BAC Information

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BAC

Clone NameB6Ng01-064G01
Chromosome3 (Build37)3 (Build37)
Map Location 112,995,217 - 112,996,350113,038,396 - 113,039,220
singlet/doubletsingletsinglet
Overlap geneLOC668723
Upstream geneEG229746, LOC668717, Utp14B-ps, EG433643, OTTMUSG00000022462
Downstream geneAmy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064G01.bB6Ng01-064G01.g
ACCDH884181DH884182
length1,139899
definitionDH884181|Mus musculus domesticus DNA, BAC clone: B6Ng01-064G01, 5' end.DH884182|Mus musculus domesticus DNA, BAC clone: B6Ng01-064G01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,995,217 - 112,996,350)(113,038,396 - 113,039,220)
sequence
gaattctgtctcgcagctatttccaaagtattcactacttttaactgcct
cacccaccacccagatcagtgacctaggagaaacattaaggcccctgaaa
attctaatataactttaaagcatattattgaaatataatatttttagagt
tgtttaagatagctctgttatttgaaatgttactaatggttttctgtaaa
ccaaaattctgattttattcataaagtatatgccaaaatattgaaggaaa
tcatattataagctaaatagtaaaagggccactctttatcctaaaggatg
actgccataaagaaaaattcattagttcaaataaagtaacacttactgcc
ttctcaacattagaagcgcttataaactcaactgttacaagaaactcaga
ggtagaaatgtgtcatcctcagtgcacttcgagtgacattattgctgaat
aaaaggcttcatcactgagtcttagacatcttaaacatctaccaccctga
cagtatgagacaaaactcaaaatcagaaagattggcttgagactgaaagc
atcatgattattctgtcttataaaacattggtgtagcagggttcagactt
gatggtgacaaacacgtgtgacctggagatataaaggcagttttagacaa
actacataatttaaatacaaaattgttccctcaaggaagcagacctttca
tttttcaagaggtagattattatttttttattatttttgagattagactt
tgattacaatgtttctcctttcctttttggacctcaaaataattccctat
tctccttcaagtttatggcctttgtttcttatgtatttttattatatgaa
tatgcgtgtattatatttgagtgtgtgtgcataatatgtgtacttataca
tatatatgtatatgtgtatataacacatatttatgtactatgtatatcta
cacatgtgtatgtatatatacatatattcattcatttttcgtaatattaa
ctgaattagttcatatgaaaaatataaatatatattccaaggatggagga
tattgcctatgccatttgtaagtttcagttgttcacctgttgatacctga
cacaattaattgccgtggtccttccctcaaaattctccc
gaattctctttttatgatatccggtcagaaaaccagcctccttaatactg
tccataaccaaatttacttgtgtttcttctgagcatcaggtagaattgca
tctcctcagaagttagatgaaatgtgacttacatggctggtagaaagtaa
tctggcctttctgatcctccaaaagaggaaaattgaaaccaaaacaatga
agatttctgttgtttataaacactaactgtaggtttttatggttgctgat
ttatgcaagttggtgtggaaagttctttagaaatatatgtattttttaaa
atttcctccttttgtactctataagacttttaggtgcttttcagctattc
tatattcctcagttgaaaatttttgtttagctctataccccatttttaat
agggttattttcttctctggactctaacttcttgagttctttgtatatat
tggttattaaccctctattgaatgtaggattggtaaagaacttttccaat
ctgttggttgccattttatcgaattgacagtgtcctttgcacacagaagc
tatgcagttttctgaggtcctatttgttgattcttgatctaatagcataa
gccataggtgttctgttcaggaaaatttcccacatgcccacatgtttgag
gctcttccccactttcttctattgtaagtttcagtgtatctggttttatg
tggaggtccttttttttaaatatttttttattacgtattttcctcaatta
cttttctaatgctatcccaaaagtccaacacaccctcccccccacacttt
ccctacccgcccattcccattattttttggccctgcattcccctgtactg
gggcatataaagttttgtgtgtccaatgggactctctttgcagtgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112995217_112996350
seq2: B6Ng01-064G01.b_45_1183

seq1  GAATTCTGTCTCGCAGCTATTTCCAAAGTATTCACTACTTTTAACTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCGCAGCTATTTCCAAAGTATTCACTACTTTTAACTGCCT  50

seq1  CACCCACCACCCAGATCAGTGACCTAGGAGAAACATTAAGGCCCCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCACCCAGATCAGTGACCTAGGAGAAACATTAAGGCCCCTGAAA  100

seq1  ATTCTAATATAACTTTAAAGCATATTATTGAAATATAATATTTTTAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATATAACTTTAAAGCATATTATTGAAATATAATATTTTTAGAGT  150

seq1  TGTTTAAGATAGCTCTGTTATTTGAAATGTTACTAATGGTTTTCTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGATAGCTCTGTTATTTGAAATGTTACTAATGGTTTTCTGTAAA  200

seq1  CCAAAATTCTGATTTTATTCATAAAGTATATGCCAAAATATTGAAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTCTGATTTTATTCATAAAGTATATGCCAAAATATTGAAGGAAA  250

seq1  TCATATTATAAGCTAAATAGTAAAAGGGCCACTCTTTATCCTAAAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTATAAGCTAAATAGTAAAAGGGCCACTCTTTATCCTAAAGGATG  300

seq1  ACTGCCATAAAGAAAAATTCATTAGTTCAAATAAAGTAACACTTACTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATAAAGAAAAATTCATTAGTTCAAATAAAGTAACACTTACTGCC  350

seq1  TTCTCAACATTAGAAGCGCTTATAAACTCAACTGTTACAAGAAACTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACATTAGAAGCGCTTATAAACTCAACTGTTACAAGAAACTCAGA  400

seq1  GGTAGAAATGTGTCATCCTCAGTGCACTTCGAGTGACATTATTGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATGTGTCATCCTCAGTGCACTTCGAGTGACATTATTGCTGAAT  450

seq1  AAAAGGCTTCATCACTGAGTCTTAGACATCTTAAACATCTACCACCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTTCATCACTGAGTCTTAGACATCTTAAACATCTACCACCCTGA  500

seq1  CAGTATGAGACAAAACTCAAAATCAGAAAGATTGGCTTGAGACTGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGAGACAAAACTCAAAATCAGAAAGATTGGCTTGAGACTGAAAGC  550

seq1  ATCATGATTATTCTGTCTTATAAAACATTGGTGTAGCAGGGTTCAGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTATTCTGTCTTATAAAACATTGGTGTAGCAGGGTTCAGACTT  600

seq1  GATGGTGACAAACACGTGTGACCTGGAGATATAAAGGCAGTTTTAGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGACAAACACGTGTGACCTGGAGATATAAAGGCAGTTTTAGACAA  650

seq1  ACTACATAATTTAAATACAAAATTGTTCCCTCAAGGAAGCAGACCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAATTTAAATACAAAATTGTTCCCTCAAGGAAGCAGACCTTTCA  700

seq1  TTTTTCAAGAGGTAGATTATTATTTTTTTATTATTTTTGAGATTAGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGAGGTAGATTATTATTTTTTTATTATTTTTGAGATTAGACTT  750

seq1  TGATTACAATGTTTCTCCTTTCCTTTTTGGACCTCAAAATAATTCCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACAATGTTTCTCCTTTCCTTTTTGGACCTCAAAATAATTCCCTAT  800

seq1  TCTCCTTCAAGTTTATGGCCTTTGTTTCTTATGTATTTTTATTATATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAAGTTTATGGCCTTTGTTTCTTATGTATTTTTATTATATGAA  850

seq1  TATGCGTGTA-TATATTTGAGTGTGTGTGCAT-ATATGTGTACTTATACA  898
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TATGCGTGTATTATATTTGAGTGTGTGTGCATAATATGTGTACTTATACA  900

seq1  TATATATGTATATGTGTATATAACACATATTTATGTACTATGTATATCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATATGTGTATATAACACATATTTATGTACTATGTATATCTA  950

seq1  CACATGTGTATGTATATATACATATATATCAATCATTTTTCGTAAATATA  998
      ||||||||||||||||||||||||||| ||| |||||||||||||   ||
seq2  CACATGTGTATGTATATATACATATAT-TCATTCATTTTTCGTAATATTA  999

seq1  ACTGATATAGTTCATAATGATATATATATATATATATT-CAAAGATGGAG  1047
      |||||  |||||||| |||| | ||||| ||||||||| ||| |||||||
seq2  ACTGAATTAGTTCAT-ATGAAAAATATAAATATATATTCCAAGGATGGAG  1048

seq1  GATATTG-CTATG-CATATGTAAGTTTTCAG-TGTTCACTTGTTGATACC  1094
      ||||||| ||||| ||| |||||| |||||| ||||||| ||||||||||
seq2  GATATTGCCTATGCCATTTGTAAG-TTTCAGTTGTTCACCTGTTGATACC  1097

seq1  TG--ACAATTAATTGCTGT-GTTCTTCCCTCAGAAATACTCCC  1134
      ||  |||||||||||| || || ||||||||| |||| |||||
seq2  TGACACAATTAATTGCCGTGGTCCTTCCCTCA-AAATTCTCCC  1139

seq1: chr3_113038396_113039220
seq2: B6Ng01-064G01.g_68_893

seq1  GAATTCTCTTTTTATTATAACCGGTCAGAAAACCAGCCTTCTTAATACTG  50
      ||||||||||||||| ||| ||||||||||||||||||| ||||||||||
seq2  GAATTCTCTTTTTATGATATCCGGTCAGAAAACCAGCCTCCTTAATACTG  50

seq1  TCCACTACCAAATTTACTTGTGTTTCTTCTGAGCATAAGGTAGAATTGCA  100
      ||||  |||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCATAACCAAATTTACTTGTGTTTCTTCTGAGCATCAGGTAGAATTGCA  100

seq1  TCTCCTTAGAAGTTAGATGAAATGTGACTTACATGGCTGGTAGAAAGTAA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGAAGTTAGATGAAATGTGACTTACATGGCTGGTAGAAAGTAA  150

seq1  TCTGGCCTTTCTGATACTCCAAAAGAGGAAAATTGAAACCAAAACAAAGA  200
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  TCTGGCCTTTCTGATCCTCCAAAAGAGGAAAATTGAAACCAAAACAATGA  200

seq1  AGATTTCTGTTGTTTATAAACACTAACTGTAGGTTTTTATGATTGCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATTTCTGTTGTTTATAAACACTAACTGTAGGTTTTTATGGTTGCTGAT  250

seq1  TTATACAAGTTGGTGTGGAAAGTTCTTTAGAAATATATGTATTTTTAAAA  300
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTATGCAAGTTGGTGTGGAAAGTTCTTTAGAAATATATGTATTTTTTAAA  300

seq1  ATTTCCTCCTTTTGTACTCTATAAGACTTTTAGGTGCTTTTCAGCTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCTTTTGTACTCTATAAGACTTTTAGGTGCTTTTCAGCTATTC  350

seq1  TATATTCCTCAGTTGAAAATTTTTGTTTATCTCTATACCCCATTTTTAAT  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATATTCCTCAGTTGAAAATTTTTGTTTAGCTCTATACCCCATTTTTAAT  400

seq1  AGGGTTATTTGCTTCTCTGGACTCTAACTTCTTGAGTTCTTTGTATATAT  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATTTTCTTCTCTGGACTCTAACTTCTTGAGTTCTTTGTATATAT  450

seq1  TGGTTATTAACCCTCTATTGAATGTAGGATTGGTAAAGAACTTTTTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTTATTAACCCTCTATTGAATGTAGGATTGGTAAAGAACTTTTCCAAT  500

seq1  CTGTTGGTTGCCGTTTTATCGAATTGACAGTGTCCTTTGCACACAGAAGC  550
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTTGCCATTTTATCGAATTGACAGTGTCCTTTGCACACAGAAGC  550

seq1  TATGCAGTTTTCTGAGGTCCCATTTGTTGATTCTTGATCTAAGAGCATAA  600
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TATGCAGTTTTCTGAGGTCCTATTTGTTGATTCTTGATCTAATAGCATAA  600

seq1  GCCATAGGTGTTCTCTTCAGGAAATTTTCCCATGTGCCCACATTTTCGAG  650
      |||||||||||||| ||||||||| |||||||  ||||||||| || |||
seq2  GCCATAGGTGTTCTGTTCAGGAAAATTTCCCACATGCCCACATGTTTGAG  650

seq1  GCTCTTCCCCACTTTCTTCTATTGTAAGTTTCTGTGTATCTGGTTTTATG  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTCTTCCCCACTTTCTTCTATTGTAAGTTTCAGTGTATCTGGTTTTATG  700

seq1  TGGAGGTCC-TTTTTTTAAATATTTTTTTATTACATATTTTCCTCAATTA  749
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  TGGAGGTCCTTTTTTTTAAATATTTTTTTATTACGTATTTTCCTCAATTA  750

seq1  CATTTCCAATGCTATCCCAAAAGTCCAACACACCCTCCCCCCTCCCAC-T  798
      | |||| ||||||||||||||||||||||||||||||||||| | ||| |
seq2  CTTTTCTAATGCTATCCCAAAAGTCCAACACACCCTCCCCCC-CACACTT  799

seq1  TCCCTACCTGCCCATTCCCATTTTTTT  825
      |||||||| ||||||||||||| ||||
seq2  TCCCTACCCGCCCATTCCCATTATTTT  826