BAC Information

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BAC

Clone NameB6Ng01-064K23
Chromosome3 (Build37)
Map Location 96,374,481 - 96,375,493
singlet/doubletsinglet
Overlap genenone
Upstream geneHormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip
Downstream genePolr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064K23.bB6Ng01-064K23.g
ACCDH884395DH884396
length1,212999
definitionDH884395|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K23, 5' end.DH884396|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgttgcctattaagtgacattcagaattgcctctggcattag
actatcacttagaataaaagccaagtcgctcccatatacaggaatttaca
atggtttaggaagtagatcgggctgtggttttagagtactgcattattta
tgagaaggttagctagagcggaactccctaattagagccatgacttgggt
gtgaaagcccttgccctggagtgtaaagacctcacacctggcttctaaga
atatagctgacctagttagagctgactttgtctcagttgttttattgccc
agttcctgccagtctttgtgtttacattcctctgttctgtgtaagagtca
ttaagcatccagtaacctcatttgtaccttgctgatgtgtcacctaactt
ccctattttcttctgtataaaacatttgatgctcaatttgacaaattaca
ttcagattctacacaatctcgagtgttggtctgtctgtcactcgccaact
ccttgcccatctgcacccagagacccattccacgcagacaaagggaccca
gagggtctgaggcaacatacctttaatctagaccataccttgtgctggag
gcctacataaggacaatggaaaagggaagtgttcactctttgtctgcttg
cacttacttgccagcacatctgttggaacctacctcttcaggagtccagc
gtatgcagaagcccagctgaaacacctggcctcatgggactgcggattct
tgagcttcccattcacagctgcccattgttgggttagttggactgcagac
tggaagtcgttccaataatttcccttaatatatagtcattccgtaagttc
tgtgactctagagaatcctgattaacacaacagccaagggctggagagat
ggcttactgtgtagagctcttgttcttataggggacgtgggtttgattct
cagcacccacaaggtcgctcacaaccatttgtaattccagttcaggagat
tgtgtctaggtcattgttctattgctgtgagagacaccatgaccaggcaa
cttcttataaaggaggcattaattgaggcttgcttacatttgccaaagct
tgtctattgtccatctcacagcagacactggactggagcagtagctgaag
tttatctctctgtatcaagggaattggggtacacactcagacaaggggaa
cctctctcctga
gaattcctaccccccttggattttggggtgtggtgtaaatgcaagcacat
ttgtgctatggtgtgcacgtggagctcaggggacaactgtgcactctgtt
gactcctcccatcttttcctgggttacagggattgaactcatggcaccag
actcaggtggcaagtgcttttacttctaaattgtctcaccttttttcctt
cctccctccctccctcccttcctccctcccttcctcccttcctctctcct
cctcctctccttcttcttcctctctctccctctctctctttcctctttcc
tttcttgcttctttctttcttcctctctctctctttcttccaacagtgtc
tgggagcagcctgttacagtatcaattttgtcctggtaactgttaaccct
cctgcctcaggcttccaaatgctgggatttcaggaatgcaatgccacaca
ggccctaaaatgtggtactatagcttctaaatgttcccagccaattcaga
ctctgaggaagaaatagtacaggcttctaaacatcggcaagtggctttgg
cgtgtgttctgcctcgggcttagcatttcctctgttgtgccctgttttgt
caacgtcagctaaagtcagcatacaagaagagacccgagaaccatagcac
agttaagctgggggctctatggcaagccaaagatccgtcttcccagccct
cgggcttcctgtgctgaggactccttcctttgccacaaaacaggatataa
agtatcagaagaggtgctgagacacagaaagagacaagggagaggagggt
gaagtctttggtctggtggtttaaaagaaggccagatgcagggtagtggt
ggcacatgcctgtaatcacagcacttggaagcagaggctgtgtctctgag
tccaggccagcctgtctttaagtgagttccaggacaggcaggcctaccag
gagaacctgtctcatccacccatcccacaaaggaaaaaaggggtagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96374481_96375493
seq2: B6Ng01-064K23.g_68_1066 (reverse)

seq1  CCCCTACCCCTTTTTTTTTCCTTTGGTGTGTATGTGTGTGCTGAGACAGG  50
      ||||||||||   ||||||||||| ||| | ||| ||| | |||||||||
seq2  CCCCTACCCC---TTTTTTCCTTT-GTG-GGATGGGTG-GATGAGACAGG  44

seq1  GTTCCTCCTGGGTAGGCCTGCCTGTCCTGGAACTCACTCTATAGACCAGG  100
        | ||||| |||||||||||||||||||||||||||| || ||| ||||
seq2  --TTCTCCT-GGTAGGCCTGCCTGTCCTGGAACTCACT-TAAAGA-CAGG  89

seq1  CTGGCCTGGACCTCAGAGACACAGCCTCTGCTTCCCAAGTGCTGTGATTA  150
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CTGGCCTGGA-CTCAGAGACACAGCCTCTGCTT-CCAAGTGCTGTGATTA  137

seq1  CAGGCATGTGCCACCACTACCCTGCATCTTGGCCTTCTTTTAAAACCACA  200
      |||||||||||||||||||||||||||| ||||||||||||||| |  ||
seq2  CAGGCATGTGCCACCACTACCCTGCATC-TGGCCTTCTTTTAAACCACCA  186

seq1  GACCAAAGACTTCACCCTCCTCTCCCTTTGTCTCTTTCTGTGTCTCAGCA  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACCAAAGACTTCACCCTCCTCTCCC-TTGTCTCTTTCTGTGTCTCAGCA  235

seq1  CCTCTTCTGATACTTTATATCCTGTTTTGTGGCAAAGGAAGGAGTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGATACTTTATATCCTGTTTTGTGGCAAAGGAAGGAGTCCTCA  285

seq1  GCACAGGAAGCCCGAGGGCTGGGAAGACGGATCTTTGGCTTGCCATAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGAAGCCCGAGGGCTGGGAAGACGGATCTTTGGCTTGCCATAGAG  335

seq1  -CCCCAGCTTAACTGTGCTATGGTTCTCGGGTCTCTTCTTGTATGCTGAC  399
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCTTAACTGTGCTATGGTTCTCGGGTCTCTTCTTGTATGCTGAC  385

seq1  TTTAGCTGACGTTGACAAAACAGGGCACAACAGAGGAAATGCTAAGCCCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGACGTTGACAAAACAGGGCACAACAGAGGAAATGCTAAGCCCG  435

seq1  AGGCAGAACACACGCCAAAGCCACTTGCCGATGTTTAGAAGCCTGTACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAACACACGCCAAAGCCACTTGCCGATGTTTAGAAGCCTGTACTA  485

seq1  TTTCTTCCTCAGAGTCTGAATTGGCTGGGAACATTTAGAAGCTATAGTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTCAGAGTCTGAATTGGCTGGGAACATTTAGAAGCTATAGTAC  535

seq1  CACATTTTAGGGCCTGTGTGGCATTGCATTCCTGAAATCCCAGCATTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTAGGGCCTGTGTGGCATTGCATTCCTGAAATCCCAGCATTTGG  585

seq1  AAGCCTGAGGCAGGAGGGTTAACAGTTACCAGGACAAAATTGATACTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAGGCAGGAGGGTTAACAGTTACCAGGACAAAATTGATACTGTA  635

seq1  ACAGGCTGCTCCCAGACACTGTTGGAAGAAAGAGAGAGAGAGGAAGAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGCTCCCAGACACTGTTGGAAGAAAGAGAGAGAGAGGAAGAAAG  685

seq1  AAAGAAGCAAGAAAGGAAAGAGGAAAGAGAGAGAGGGAGAGAGAGGAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCAAGAAAGGAAAGAGGAAAGAGAGAGAGGGAGAGAGAGGAAGA  735

seq1  AGAAGGAGAGGAGGAGGAGAGAGGAAGGGAGGAAGGGAGGGAGGAAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAGGAGGAGGAGAGAGGAAGGGAGGAAGGGAGGGAGGAAGGGA  785

seq1  GGGAGGGAGGGAGGAAGGAAAAAAGGTGAGACAATTTAGAAGTAAAAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGGAGGAAGGAAAAAAGGTGAGACAATTTAGAAGTAAAAGCA  835

seq1  CTTGCCACCTGAGTCTGGTGCCATGAGTTCAATCCCTGTAACCCAGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACCTGAGTCTGGTGCCATGAGTTCAATCCCTGTAACCCAGGAAA  885

seq1  AGATGGGAGGAGTCAACAGAGTGCACAGTTGTCCCCTGAGCTCCACGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAGGAGTCAACAGAGTGCACAGTTGTCCCCTGAGCTCCACGTGC  935

seq1  ACACCATAGCACAAATGTGCTTGCATTTACACCACACCCCAAAATCCAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATAGCACAAATGTGCTTGCATTTACACCACACCCCAAAATCCAAG  985

seq1  GGGGGTAGGAATTC  1013
      ||||||||||||||
seq2  GGGGGTAGGAATTC  999