGATGTGTGGAGC-AGGAGAGA-GTCAGCAGGG-AA  1042

seq1  GCTTCATTCATGCCTCCAACTCTGAGGACCTGGGGCCACATGGTAGAAAG  1100
      || ||| |||||| ||| |||||||||| ||||   ||||||||   |||
seq2  GC-TCA-TCATGCTTCC-ACTCTGAGGA-CTGG---CACATGGT--GAAG  1083

seq1  GGAGAGCCAATTCTCACTAGTTGTCCTGATT  1131
      |||||||| ||||||||||||||| ||||||
seq2  GGAGAGCC-ATTCTCACTAGTTGT-CTGATT  1112

seq1: chr3_54277085_54277953
seq2: B6Ng01-064C20.g_68_939 (reverse)

seq1  TCCTCC-TCCTCCTCCTCCT---CCTCCTTCTACAGATAAAATGTCTCTA  46
      |||||| |||||||||||||   |||| |||||||||| |||||||||||
seq2  TCCTCCTTCCTCCTCCTCCTCTCCCTCTTTCTACAGAT-AAATGTCTCTA  49

seq1  CTGGAAGGACATAATTCTTTATGGAATAACAATCAGGACTTGAGATGCTC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGACATAATTCTTTATGGAATAACAATCAGGACTTGAGATGCTC  99

seq1  AAGAACATGAGTTATTTCTTCCTTTGAATGTTCTGGAAATCCAGTCAATT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATGAGTTATTTCTTCCTTTGAATGTTCTGGAAATCCAGTCAATT  149

seq1  GTCATTAGGTAGTCATAATTATCACTTTGAGTTGGAGCTCAAAGCACATT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAGGTAGTCATAATTATCACTTTGAGTTGGAGCTCAAAGCACATT  199

seq1  TCTCAGAGGTCTGAATTATGTTTTCCATATGAGTACATAACCAAAGTTGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGGTCTGAATTATGTTTTCCATATGAGTACATAACCAAAGTTGG  249

seq1  AACTGAAGCATTTGTTTGCAAAAGGAAATATAATTTTAATTTGAGGGTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCATTTGTTTGCAAAAGGAAATATAATTTTAATTTGAGGGTGC  299

seq1  AGTAAGGTCATCACTATGAACCCTAGTTGTGTACTGTTGGATTTTTTTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTCATCACTATGAACCCTAGTTGTGTACTGTTGGATTTTTTTTC  349

seq1  TCTTTTTAAAGAGATTTATTTTCTCTTTCAGTGTGTGTGTATGTTTGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAAGAGATTTATTTTCTCTTTCAGTGTGTGTGTATGTTTGTGT  399

seq1  GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGT  449

seq1  GTGAGCATACAGTACCTGTAGAAGCCAGAAGAGGGTGTCAGCGTCCCCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATACAGTACCTGTAGAAGCCAGAAGAGGGTGTCAGCGTCCCCTG  499

seq1  GGACTGAAGTTACAAGTAATTGTGGGTGCTAGAAATAGAACCTAGACACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAGTTACAAGTAATTGTGGGTGCTAGAAATAGAACCTAGACACT  549

seq1  CTGCAAGAGCAGCTAGTGCTCTTAACCACTGAACTATCTTTCAAGACCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGAGCAGCTAGTGCTCTTAACCACTGAACTATCTTTCAAGACCCT  599

seq1  GAGCTATTTTAAGCTTTTTTGTTTGCTGTTTTGTTTTGTTTTGTTTTTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATTTTAAGCTTTTTTGTTTGCTGTTTTGTTTTGTTTTGTTTTTGT  649

seq1  TTTTGTTTTGTATTAATTTTGCTGTCTTTAAATATATGCATGACAGAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTATTAATTTTGCTGTCTTTAAATATATGCATGACAGAACT  699

seq1  AAGCAGTCATTCCAGGGCTCCTTAAGACCTTCAAAGAATCCCTCCATGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCATTCCAGGGCTCCTTAAGACCTTCAAAGAATCCCTCCATGAG  749

seq1  AGTCCCCTTCTGTTGCTGCCTACAAGTCAGTTCTGTATTTAAGTTTAGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTTCTGTTGCTGCCTACAAGTCAGTTCTGTATTTAAGTTTAGAG  799

seq1  CCTAGAAACACAAACTGGTTACTTATTTTTCAGTGAACCCACAAAATTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAACACAAACTGGTTACTTATTTTTCAGTGAACCCACAAAATTGG  849

seq1  CTTTGTGTTATTGAAAGGAATTC  869
      |||||||||||||||||||||||
seq2  CTTTGTGTTATTGAAAGGAATTC  872