BAC Information

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BAC

Clone NameB6Ng01-064E19
Chromosome3 (Build37)
Map Location 143,939,755 - 144,122,953
singlet/doubletdoublet
Overlap geneLOC545572, Hs2st1
Upstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
Downstream geneSep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064E19.bB6Ng01-064E19.g
ACCDH884127DH884128
length8651,029
definitionDH884127|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E19, 5' end.DH884128|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,939,755 - 143,940,526)(144,121,933 - 144,122,953)
sequence
gaattcaaatttcttccatcctggcatttttgcctaattataagcccatg
ccacagtaattcctcctgtgaccagggaatattaactttctagctgagcc
tttagtatgagaaaacccaaatttctagtcttagtttcactgcatattaa
ttttacaaacttaaagaacatgcccaaggttcctgggcctttaagtgact
cttcctcatacagttcttataaagactaaatggctggccttaggataaac
atagatgccaaccgacttatctttcatgaccaattgactttctacagggt
ttcaaggtgatgtaaccaggagagaattatcttttaacaagtagtgctga
gataaatgaatatcaacctttaaaaagtatgaaattagactttatatcat
atgcaattaactcaaaattgatcatagtcttaattataagaactaaacaa
taaatattttagaagaaaccataagaataaatctcaatgaccttggattt
agccatttcttagctatgacatcaaaggcatgtagcaaaagaaagactgg
acttcataaaaaccaaagagctttatgttttaaaggccactgtcaaaata
gaacagcaactgcagaatgggagaaggcaagcataaatcacacatctaat
atcagtttgtcttctgaatagaggaataatacttacaacccacaagagaa
agacaataaccaataacccaattcagagagctggaagaggatttgaatag
acatttctcaaagaatacattgatggtcaagaaaagaggcttagaacaag
cagtgctagggaaatgcaaatcaaagtcacaaggtaccatatcacaccca
caagggtagctaaaa
gaattctctcttttatctttgccagtgtccggtgctttcagcctcctcaa
aatcatctgatgctgttgggttttattgcccttcacctggcatgcaaggc
agagtctgtgaagtgtactggttcctgtgggccacatccccgtggcagaa
caccagaagaaaacaaaacatgcagggcaggagtgagaggccgaaaatga
cagatgcaggaactgactggacgggttagcggatggaagtgggctggaga
cagggagacagttaagaaagaagatgagcatttaccgtggttgagaggga
aagtggctcaatcgatattttaaaagggaagccttcagaaccgccattct
gaaaaggcttacttacagcatctccatggaaaccggctttgaggaagggt
gtatgagaggtctggccataaacgcactcctgcgtatcccaggtgctttc
cagaggagaaagtgaagccctgcgctgagacttcgtttactcacacttcc
tctgcgctggagagaagctaagccacagccccttttctttattgcagatt
ttctttctctttgcttctggtgacaggaacagctgttgttccctctgggt
gcactgtggtcacttcaggcctaaaacaacaggactgattgattataaac
taaagcttccaagttagaaggcagaataaacttcccccttggaaagtgac
tgagttatctgttaaggaatagaaagctgaccagaacacgtttgtataga
aaaagagatcctgtgtatctggaagagctcaaaagtaacagtctggggaa
ttaaaaagcagtaataatccaccagaatatgcctggacctgtaatgtaag
ttttagtaaagcctaagagtcctaccacaaatacctggacttggtcctct
tggtttcactatctccagtgactgaaaacggtgaaacaaagccccgatga
gtgctgaagtgtccttctggtggggctgcgggctggtgatcgtaggggat
cggaagcaaatttgtgatggaagggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143939755_143940526
seq2: B6Ng01-064E19.b_45_815

seq1  GAATTCAAATTTCTTCCATCCTGGCATTTTTGCCTAATTATAAGCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTCTTCCATCCTGGCATTTTTGCCTAATTATAAGCCCATG  50

seq1  CCACAGTAATTCCTCCTGTGACCAGGGAATATTAACTTTCTAGCTGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTAATTCCTCCTGTGACCAGGGAATATTAACTTTCTAGCTGAGCC  100

seq1  TTTAGTATGAGAAAACCCAAATTTCTAGTCTTAGTTTCACTGCATATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATGAGAAAACCCAAATTTCTAGTCTTAGTTTCACTGCATATTAA  150

seq1  TTTTACAAACTTAAAGAACATGCCCAAGGTTCCTGGGCCTTTAAGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAACTTAAAGAACATGCCCAAGGTTCCTGGGCCTTTAAGTGACT  200

seq1  CTTCCTCATACAGTTCTTATAAAGACTAAATGGCTGGCCTTAGGATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATACAGTTCTTATAAAGACTAAATGGCTGGCCTTAGGATAAAC  250

seq1  ATAGATGCCAACCGACTTATCTTTCATGACCAATTGACTTTCTACAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCCAACCGACTTATCTTTCATGACCAATTGACTTTCTACAGGGT  300

seq1  TTCAAGGTGATGTAACCAGGAGAGAATTATCTTTTAACAAGTAGTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGATGTAACCAGGAGAGAATTATCTTTTAACAAGTAGTGCTGA  350

seq1  GATAAATGAATATCAACCTTTAAAAAGTATGAAATTAGACTTTATATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGAATATCAACCTTTAAAAAGTATGAAATTAGACTTTATATCAT  400

seq1  ATGCAATTAACTCAAAATTGATCATAGTCTTAATTATAAGAACTAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTAACTCAAAATTGATCATAGTCTTAATTATAAGAACTAAACAA  450

seq1  TAAATATTTTAGAAGAAACCATAAGAATAAATCTCAATGACCTTGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTAGAAGAAACCATAAGAATAAATCTCAATGACCTTGGATTT  500

seq1  AGCCATTTCTTAGCTATGACATCAAAGGCATGTAGCAAAAGAAAGACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCTTAGCTATGACATCAAAGGCATGTAGCAAAAGAAAGACTGG  550

seq1  ACTTCATAAAAACCAAAGAGCTTTATGTTTTAAAGGCCACTGTCAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAAAAACCAAAGAGCTTTATGTTTTAAAGGCCACTGTCAAAATA  600

seq1  GAACAGCAACTGCAGAATGGGAGAAGGCAAGCATAAATCACACATCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAACTGCAGAATGGGAGAAGGCAAGCATAAATCACACATCTAAT  650

seq1  ATCAGTTTGTCTTCTGAATAGAGGAATAATACTTACAACCCAACAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCAGTTTGTCTTCTGAATAGAGGAATAATACTTACAACCC-ACAAGAGA  699

seq1  AAGACAATAACCAATAACCCAATTCAGAGAGCTGGAAGAGGATTTGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATAACCAATAACCCAATTCAGAGAGCTGGAAGAGGATTTGAATA  749

seq1  GACATTTCTCAAAGAATACATT  772
      ||||||||||||||||||||||
seq2  GACATTTCTCAAAGAATACATT  771

seq1: chr3_144121933_144122953
seq2: B6Ng01-064E19.g_69_1097 (reverse)

seq1  CCCATCCCTTCCATCACAACTTGGCTTCCGATCCCCTACGATCACCACGC  50
      |||| |||||||||||||| || ||||||||||||||||||||||||  |
seq2  CCCA-CCCTTCCATCACAAATTTGCTTCCGATCCCCTACGATCACCAGCC  49

seq1  CGCAGCCCCA-CAGACGGACACTTCAGCACTCATCGGGGC-TTGTTTCAC  98
      |||||||||| |||| |||||||||||||||||||||||| |||||||||
seq2  CGCAGCCCCACCAGAAGGACACTTCAGCACTCATCGGGGCTTTGTTTCAC  99

seq1  TGTTTTCAGTCACT-GAG-CAGTGAAACCAAGA-GACCAAGTCCAGGTAT  145
       ||||||||||||| |||  ||||||||||||| ||||||||||||||||
seq2  CGTTTTCAGTCACTGGAGATAGTGAAACCAAGAGGACCAAGTCCAGGTAT  149

seq1  CTGT-GTAGGACTC-TAAGCTTTACCTAAACTTACATTACA-GTTCAGGC  192
       ||| ||||||||| || |||||||  |||||||||||||| || |||||
seq2  TTGTGGTAGGACTCTTAGGCTTTACTAAAACTTACATTACAGGTCCAGGC  199

seq1  AATATCTGGTGGATTATTACTGCTTTTAAATTCCCCAGACTGTTACTTTT  242
      |   ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATTCTGGTGGATTATTACTGCTTTTTAATTCCCCAGACTGTTACTTTT  249

seq1  GAGCTCTTCCAGATACACAGGATCTCTTTTTCTATAC-AACGTGTTCTGG  291
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGCTCTTCCAGATACACAGGATCTCTTTTTCTATACAAACGTGTTCTGG  299

seq1  TCAGCTTTCTATTCCTTAACAGATAACTCAGTCACTTTCCAAGGGGGAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTCTATTCCTTAACAGATAACTCAGTCACTTTCCAAGGGGGAAG  349

seq1  TTTATTCTGCCTTCTAACTTGGAAGCTTTAGTTTATAATCAATCAGTCCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGCCTTCTAACTTGGAAGCTTTAGTTTATAATCAATCAGTCCT  399

seq1  GTTGTTTTAGGCCTGAAGTGACCACAGTGCACCCAGAGGGAACAACAGCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTAGGCCTGAAGTGACCACAGTGCACCCAGAGGGAACAACAGCT  449

seq1  GTTCCTGTCACCAGAAGCAAAGAGAAAGAAAATCTGCAATAAAGAAAAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCACCAGAAGCAAAGAGAAAGAAAATCTGCAATAAAGAAAAGG  499

seq1  GGCTGTGGCTTAGCTTCTCTCCAGCGCAGAGGAAGTGTGAGTAAACGAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGCTTAGCTTCTCTCCAGCGCAGAGGAAGTGTGAGTAAACGAAG  549

seq1  TCTCAGCGCAGGGCTTCACTTTCTCCTCTGGAAAGCACCTGGGATACGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCGCAGGGCTTCACTTTCTCCTCTGGAAAGCACCTGGGATACGCA  599

seq1  GGAGTGCGTTTATGGCCAGACCTCTCATACACCCTTCCTCAAAGCCGGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCGTTTATGGCCAGACCTCTCATACACCCTTCCTCAAAGCCGGTT  649

seq1  TCCATGGAGATGCTGTAAGTAAGCCTTTTCAGAATGGCGGTTCTGAAGGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAGATGCTGTAAGTAAGCCTTTTCAGAATGGCGGTTCTGAAGGC  699

seq1  TTCCCTTTTAAAATATCGATTGAGCCACTTTCCCTCTCAACCACGGTAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTAAAATATCGATTGAGCCACTTTCCCTCTCAACCACGGTAAA  749

seq1  TGCTCATCTTCTTTCTTAACTGTCTCCCTGTCTCCAGCCCACTTCCATCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCTTCTTTCTTAACTGTCTCCCTGTCTCCAGCCCACTTCCATCC  799

seq1  GCTAACCCGTCCAGTCAGTTCCTGCATCTGTCATTTTCGGCCTCTCACTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCCGTCCAGTCAGTTCCTGCATCTGTCATTTTCGGCCTCTCACTC  849

seq1  CTGCCCTGCATGTTTTGTTTTCTTCTGGTGTTCTGCCACGGGGATGTGGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGCATGTTTTGTTTTCTTCTGGTGTTCTGCCACGGGGATGTGGC  899

seq1  CCACAGGAACCAGTACACTTCACAGACTCTGCCTTGCATGCCAGGTGAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAACCAGTACACTTCACAGACTCTGCCTTGCATGCCAGGTGAAG  949

seq1  GGCAATAAAACCCAACAGCATCAGATGATTTTGAGGAGGCTGAAAGCACC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAAACCCAACAGCATCAGATGATTTTGAGGAGGCTGAAAGCACC  999

seq1  GGACACTGGCAAAGATAAAAGAGAGAATTC  1021
      ||||||||||||||||||||||||||||||
seq2  GGACACTGGCAAAGATAAAAGAGAGAATTC  1029