BAC Information

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BAC

Clone NameB6Ng01-064F09
Chromosome3 (Build37)
Map Location 51,289,146 - 51,347,512
singlet/doubletdoublet
Overlap geneRab33b, Setd7
Upstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1
Downstream geneLOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064F09.bB6Ng01-064F09.g
ACCDH884155DH884156
length400291
definitionDH884155|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F09, 5' end.DH884156|Mus musculus domesticus DNA, BAC clone: B6Ng01-064F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,289,146 - 51,289,551)(51,347,222 - 51,347,512)
sequence
ttttgagcattgcacagatgctaagtattgtgggagtaaaacctgttgcc
tttgaggcgttttctgtatgataaccaatttatctagggggaaaaaaatc
tgttttctcattgaggcatttatatgtgatggttcttaggtggtttgcca
acatcatatctcttgttgcaaaaacagaccctctcccaggtagctactga
gactttgtaatcatagtaggaagtctaaggcagccaggttgggattctga
agggttgggttcctcaactgcagaataatgatccttgacaagtcaggggc
ctcctgatgctgtaaacctcggcactgttgcgaaactactaagggttact
taatactactccttaaaacatatgagatggaggtgtgtgtgtgggggggg

agtcttagtgccttgaaaataagatgaccagttgcagaagctaggccata
cccgagtgactgaagacccctatgtttgagccattcaagggggtcagtga
gtgctgagggaagcgagggaccatcatgagatgagtgtaatagcagaaat
gccagtgcccggtgtaagctgcgatcctgcctggccatggagacacaggg
aggtgagacttgttctcagcccaacctgtggctttcttcttctctctttc
ctttggcagagaaaaaagtgtgtgtgtgtgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51289146_51289551
seq2: B6Ng01-064F09.b_49_454

seq1  GAATTCTTTTGAGCATTGCACAGATGCTAAGTATTGTGGGAGTAAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAGCATTGCACAGATGCTAAGTATTGTGGGAGTAAAACCT  50

seq1  GTTGCCTTTGAGGCGTTTTCTGTATGATAACCAATTTATCTAGGGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTTGAGGCGTTTTCTGTATGATAACCAATTTATCTAGGGGGAAA  100

seq1  AAAATCTGTTTTCTCATTGAGGCATTTATATGTGATGGTTCTTAGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTTTTCTCATTGAGGCATTTATATGTGATGGTTCTTAGGTGGT  150

seq1  TTGCCAACATCATATCTCTTGTTGCAAAAACAGACCCTCTCCCAGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAACATCATATCTCTTGTTGCAAAAACAGACCCTCTCCCAGGTAGC  200

seq1  TACTGAGACTTTGTAATCATAGTAGGAAGTCTAAGGCAGCCAGGTTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGACTTTGTAATCATAGTAGGAAGTCTAAGGCAGCCAGGTTGGGA  250

seq1  TTCTGAAGGGTTGGGTTCCTCAACTGCAGAATAATGATCCTTGACAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGGTTGGGTTCCTCAACTGCAGAATAATGATCCTTGACAAGTC  300

seq1  AGGGGCCTCCTGATGCTGTAAACCTCGGCACTGTTGCGAAACTACTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTCCTGATGCTGTAAACCTCGGCACTGTTGCGAAACTACTAAGG  350

seq1  GTTACTTAATACTACTCCTTAAAACATATGAGATGGAGGTGTGTGTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAATACTACTCCTTAAAACATATGAGATGGAGGTGTGTGTGTGG  400

seq1  GGGGGG  406
      ||||||
seq2  GGGGGG  406

seq1: chr3_51347222_51347512
seq2: B6Ng01-064F09.g_75_365 (reverse)

seq1  CCCCCCCCCCCCACACACACACACTTTTTTCTCTGCCAAAGGAAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCACACACACACACTTTTTTCTCTGCCAAAGGAAAGAGAG  50

seq1  AAGAAGAAAGCCACAGGTTGGGCTGAGAACAAGTCTCACCTCCCTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGCCACAGGTTGGGCTGAGAACAAGTCTCACCTCCCTGTGTC  100

seq1  TCCATGGCCAGGCAGGATCGCAGCTTACACCGGGCACTGGCATTTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCCAGGCAGGATCGCAGCTTACACCGGGCACTGGCATTTCTGCT  150

seq1  ATTACACTCATCTCATGATGGTCCCTCGCTTCCCTCAGCACTCACTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTCATCTCATGATGGTCCCTCGCTTCCCTCAGCACTCACTGACC  200

seq1  CCCTTGAATGGCTCAAACATAGGGGTCTTCAGTCACTCGGGTATGGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAATGGCTCAAACATAGGGGTCTTCAGTCACTCGGGTATGGCCTA  250

seq1  GCTTCTGCAACTGGTCATCTTATTTTCAAGGCACTAAGACT  291
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCAACTGGTCATCTTATTTTCAAGGCACTAAGACT  291