BAC Information

Click to search

BAC

Clone NameB6Ng01-064I17
Chromosome3 (Build37)
Map Location 75,298,953 - 75,429,865
singlet/doubletdoublet
Overlap genePdcd10, Serpini1
Upstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064I17.bB6Ng01-064I17.g
ACCDH884299DH884300
length1,1141,090
definitionDH884299|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I17, 5' end.DH884300|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,428,724 - 75,429,865)(75,298,953 - 75,300,062)
sequence
gaattctcattttgcatagaggtttgcttcagagagtggtattcaggatg
actagcactggtttggttgataattgacttcccaagaactgtagtgtata
agatgcaccctaccaacctggatcccttcttccctcaacccattttagta
tcagcacacacttactgtgttccagttctctctaataggtttgatcaaat
gactagacactttgcatacccatgattagaaattctctggaagataataa
ttattttctaaatctacaagctatcctaacaaacatttacggtttacacc
tctgtcatagaagaaagcaatgaaatattaccttatgaacctaaatatgt
ctaaaattataagtcacactgacctcagtgattgagttgccttagcagag
ctaacctctctgtggtaaaaggtgttatatttaggtaatatatctgcctg
aatgcttgggagacaatgaggaatcacggtaaagaaagcagaatgtaatt
atccagtgggaactcagccagtagagtaagataaatgttctaaatttaca
aggaaggcagcattaggattttatgctgtgcttcagctatgaatatgtcc
ctgactcaggtacaaagataccatgcaattgtttatatctccacaagtct
ggccctcctagctatgccaacgagatgcttacatctctaggaactgggac
atgaaccctgataacatttactaaaggaaaacagatttgtcttgtgtaga
catgtatctatactgtataaatagtaatctatacagtaagctcttagaga
atgttgttgctcagggtgtcaagcttcctgaatgagaagtagaagttaca
ttgccaaatatatcggaatatatgagctcattgtgagaggctgagtgatg
cttaaagaaattttggagggaaagtgtagatttttgactctatgatcatc
catctctctgtcttctgtctctcctggtcctcccggtgttctctgtcgtc
tctccctctctcttgtctctctgtctcccctcccaacagtacctttgtag
tgattccagtggaaattatttccgaatcgccgaggcgccaaagctgtgat
ctctgcgatggctt
gaattcagtgaggtgctatccaaggaagagtgcacagggactcctatact
acagttgcaaagttaggaaaggatgatacagagtgacattttccatacaa
cagaaatcaaagggtgataaggtagaaggaagatcaaaacagaaggaaga
agggttatacagaggaaatggtctttgttatgatataaaaatgacagttt
tcttgatagatagtgccagattcgagtttagaatgtaacttgaggctacg
cattggaaagactgaactggtcactgttttcccagcagttcaatcctagg
tagatttgaaaatgacccagacagttttgaaagatccactgtttaacccc
atcctagagaaattacataaaatctatctctgcgggtgtaattcagacat
gagcagtttttaaagcaccttaaatatttcttgtgtgcagccacaactcc
gactactaggttgaagggaacctggcctgatagtgagggataacaaagaa
gaagaggaaaggacgatgaaatagacactaactatgaccttatcctcact
actttactgtgtatgctcaaagaacaatgtattctcttttataaacaagc
actgtatctcagagctgtaccccctgttttggtttctgggggtatataat
tagaggaaagtattgagttctattttacaaccatcttcagtaaaaaatga
ttcaggaaaaatggttatcaatggatgaaggtttcttgggaaataaaata
tttgcaccatctcaaagtagctccccaacagtttgcttacaattacagga
gagaaagagcttcatattctaggagttaccgaagttaccaccaccaggcg
atgggctaaactggcattggtgtacattcaaatattgaatacatgaagat
acctaacatacaccctcataaacctgtaaaatgtatctgagaggaaaagg
gtaagcttaagctggggaggagtgctgcaaataatcgctttggacatgat
aggacgctccatcatgggctccagatatgtagtggtagcccctagcacca
agttcagcacaatggggaaacttacaaagcctaccctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75428724_75429865
seq2: B6Ng01-064I17.b_37_1150 (reverse)

seq1  AAGCCATCTGCATGAGATCACAGCTTCTGCGCCTCTGCTGAATTCTCGAA  50
      |||||||| ||| |||||||||||||  ||||||| ||   ||||  |||
seq2  AAGCCATC-GCA-GAGATCACAGCTTTGGCGCCTCGGC--GATTC-GGAA  45

seq1  ATATATTCTCCACTTTGGAATCACTTACATAGGTTACTGTTTGGGGGAAG  100
      ||| ||| |||||  ||||||||| |||| ||| ||||||| || |    
seq2  ATA-ATT-TCCAC--TGGAATCAC-TACAAAGG-TACTGTTGGGAG----  85

seq1  AGGGAGACAGAGAGACAAGAGAGAGGGAGAGACAGACAGAGAAACACAGG  150
       |||||||||||||||||||||||||||||||| ||||||| ||||| ||
seq2  -GGGAGACAGAGAGACAAGAGAGAGGGAGAGAC-GACAGAG-AACACCGG  132

seq1  GAGGACCAGGAGAGACAGGAAGACAGAGAAGGATGGATGAATCATAGAGT  200
      ||||||||||||||||| |||||||||||  |||||||| ||||||||| 
seq2  GAGGACCAGGAGAGACA-GAAGACAGAGA--GATGGATG-ATCATAGAG-  177

seq1  TCAAAAATCCTAACACTTTCCCTCCAAAAATTTTCTTTAAGCATCACTCA  250
      |||||||||   |||||||||||||||||  |||||||||||||||||||
seq2  TCAAAAATC--TACACTTTCCCTCCAAAA--TTTCTTTAAGCATCACTCA  223

seq1  GCCTCTCACAATGAGCTCATATATTTCCGATATATTTGGCAATGTAACTT  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCTCTCACAATGAGCTCATATA-TTCCGATATATTTGGCAATGTAACTT  272

seq1  CTACTTCTCATTCAGGAAGCTTGACACCCTGAGCAACAACATTCTCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTCATTCAGGAAGCTTGACACCCTGAGCAACAACATTCTCTAAG  322

seq1  AGCCTACTGTATAGATTACTATTTATACAGTATAGATACATGTCTACACA  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTGTATAGATTACTATTTATACAGTATAGATACATGTCTACACA  372

seq1  AGACAAATCTGTTTTCCTTTAGTAAATGTTATCAGGGTTCATGTCCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATCTGTTTTCCTTTAGTAAATGTTATCAGGGTTCATGTCCCAGT  422

seq1  TCCTAGAGATGTAAGCATCTCGTTGGCATAGCTAGGAGGGCCAGACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGATGTAAGCATCTCGTTGGCATAGCTAGGAGGGCCAGACTTGT  472

seq1  GGAGATATAAACAATTGCATGGTATCTTTGTACCTGAGTCAGGGACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATAAACAATTGCATGGTATCTTTGTACCTGAGTCAGGGACATAT  522

seq1  TCATAGCTGAAGCACAGCATAAAATCCTAATGCTGCCTTCCTTGTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTGAAGCACAGCATAAAATCCTAATGCTGCCTTCCTTGTAAATT  572

seq1  TAGAACATTTATCTTACTCTACTGGCTGAGTTCCCACTGGATAATTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTTATCTTACTCTACTGGCTGAGTTCCCACTGGATAATTACAT  622

seq1  TCTGCTTTCTTTACCGTGATTCCTCATTGTCTCCCAAGCATTCAGGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCTTTACCGTGATTCCTCATTGTCTCCCAAGCATTCAGGCAGA  672

seq1  TATATTACCTAAATATAACACCTTTTACCACAGAGAGGTTAGCTCTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACCTAAATATAACACCTTTTACCACAGAGAGGTTAGCTCTGCTA  722

seq1  AGGCAACTCAATCACTGAGGTCAGTGTGACTTATAATTTTAGACATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCAATCACTGAGGTCAGTGTGACTTATAATTTTAGACATATTT  772

seq1  AGGTTCATAAGGTAATATTTCATTGCTTTCTTCTATGACAGAGGTGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATAAGGTAATATTTCATTGCTTTCTTCTATGACAGAGGTGTAAA  822

seq1  CCGTAAATGTTTGTTAGGATAGCTTGTAGATTTAGAAAATAATTATTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAATGTTTGTTAGGATAGCTTGTAGATTTAGAAAATAATTATTATC  872

seq1  TTCCAGAGAATTTCTAATCATGGGTATGCAAAGTGTCTAGTCATTTGATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGAATTTCTAATCATGGGTATGCAAAGTGTCTAGTCATTTGATC  922

seq1  AAACCTATTAGAGAGAACTGGAACACAGTAAGTGTGTGCTGATACTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTAGAGAGAACTGGAACACAGTAAGTGTGTGCTGATACTAAAA  972

seq1  TGGGTTGAGGGAAGAAGGGATCCAGGTTGGTAGGGTGCATCTTATACACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGAGGGAAGAAGGGATCCAGGTTGGTAGGGTGCATCTTATACACT  1022

seq1  ACAGTTCTTGGGAAGTCAATTATCAACCAAACCAGTGCTAGTCATCCTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTTGGGAAGTCAATTATCAACCAAACCAGTGCTAGTCATCCTGA  1072

seq1  ATACCACTCTCTGAAGCAAACCTCTATGCAAAATGAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACTCTCTGAAGCAAACCTCTATGCAAAATGAGAATTC  1114

seq1: chr3_75298953_75300062
seq2: B6Ng01-064I17.g_67_1156

seq1  GAATTCAGTGAGGTGCTATCCAAGGAAGAGTGCACAGGGACTCCTATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGGTGCTATCCAAGGAAGAGTGCACAGGGACTCCTATACT  50

seq1  ACAGTTGCAAAGTTAGGAAAGGATGATACAGAGTGACATTTTCCATACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCAAAGTTAGGAAAGGATGATACAGAGTGACATTTTCCATACAA  100

seq1  CAGAAATCAAAGGGTGATAAGGTAGAAGGAAGATCAAAACAGAAGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCAAAGGGTGATAAGGTAGAAGGAAGATCAAAACAGAAGGAAGA  150

seq1  AGGGTTATACAGAGGAAATGGTCTTTGTTATGATATAAAAATGACAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATACAGAGGAAATGGTCTTTGTTATGATATAAAAATGACAGTTT  200

seq1  TCTTGATAGATAGTGCCAGATTCGAGTTTAGAATGTAACTTGAGGCTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAGATAGTGCCAGATTCGAGTTTAGAATGTAACTTGAGGCTACG  250

seq1  CATTGGAAAGACTGAACTGGTCACTGTTTTCCCAGCAGTTCAATCCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAAAGACTGAACTGGTCACTGTTTTCCCAGCAGTTCAATCCTAGG  300

seq1  TAGATTTGAAAATGACCCAGACAGTTTTGAAAGATCCACTGTTTAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGAAAATGACCCAGACAGTTTTGAAAGATCCACTGTTTAACCCC  350

seq1  ATCCTAGAGAAATTACATAAAATCTATCTCTGCGGGTGTAATTCAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGAGAAATTACATAAAATCTATCTCTGCGGGTGTAATTCAGACAT  400

seq1  GAGCAGTTTTTAAAGCACCTTAAATATTTCTTGTGTGCAGCCACAACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTTTTAAAGCACCTTAAATATTTCTTGTGTGCAGCCACAACTCC  450

seq1  GACTACTAGGTTGAAGGGAACCTGGCCTGATAGTGAGGGATAACAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTAGGTTGAAGGGAACCTGGCCTGATAGTGAGGGATAACAAAGAA  500

seq1  GAAGAGGAAAGGACGATGAAATAGACACTAACTATGACCTTATCCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAAGGACGATGAAATAGACACTAACTATGACCTTATCCTCACT  550

seq1  ACTTTACTGTGTATGCTCAAAGAACAATGTATTCTCTTTTATAAACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTGTGTATGCTCAAAGAACAATGTATTCTCTTTTATAAACAAGC  600

seq1  ACTGTATCTCAGAGCTGTACCCCCTGTTTTGGTTTCTGGGGGTATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCTCAGAGCTGTACCCCCTGTTTTGGTTTCTGGGGGTATATAAT  650

seq1  TAGAGGAAAGTATTGAGTTCTATTTTACAACCATCTTCAGTAAAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAAGTATTGAGTTCTATTTTACAACCATCTTCAGTAAAAAATGA  700

seq1  TTCAGGAAAAATGGTTATCAATGGATGAAGGTTTCTTGGGAAATAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAAAATGGTTATCAATGGATGAAGGTTTCTTGGGAAATAAAATA  750

seq1  TTTGCACCATCTCAAAGTAGCTCCCCAACAGTTTGCTTACAATTACAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGCACCATCTCAAAGTAGCTCCCCAACAGTTTGCTTACAATTACAGG-  799

seq1  AGAGAAAGAGCTTCATATTCTAGGAGTTACCGAAGGTAACACCACCA-GC  849
      ||||||||||||||||||||||||||||||||||| || |||||||| ||
seq2  AGAGAAAGAGCTTCATATTCTAGGAGTTACCGAAGTTACCACCACCAGGC  849

seq1  GATGGGCTAAACTGGCATT-GTGTACATTCAAATATGAAATACATGAAGA  898
      ||||||||||||||||||| ||||||||||||||||  ||||||||||||
seq2  GATGGGCTAAACTGGCATTGGTGTACATTCAAATATTGAATACATGAAGA  899

seq1  TACCTAACATTACACCCTCAATAAACCTGTAAAA-GTATCTGAGAAGGAA  947
      ||||||||| ||||||||| |||||||||||||| ||||||||| |||||
seq2  TACCTAACA-TACACCCTC-ATAAACCTGTAAAATGTATCTGAG-AGGAA  946

seq1  AAGGTGTAAGGCTTAGAGCTGGGGAGGAGTGCTGCAAAATAATCGCTTTG  997
      |||| |||| ||||| ||||||||||||||||||| ||||||||||||||
seq2  AAGG-GTAA-GCTTA-AGCTGGGGAGGAGTGCTGC-AAATAATCGCTTTG  992

seq1  GAGCATGATAGGACCGCTACACTCATGGGCTCACAG-TATGTAGTGTGTA  1046
      || |||||||||| |||| || |||||||||| ||| ||||||||| || 
seq2  GA-CATGATAGGA-CGCTCCA-TCATGGGCTC-CAGATATGTAGTG-GT-  1036

seq1  AGCCCCACAAGCCAGCCAAAGTTCAGCACAAATGGGGAGAAGCTTACAAA  1096
      |||||  | |||    | ||||||||||| ||||||  ||| ||||||||
seq2  AGCCC--CTAGC---ACCAAGTTCAGCAC-AATGGG--GAAACTTACAAA  1078

seq1  GCCCTACCTCTGCT  1110
      | |||||| |||||
seq2  G-CCTACC-CTGCT  1090