BAC Information

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BAC

Clone NameB6Ng01-064J19
Chromosome3 (Build37)
Map Location 117,011,588 - 117,166,846
singlet/doubletdoublet
Overlap geneD3Bwg0562e
Upstream geneCdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J19.bB6Ng01-064J19.g
ACCDH884345DH884346
length1,1671,077
definitionDH884345|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J19, 5' end.DH884346|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,011,588 - 117,012,800)(117,165,731 - 117,166,846)
sequence
gaattcctagttcttctgagggctgaagtagaaaggacttaaatctttct
ctttggattggagatgaccattttctttctgtgttttccacatcatcatc
ccctgagatatatctgtgtccaaatttttcatcattaaactgtactaggc
ctctctgtaactcatgtaaatttactgtctttgcaaaaactgtctccaca
tattgtcatattctgaaggttaagtcctcagcatgtgacccttgaagaca
caaaattcatttcataagagctgttaccaaaatagcaaacaacacaatat
acggtcaggatgctgtggttaaaatacatttttggggggtttaaaacagc
aaggttgtgaacacataggggcttgcagctgagtatgagatagctaaact
aagaaagaggaagggcagagccctgagcatacacagaaggtcttggcagg
ctctagcctgctgctgtgtaatcttcccctactgcaacccaggaacatgt
gcaaggcactgttatccaaccccccagtaaaatctcaactttatgggttg
tacctttatacacattcttgaaaccaattgcaacaatgaattatgtgtga
gattggcttccaataaggcttctgcctattccaggaaggaattcacccca
aaaggcttcaaaggttggcaaagagtggagaaatgctggcccaagacttc
tacatcaagtcccagggacagtttcttgctgttgctgctaggctcggtgg
gcacttcactctgttgcatgtccttcctttccacttcccctttctcatct
actgaaacatctactggttcacccactacctgcgcctcagtttgagtctt
ctcctttagtgtatgagccaccacttctgcagttggggttgaagggggtt
cagaggatcttctctcttcattcatatcaagcagagtgggaaacccgtca
tctctctccaagtggggctactagaaatgctgctcttcttcctccactat
ctggagatacagcagcaatcacaatactcaggtcaccgttagttcttgtt
tttattttttaaagactaagcgattgccgcattgggtgcactgggcgtcc
ttggctctggactgtcaacagttcacctcgtgaacctactcttcagttaa
tcttgcagaaatatcct
gaattcaaataattaatttaaatcacacggcatcagaaaacagtgttcct
tcttttcgtgaagtatctatttattacttaaacaaaatgttttatttttc
ttgaaagcctttaagatgaacatgtggaaggcctggtgacaaggtcacca
gtatattgtagtttcctattgactcatggatatgaggaacagtaataagt
tattcaacaaatatttttggaaaatgatttcatttcagatcctaagaagg
ctgtggcaaacaatattgccatagatcttcatgaaagttgataaataatg
aggaagacattgttgaaaatgaagcctccatttctctacctctttctctc
ttttttttttcttgatctcttgcttacttactatctaaatgctgaatatt
gagcatagtccagacattgtgagtacatgccctaccattgagctacaccc
ctggctgggtacattaaaaatctaagagtttgccgggcgtggtggcacat
gcttttaatcccagcactcgggaggcagaggcaggcggatttctgagtcc
gaggccaacctggtctacaaagtgagtcccaggacagccagggctataca
gagaaaccctgtctcgaaaaaagaaaaatctaatagtttaatttgagcat
ccagtaattcatgagttgggcagcttcagacttcaagtagttttgtgttc
cactgggaagagcaataagagaggttttgttttgtttttttaaaatgaaa
ttccatatacagattgtcttagggttctattcctgcacaacctcatggct
aagaagcaagttggggaggaaagggtttatttggcttacacttcctacat
tgctggtcatcaccaaagagacaggactggactcagcagtcagaagcagg
agtgatgcagaggcatggaggatgtcttactggctgctgcttccactggc
tgctcagctgctctcttataaacccagactacccgcaggaatgcacacca
caatgggcctttccccttgatcacattgaaaatgcttacagtcgactcat
ggaagcactcctcactgaagctttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117011588_117012800
seq2: B6Ng01-064J19.b_48_1214

seq1  GAATTCCTAGTTCTTCTGAGGGCTGAAGTAGAAAGGACTTAAATCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTTCTTCTGAGGGCTGAAGTAGAAAGGACTTAAATCTTTCT  50

seq1  CTTTGGATTGGAGATGACCATTTTCTTTCTGTGTTTTCCACATCATCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGGAGATGACCATTTTCTTTCTGTGTTTTCCACATCATCATC  100

seq1  CCCTGAGATATATCTGTGTCCAAATTTTTCATCATTAAACTGTACTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGATATATCTGTGTCCAAATTTTTCATCATTAAACTGTACTAGGC  150

seq1  CTCTCTGTAACTCATGTAAATTTACTGTCTTTGCAAAAACTGTCTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTAACTCATGTAAATTTACTGTCTTTGCAAAAACTGTCTCCACA  200

seq1  TATTGTCATATTCTGAAGGTTAAGTCCTCAGCATGTGACCCTTGAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCATATTCTGAAGGTTAAGTCCTCAGCATGTGACCCTTGAAGACA  250

seq1  CAAAATTCATTTCATAAGAGCTGTTACCAAAATAGCAAACAACACAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCATTTCATAAGAGCTGTTACCAAAATAGCAAACAACACAATAT  300

seq1  ACGGTCAGGATGCTGTGGTTAAAATACATTTTTGGGGGGTTTAAAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCAGGATGCTGTGGTTAAAATACATTTTTGGGGGGTTTAAAACAGC  350

seq1  AAGGTTGTGAACACATAGGGGCTTGCAGCTGAGTATGAGATAGCTAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGTGAACACATAGGGGCTTGCAGCTGAGTATGAGATAGCTAAACT  400

seq1  AAGAAAGAGGAAGGGCAGAGCCCTGAGCATACACAGAAGGTCTTGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGGAAGGGCAGAGCCCTGAGCATACACAGAAGGTCTTGGCAGG  450

seq1  CTCTAGCCTGCTGCTGTGTAATCTTCCCCTACTGCAACCCAGGAACATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCTGCTGCTGTGTAATCTTCCCCTACTGCAACCCAGGAACATGT  500

seq1  GCAAGGCACTGTTATCCAACCCCCCAGTAAAATCTCAACTTTATGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCACTGTTATCCAACCCCCCAGTAAAATCTCAACTTTATGGGTTG  550

seq1  TACCTTTATACACATTCTTGAAACCAATTGCAACAATGAATTATGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTATACACATTCTTGAAACCAATTGCAACAATGAATTATGTGTGA  600

seq1  GATTGGCTTCCAATAAGGCTTCTGCCTATTCCAGGAAGGAATTCACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTTCCAATAAGGCTTCTGCCTATTCCAGGAAGGAATTCACCCCA  650

seq1  AAAGGCTTCAAAGGTTGGCAAAGAGTGGAGAAATGCTGGCCCAAGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTCAAAGGTTGGCAAAGAGTGGAGAAATGCTGGCCCAAGACTTC  700

seq1  TACATCAAGTCCCAGGGACAGTTTCTTGCTGTTGCTGCTAGGCTCGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAGTCCCAGGGACAGTTTCTTGCTGTTGCTGCTAGGCTCGGTGG  750

seq1  GCACTTCACTCTGTTGCATGTCCTTCCTTTCCACTTCCCCTTTCTCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCACTCTGTTGCATGTCCTTCCTTTCCACTTCCCCTTTCTCATCT  800

seq1  ACTGAAACATCTACTGGTTCACCCACTACCTGCGCCTCAGTTTGAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACATCTACTGGTTCACCCACTACCTGCGCCTCAGTTTGAGTCTT  850

seq1  CTCCTTTAGTGTATGAGCCACCACTTCTGCAGTTGGGGTTGAAGGGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGTGTATGAGCCACCACTTCTGCAGTTGGGGTTGAAGGGGGTT  900

seq1  CAAGAGGAATCTTCTCTCTTCATTCATATCAAGGCAGAGTGGGAAAACCC  950
      | ||||| |||||||||||||||||||||||| |||||||||| ||||||
seq2  C-AGAGG-ATCTTCTCTCTTCATTCATATCAA-GCAGAGTGGG-AAACCC  946

seq1  GTTCATCTCTCTCCCAAGGTGGGGGCTTACTAGATATGCTGCTCTTCTTC  1000
      | ||||||||||||  | ||||||   ||||||| |||||||||||||||
seq2  G-TCATCTCTCTCC--AAGTGGGG--CTACTAGAAATGCTGCTCTTCTTC  991

seq1  CTCCACTATCTGGAGATAACAGCAGCCATTCAACAATACTCAAGTTCACC  1050
      ||||||||||||||||| |||||||| ||   ||||||||| || |||||
seq2  CTCCACTATCTGGAGAT-ACAGCAGCAAT--CACAATACTC-AGGTCACC  1037

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAG-CATAGCGATT  1099
                   ||  || || ||||| ||||||| || |  ||||| |
seq2  ------------GTTAGTTCTTGTTTTTATTTTTTAAAGACTAAGCGA-T  1074

seq1  TGCCGCAATATGGCTGCCACTGTGCTGTCCTCTGGCTCCTGGACTGCTAA  1149
      |||||||   ||| || ||||| || ||||| ||||| ||||||||  ||
seq2  TGCCGCA--TTGGGTG-CACTGGGC-GTCCT-TGGCT-CTGGACTGTCAA  1118

seq1  CACTGTTCACACTCCTGTAACTCATCTCTTCAGTTAAATCTTGCATAGAT  1199
      ||  |||||| ||| || | ||   |||||||||| ||||||||| | ||
seq2  CA--GTTCAC-CTCGTGAACCT--ACTCTTCAGTT-AATCTTGCAGAAAT  1162

seq1  ATCATTCATATCCT  1213
      ||| |         
seq2  ATCCT---------  1167

seq1: chr3_117165731_117166846
seq2: B6Ng01-064J19.g_69_1145 (reverse)

seq1  GAGAAAGGAGCTTCAGGTGAGGAAGTGCCTCCATGAGATCCAGCTGTAAG  50
      |||||   ||||||| |||||| ||||| |||||||| || | |||||| 
seq2  GAGAA---AGCTTCA-GTGAGG-AGTGCTTCCATGAG-TCGA-CTGTAA-  42

seq1  GCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCATTGTGGGTGGTGC  100
      ||||||  |||||  |||||||| |||||||||||||||||||   ||| 
seq2  GCATTT--TCAAT--GTGATCAA-GGGGAAAGGCCCATTGTGG--TGTG-  84

seq1  CATCCCTGGGCGGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAG  150
      ||| |||  |||||||||| |||||| |||||||||||| ||||||| ||
seq2  CATTCCT--GCGGGTAGTC-TGGGTT-TATAAGAGAGCA-GCTGAGC-AG  128

seq1  CCAGTGGAAGCAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCA  200
      ||||||||||| ||| |||||||||   |||| ||||||| |||||||||
seq2  CCAGTGGAAGC-AGC-AGCCAGTAA--GACAT-CCTCCAT-GCCTCTGCA  172

seq1  TCAACTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGTCTTCCTTTGG  250
      || |||||||||| |||| |||| |||| |||||||||||||  ||||||
seq2  TC-ACTCCTGCTT-CTGA-CTGC-TGAG-TCCAGTCCTGTCT--CTTTGG  215

seq1  TGATGAACAGCAATGTAGGAAGTGTAAGCCAAATAAACCCTTTCCTCCCC  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCAGCAATGTAGGAAGTGTAAGCCAAATAAACCCTTTCCTCCCC  265

seq1  AACTTGCTTCTTAGCCATGAGGTTTGTGCAGGAATAGAAACCCTAAGACA  350
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  AACTTGCTTCTTAGCCATGAGG-TTGTGCAGGAATAG-AACCCTAAGACA  313

seq1  ATCTGTATATGGAAATTTCATTTTAAAAAAACAAAACAAAACCTCTCTTT  400
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATCTGTATATGG-AATTTCATTTTAAAAAAACAAAACAAAACCTCTC-TT  361

seq1  ATTGCTCTTCCCAGTGGAACACAAAACTACTTGAAGTCTGAAGCTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTCCCAGTGGAACACAAAACTACTTGAAGTCTGAAGCTGCCCA  411

seq1  ACTCATGAATTACTGGATGCTCAAATTAAACTATTAGATTTTTCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAATTACTGGATGCTCAAATTAAACTATTAGATTTTTCTTTTTT  461

seq1  CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGGACTCACTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGGACTCACTTTGT  511

seq1  AGACCAGGTTGGCCTCGGACTCAGAAATCCGCCTGCCTCTGCCTCCCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTTGGCCTCGGACTCAGAAATCCGCCTGCCTCTGCCTCCCGAG  561

seq1  TGCTGGGATTAAAAGCATGTGCCACCACGCCCGGCAAACTCTTAGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAAGCATGTGCCACCACGCCCGGCAAACTCTTAGATTTT  611

seq1  TAATGTACCCAGCCAGGGGTGTAGCTCAATGGTAGGGCATGTACTCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACCCAGCCAGGGGTGTAGCTCAATGGTAGGGCATGTACTCACAA  661

seq1  TGTCTGGACTATGCTCAATATTCAGCATTTAGATAGTAAGTAAGCAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGACTATGCTCAATATTCAGCATTTAGATAGTAAGTAAGCAAGAG  711

seq1  ATCAAGAAAAAAAAAAGAGAGAAAGAGGTAGAGAAATGGAGGCTTCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAAAAAAAAGAGAGAAAGAGGTAGAGAAATGGAGGCTTCATTT  761

seq1  TCAACAATGTCTTCCTCATTATTTATCAACTTTCATGAAGATCTATGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATGTCTTCCTCATTATTTATCAACTTTCATGAAGATCTATGGCA  811

seq1  ATATTGTTTGCCACAGCCTTCTTAGGATCTGAAATGAAATCATTTTCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTTGCCACAGCCTTCTTAGGATCTGAAATGAAATCATTTTCCAA  861

seq1  AAATATTTGTTGAATAACTTATTACTGTTCCTCATATCCATGAGTCAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTTGAATAACTTATTACTGTTCCTCATATCCATGAGTCAATA  911

seq1  GGAAACTACAATATACTGGTGACCTTGTCACCAGGCCTTCCACATGTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTACAATATACTGGTGACCTTGTCACCAGGCCTTCCACATGTTCA  961

seq1  TCTTAAAGGCTTTCAAGAAAAATAAAACATTTTGTTTAAGTAATAAATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGGCTTTCAAGAAAAATAAAACATTTTGTTTAAGTAATAAATAG  1011

seq1  ATACTTCACGAAAAGAAGGAACACTGTTTTCTGATGCCGTGTGATTTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCACGAAAAGAAGGAACACTGTTTTCTGATGCCGTGTGATTTAAA  1061

seq1  TTAATTATTTGAATTC  1116
      ||||||||||||||||
seq2  TTAATTATTTGAATTC  1077