BAC Information

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BAC

Clone NameB6Ng01-064J24
Chromosome3 (Build37)12 (Build37)
Map Location 41,059,110 - 41,059,7379,442,261 - 9,442,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J24.bB6Ng01-064J24.g
ACCDH884353DH884354
length936857
definitionDH884353|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J24, 5' end.DH884354|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,110 - 41,059,737)(9,442,261 - 9,442,845)
sequence
gaattctttgttcagctctgagccccacctttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatccgatttgggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgatggtgtcttttgccttacagaagctttgcaatttt
atgaggtcccatttatcgattcttgatcttacagcacaagccattgctgt
tctgttcaggaatttttcccctgtacccatatcttcgaggcctttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagatagaaatggatcaattcg
cattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtggattcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcactataccagtaccatgcagttttgatcacaattg
ctctgtagtacagttttaggtccggcatggtttgctcatgtgtactgaga
acctctgaaaacagaaatcaaagcaagcttttacccctttgaattgtttg
ttcattggttggattcatagcaacacaaaaataactaaagcatccagcta
ccctaaagtggattattacataaccccaatgtatacatgaatcaaacaat
cacattataccccataaaaccctgacatgattaagtttcttctgatggga
aaaacacattatctaaagaagaaagacaaattcgaaaaacagaccattca
attgctaaagaagctgataaaaagagctgataatct
gaattctttgttcagctctgagccccatttttaatagggttatttgattt
tttggagcccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggattggtaaaggtccttttccaatctgttggtggtctt
tttgtcttgttgacggtgttttttgccttgcagaagctttgcaactttat
gaggtcccatttatcgattctcgatcttactgcccaagccattgttgttc
tattcaggaacttttctcctgtacccgtatcttcgagtcttttccacact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaatttgca
ttcttctacatgctaaccaccagttgtgccagtaccatttgttgaaaatg
ctgtctttttttccagtggatggtttttgctccctcgtcaaagatcaagt
gaccataggtgtgtgggttcatttctaggtcttcaattctgttccattgg
tctacttgtctgtcgcatgcagtaccatgcagttttttatcacaattgct
ctggtacaatttaggtcaagcatggtgattccaccagaggttcttttatc
ctttgagaagagtttttgctatcctaggtttttgttattccagatgaatt
gccgattgtcttttctaattcgttgaagaattgagttggattttgatggg
gattgaattgaatctcttctttatcttaaacctttaaatgttattatttg
tcctccaaaaagcatcacattaactaagggataaaagcttagcttagtgc
ttaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059110_41059737
seq2: B6Ng01-064J24.b_47_676 (reverse)

seq1  ACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGC  50
      |||||||| |||||||| || |||||||||||||||||||| ||||||||
seq2  ACCATGCCGGACCTAAAACTGTACTACAGAGCAATTGTGATCAAAACTGC  50

seq1  ATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAG  100
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  ATGGTACTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTGAAG  100

seq1  ACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGA  150
      || |||| | |||||||||||||||||||||||||||||| |||||||||
seq2  ACCCAGAGATGAATCCACACACCTATGGTCACTTGATCTTTGACAAGGGA  150

seq1  GCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTG  200

seq1  GCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTAT  250
      ||||||||||  ||||||||||||||||||||||||||||||| | ||||
seq2  GCACAACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTCTAT  250

seq1  CTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAA  300
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAA  300

seq1  CCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGA  350
      |||||||||||||||||||||||||||||||| |||||| |||| |||||
seq2  CCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAGGCCTCGAAGA  350

seq1  TATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTG  400
      |||||  |||||||||||||||||| | ||||||||||||||||||||||
seq2  TATGGGTACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTG  400

seq1  TAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGC  450
      ||||||  ||||| || |||||||||||||| ||| ||||||||||||| 
seq2  TAAGATCAAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGT  450

seq1  AAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGA  499
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  AAGGCAAAAGACACCATCAATAAGACAAAAAGGCCACCAACAGATTGGGA  500

seq1  AAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATAT  549
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  AAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATATAT  550

seq1  ATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAA  599
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAA  600

seq1  AA-ATGGGGCTCAGAGCTAAACAAAGAATT  628
      ||  |||||||||||||| |||||||||||
seq2  AAGGTGGGGCTCAGAGCTGAACAAAGAATT  630

seq1: chr12_9442261_9442845
seq2: B6Ng01-064J24.g_343_925

seq1  CCGTATCTTCGAGTCTTTTCCACACTTTCTCCTCTATAAGTTTCAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATCTTCGAGTCTTTTCCACACTTTCTCCTCTATAAGTTTCAGTGTC  50

seq1  TCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACA  100

seq1  AGGAGATAGGAATGGATCAATTTGCATTCTTCTACATGCTAACCACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGGAATGGATCAATTTGCATTCTTCTACATGCTAACCACCAGT  150

seq1  TGTGCCAGTACCATTTGTTGAAAATGCTGTCTTTTTTTCCAGTGGATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGTACCATTTGTTGAAAATGCTGTCTTTTTTTCCAGTGGATGGT  200

seq1  TTTTGCTCCCTCGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCCCTCGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTT  250

seq1  CTAGGTCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCATGCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCGCATGCAGTA  300

seq1  CCATGCAG-TTTTTATCACAATTGCTCTGGTACAATTTAGGTCAAGCATG  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGTTTTTTATCACAATTGCTCTGGTACAATTTAGGTCAAGCATG  350

seq1  GTGATTCCACCAGAGGTTCTTTTATCC-TTGAGAAGAGTTTTTGCTATCC  398
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGATTCCACCAGAGGTTCTTTTATCCTTTGAGAAGAGTTTTTGCTATCC  400

seq1  TAGGTTTTTTGTTATTCCAGATGAATTTGCCGATTGTCCTTTCTAATTCG  448
      |||| |||||||||||||||||||| |||||||||||| |||||||||||
seq2  TAGG-TTTTTGTTATTCCAGATGAA-TTGCCGATTGTCTTTTCTAATTCG  448

seq1  TTGAAGAATTGAGTTGGAATTTTGATGGGGATTGAATTGAATCTCTCCTT  498
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  TTGAAGAATTGAGTTGG-ATTTTGATGGGGATTGAATTGAATCTCTTCTT  497

seq1  ATTCTTAAACC-TTAAATGTTACTAATTTGTCCCTCCAAAAAGCATCACA  547
        ||||||||| |||||||||| | |||||| ||||||||||||||||||
seq2  TATCTTAAACCTTTAAATGTTA-TTATTTGT-CCTCCAAAAAGCATCACA  545

seq1  TTAACTAAGGGATAAAAGCATAGCTCAGTGCTTAATGG  585
      ||||||||||||||||||| ||||| ||||||||||||
seq2  TTAACTAAGGGATAAAAGCTTAGCTTAGTGCTTAATGG  583