BAC Information

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BAC

Clone NameB6Ng01-064D03
Chromosome12 (Build37)3 (Build37)
Map Location 32,631,616 - 32,631,84374,841,600 - 74,842,760
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064D03.bB6Ng01-064D03.g
ACCDH884055DH884056
length6791,141
definitionDH884055|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D03, 5' end.DH884056|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(74,841,600 - 74,842,760)
sequence
gaattcatgaagttcttaggcaaatggatgatctgaaggatatcatcctg
agtgaggtaacccaatcacaaaagaagtcacttgatatgcactcactgat
aagtagatattagcccagaaacttagaatacctaagatacaatttgcaaa
acacaagaaaatcaagaagaaagaagaccaaagcatggatactgcattcc
tccttagaatagggaacaaaatacccatgaaaggagttacagaggcaaag
tttggagctgagaggaaatgatggatcatccagagactgctccaccaagg
gatccatcccataatcagccaccaaatgcagacactgttgcatataccag
caaaattttgctgaaaggacccttgatatagctgtctcttgggagactat
accagtacctggcaaatacagaagtggatgctcataatcatctattggat
ggaacacagggcccccaatggaggagctagagaaagtacccaagagctga
aggggtctgcaaccctataggtggaacaacaatatgaacttatcagtacc
cccagagatcctgtctctagctgcatatgcagaagatggcctagttgacc
ctcattgggtgcgaagccccttggtcttgcaaactttatatgccccagta
caggggccgtcaaggccaagaagtgggag
gaattctaggaattgctgattcaggctggtttggatttgataaaataatc
tatcaaagtgtcatgtccatcacaggaggaacttgttcacatttcacata
tacatgaactagaaattggaccaaaatatctgaatgatatagacagttta
gttcacccaagctatatttatttctaaatgtcagatatccatgttaaagt
tttgggaggtcctagttccctatagataaaatcccaaacaaaatctgttg
atcaatcaaacaagcaaactaggaaacaaacaaacaaacaaacaactaca
ggcaaatagggtcatccaattttagctttgatttaccttgggtgagtatc
cacatcctcctaatttactgtacataaaggaatcatttatctgaatgtct
gttcattaagattttttttaaagcagccaatatcatgatgaatgatctta
acgatgccccaaggctctccaggttttagaagttcattgaaaatcatcag
ggaaggacactactggagcccataaaattcctcttcctttggtacgactg
tagctttgtttctcagaaacaagaacatgatgagaatttcttatcatgaa
gaggtttagtatatcccaggagcatcaaacttagggccacactcagcctg
cttccaaagacttcaacgtatgtagtatagaatgtaagacaaatgagagc
tgaaacttggttccatatgctgtgtattgatcttataatgcatttccagc
tcttctggaagaaatcctgaaatacagcctttgctgtcacttggagatta
cagcacggatgaggaagaggatgaatttcttgacaagcaacatgtcatta
aactgccgtgggaaaagagggcttaaccgtttaactactcttccatttct
gtactcagaataaatcaaacaactgaatgattaatttgtgcagtattgag
agtatcaatgactctgatgtttctagctggtgactaataagaaaagtgat
gtaagctgaagtcttttcttcagacaccatattgcatgttaaaactcatc
tatattacagatacactgttaggggaaactatgttcaatgatttactagg
acggacaggtttgtgttaagctattgatgtttctactcgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-064D03.b_461_728 (reverse)

seq1  CTCCCACTTCTTGGCCCTG------------------------------G  20
      |||||||||||||||| ||                              |
seq2  CTCCCACTTCTTGGCCTTGACGGCCCCTGTACTGGGGCATATAAAGTTTG  50

seq1  CAAGACCCATGGGCCTCTC----------TTTCCACT--GACTTCTGATA  58
      ||||||| | |||| || |            || |||  | | |||  | 
seq2  CAAGACCAAGGGGCTTCGCACCCAATGAGGGTCAACTAGGCCATCTTCTG  100

seq1  CATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCATAATG  108
      |||| ||||||||||||| || ||| |||||||||| | |||||||| ||
seq2  CATATGCAGCTAGAGACAGGATCTCTGGGGGTACTGATAAGTTCATATTG  150

seq1  TTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCT  158
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCT-CTTGGGTACTTTCT  199

seq1  CTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGACTGTGA  208
      ||| |||||||||||||| ||||||| ||| ||||||||| ||| | |||
seq2  CTAGCTCCTCCATTGGGGGCCCTGTGTTCC-ATCCAATAGATGATTATGA  248

seq1  GCATCCACTTCTGTGTTTGC  228
      |||||||||||||| |||||
seq2  GCATCCACTTCTGTATTTGC  268

seq1: chr3_74841600_74842760
seq2: B6Ng01-064D03.g_69_1209 (reverse)

seq1  ATCGAGTAAGAAACATCAATTAGCTTAAACACAAACCTGTTCCGTCCTAT  50
      ||||||| ||||||||||| |||||| |||||||||||| ||||||||| 
seq2  ATCGAGT-AGAAACATCAA-TAGCTT-AACACAAACCTG-TCCGTCCTA-  45

seq1  GGTAAATTTCATTG-ACATAGTTTTCCCCTTTACCAGTGTAATCTGTAAT  99
       |||||  |||||| ||||||||| |||   || |||||| |||||||||
seq2  -GTAAA--TCATTGAACATAGTTTCCCC---TAACAGTGT-ATCTGTAAT  88

seq1  ATAGATGAGTTTTTAACATGCAATATGGTGTCTGGAAGAAAAGGACCTTC  149
      ||||||||| ||||||||||||||||||||||| |||||||||   ||||
seq2  ATAGATGAG-TTTTAACATGCAATATGGTGTCT-GAAGAAAAG--ACTTC  134

seq1  AGCTTTTAACATCACTTGTCTTATTAGTTCACAAGCTTAGAAACATCAGA  199
      |||||   ||||||||| ||||||||| |||| ||| |||||||||||||
seq2  AGCTT---ACATCACTTTTCTTATTAG-TCACCAGC-TAGAAACATCAGA  179

seq1  GTCATTGATACTCTCCAATACTTGCACAAATTAATCATTCAGTTGTTTGA  249
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  GTCATTGATACTCT-CAATAC-TGCACAAATTAATCATTCAGTTGTTTGA  227

seq1  TTTATTCTGAGTACAG-AATGGAAGAGTAG-TGAACGGTTAAGCCCTCTT  297
      |||||||||||||||| ||||||||||||| | |||||||||||||||||
seq2  TTTATTCTGAGTACAGAAATGGAAGAGTAGTTAAACGGTTAAGCCCTCTT  277

seq1  TTCCCACGGCAGTTTAATGACATGTTGCTTGTCAAGAAATTCATCCTCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACGGCAGTTTAATGACATGTTGCTTGTCAAGAAATTCATCCTCTT  327

seq1  CCTCATCCGTGCTGTAATCTCCAAGTGACAGCAAAGGCTGTATTTCAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCGTGCTGTAATCTCCAAGTGACAGCAAAGGCTGTATTTCAGGA  377

seq1  TTTCTTCCAGAAGAGCTGGAAATGCATTATAAGATCAATACACAGCATAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCAGAAGAGCTGGAAATGCATTATAAGATCAATACACAGCATAT  427

seq1  GGAACCAAGTTTCAGCTCTCATTTGTCTTACATTCTATACTACATACGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAAGTTTCAGCTCTCATTTGTCTTACATTCTATACTACATACGTT  477

seq1  GAAGTCTTTGGAAGCAGGCTGAGTGTGGCCCTAAGTTTGATGCTCCTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTGGAAGCAGGCTGAGTGTGGCCCTAAGTTTGATGCTCCTGGG  527

seq1  ATATACTAAACCTCTTCATGATAAGAAATTCTCATCATGTTCTTGTTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAAACCTCTTCATGATAAGAAATTCTCATCATGTTCTTGTTTCT  577

seq1  GAGAAACAAAGCTACAGTCGTACCAAAGGAAGAGGAATTTTATGGGCTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAAAGCTACAGTCGTACCAAAGGAAGAGGAATTTTATGGGCTCC  627

seq1  AGTAGTGTCCTTCCCTGATGATTTTCAATGAACTTCTAAAACCTGGAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTCCTTCCCTGATGATTTTCAATGAACTTCTAAAACCTGGAGAG  677

seq1  CCTTGGGGCATCGTTAAGATCATTCATCATGATATTGGCTGCTTTAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGCATCGTTAAGATCATTCATCATGATATTGGCTGCTTTAAAAA  727

seq1  AAATCTTAATGAACAGACATTCAGATAAATGATTCCTTTATGTACAGTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAATGAACAGACATTCAGATAAATGATTCCTTTATGTACAGTAA  777

seq1  ATTAGGAGGATGTGGATACTCACCCAAGGTAAATCAAAGCTAAAATTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGGATGTGGATACTCACCCAAGGTAAATCAAAGCTAAAATTGGA  827

seq1  TGACCCTATTTGCCTGTAGTTGTTTGTTTGTTTGTTTGTTTCCTAGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTATTTGCCTGTAGTTGTTTGTTTGTTTGTTTGTTTCCTAGTTTG  877

seq1  CTTGTTTGATTGATCAACAGATTTTGTTTGGGATTTTATCTATAGGGAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGATTGATCAACAGATTTTGTTTGGGATTTTATCTATAGGGAAC  927

seq1  TAGGACCTCCCAAAACTTTAACATGGATATCTGACATTTAGAAATAAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTCCCAAAACTTTAACATGGATATCTGACATTTAGAAATAAATA  977

seq1  TAGCTTGGGTGAACTAAACTGTCTATATCATTCAGATATTTTGGTCCAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGGTGAACTAAACTGTCTATATCATTCAGATATTTTGGTCCAAT  1027

seq1  TTCTAGTTCATGTATATGTGAAATGTGAACAAGTTCCTCCTGTGATGGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCATGTATATGTGAAATGTGAACAAGTTCCTCCTGTGATGGAC  1077

seq1  ATGACACTTTGATAGATTATTTTATCAAATCCAAACCAGCCTGAATCAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTTGATAGATTATTTTATCAAATCCAAACCAGCCTGAATCAGC  1127

seq1  AATTCCTAGAATTC  1161
      ||||||||||||||
seq2  AATTCCTAGAATTC  1141