BAC Information

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BAC

Clone NameB6Ng01-064O20
Chromosome3 (Build37)
Map Location 70,529,822 - 70,627,695
singlet/doubletdoublet
Overlap geneEG625901
Upstream geneNmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
Downstream geneEG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O20.bB6Ng01-064O20.g
ACCDH884569DH884570
length3901,074
definitionDH884569|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O20, 5' end.DH884570|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,529,822 - 70,530,217)(70,626,618 - 70,627,695)
sequence
atagtaaaccacatggctaagtctcctaaatgctaggattagaggtctgg
atcacaatactcaattagaaacaatgctttatgtaattgtttgaatgtgt
gacttccttttacatattttgttttcatttttcactcttggagactttta
aataaatataacagggggcatttttacttttttgttgttgttgttttgtt
ttggttttttttgttgttgttgtttggttggttggtttttttctagacag
gctttctctgtgtggtcctggttgtcctggaactcacactgtagaccagg
ctggcctcgaactcagaatttcgcctgcctctgcctctcatgtgctggga
ttaaaggctgtgccaccacgtccggctcgacatttttact
gaattcaaaagacagatctatctcttttgactaagataccttcttgacac
agagagcagagctgtagattcaagagggaatcacctaaaaccacagaggt
atattacaatcctgctgttgtttcatttgctctatttaaaattaattggg
gccagaaacatcagctttcctcatattttgttcatgtggggggttataca
tctattaccctatttatacttggtaagaagatacttttacacttcaatag
ttcaaaagatggaaaggaaatttcttcaaggaaatattctatgtatagaa
tacttctagcctatgtgtaatccagataatttacatatataaaatatata
tatattttaaaagatattattatatttagacagattagatgatttaaatt
agagcagcaattgagtatcaatggaaatacgaataggctacacatgttaa
acgtttgggatgaacataaattttcaaggtctagagagtagattctggta
tttagaaatatatcactgaaaaatattcttgacctaacttctaatatgtc
ctgaagcatgtgacactcaatatttcaaccataaagggagagtaatttta
catcttgatgaattaccaatacccaccactagcatcggagaagagtgaga
atcatagaaggaacatagcatgaagcagaataatatagaggacaattatg
attaatatatttccatgcattatagataccaccaattgaacctctttgta
caattaatatatgctaataaatcataattataagttgagacagacagcca
ctgttttataaataagccaaaacatacatgcattgttgaatgtggtacat
tttcataaaaccctgctagtggaagatcaaatgctctttttgagcataat
atacacaaatatttatatacatattatcctgatgtttccaccatgggtta
cttacccataagaaactaaaatcttttcttttataaactatttgttttaa
cagaatgcccatagtagttgaacctaatataaaccccctaaaaatattcc
aaagtcctttcatatggaagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_70529822_70530217
seq2: B6Ng01-064O20.b_48_443

seq1  GAATTCATAGTAAACCACATGGCTAAGTCTCCTAAATGCTAGGATTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTAAACCACATGGCTAAGTCTCCTAAATGCTAGGATTAGAG  50

seq1  GTCTGGATCACAATACTCAATTAGAAACAATGCTTTATGTAATTGTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATCACAATACTCAATTAGAAACAATGCTTTATGTAATTGTTTGA  100

seq1  ATGTGTGACTTCCTTTTACATATTTTGTTTTCATTTTTCACTCTTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACTTCCTTTTACATATTTTGTTTTCATTTTTCACTCTTGGAGA  150

seq1  CTTTTAAATAAATATAACAGGGGGCATTTTTACTTTTTTGTTGTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATAAATATAACAGGGGGCATTTTTACTTTTTTGTTGTTGTTGT  200

seq1  TTTGTTTTGGTTTTTTTTGTTGTTGTTGTTTGGTTGGTTGGTTTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGGTTTTTTTTGTTGTTGTTGTTTGGTTGGTTGGTTTTTTTCT  250

seq1  AGACAGGCTTTCTCTGTGTGGTCCTGGTTGTCCTGGAACTCACACTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCTTTCTCTGTGTGGTCCTGGTTGTCCTGGAACTCACACTGTAG  300

seq1  ACCAGGCTGGCCTCGAACTCAGAATTTCGCCTGCCTCTGCCTCTCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCGAACTCAGAATTTCGCCTGCCTCTGCCTCTCATGTG  350

seq1  CTGGGATTAAAGGCTGTGCCACCACGCCCGGCTCGACATTTTTACT  396
      |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGGATTAAAGGCTGTGCCACCACGTCCGGCTCGACATTTTTACT  396

seq1: chr3_70626618_70627695
seq2: B6Ng01-064O20.g_70_1143 (reverse)

seq1  TCTTCTTTTCATATGATAGACCTTTGGAGTATTGTTAGGGGGTATTAT-T  49
      ||||| || ||||||| ||  ||||||| |||| ||||||||| |||| |
seq2  TCTTC-TTCCATATGAAAGGACTTTGGAATATTTTTAGGGGGT-TTATAT  48

seq1  TAGGTTCAACTACTATGGGCATTTCTGTTATATACAATAGTATATATAAG  99
      ||||||||||||||||||||| |||||||| |   |||||| |||| |||
seq2  TAGGTTCAACTACTATGGGCA-TTCTGTTAAAACAAATAGTTTATAAAAG  97

seq1  AAAAGATTTTAGTTTCTTTATGGGTAAGTAACTCATGGTGGAAACATCAG  149
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  AAAAGATTTTAGTTTC-TTATGGGTAAGTAACCCATGGTGGAAACATCAG  146

seq1  GAT-ATATGTATATAAATATTTGTGTATATTATGCTCAAAAAAGAGCATT  198
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATAATATGTATATAAATATTTGTGTATATTATGCTC-AAAAAGAGCATT  195

seq1  TGATCTTCCACTAGCAGGGTTTTTATGAAAATGTACCACATTCAACAATG  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGATCTTCCACTAGCAGGG-TTTTATGAAAATGTACCACATTCAACAATG  244

seq1  CATGTATGTTTTGGCTTATTTATAAAACAGTGGCTGTCTGTCTCAACTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTTTTGGCTTATTTATAAAACAGTGGCTGTCTGTCTCAACTTA  294

seq1  TAATTATGATTTATTAGCATATATTAATTGTACAAAGAGGTTCAATTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGATTTATTAGCATATATTAATTGTACAAAGAGGTTCAATTGGT  344

seq1  GGTATCTATAATGCATGGAAATATATTAATCATAATTGTCCTCTATATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTATAATGCATGGAAATATATTAATCATAATTGTCCTCTATATTA  394

seq1  TTCTGCTTCATGCTATGTTCCTTCTATGATTCTCACTCTTCTCCGATGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCATGCTATGTTCCTTCTATGATTCTCACTCTTCTCCGATGCT  444

seq1  AGTGGTGGGTATTGGTAATTCATCAAGATGTAAAATTACTCTCCCTTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGGTATTGGTAATTCATCAAGATGTAAAATTACTCTCCCTTTAT  494

seq1  GGTTGAAATATTGAGTGTCACATGCTTCAGGACATATTAGAAGTTAGGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAATATTGAGTGTCACATGCTTCAGGACATATTAGAAGTTAGGTC  544

seq1  AAGAATATTTTTCAGTGATATATTTCTAAATACCAGAATCTACTCTCTAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTTTTCAGTGATATATTTCTAAATACCAGAATCTACTCTCTAG  594

seq1  ACCTTGAAAATTTATGTTCATCCCAAACGTTTAACATGTGTAGCCTATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAAATTTATGTTCATCCCAAACGTTTAACATGTGTAGCCTATTC  644

seq1  GTATTTCCATTGATACTCAATTGCTGCTCTAATTTAAATCATCTAATCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCATTGATACTCAATTGCTGCTCTAATTTAAATCATCTAATCTG  694

seq1  TCTAAATATAATAATATCTTTTAAAATATATATATATTTTATATATGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATAATAATATCTTTTAAAATATATATATATTTTATATATGTAA  744

seq1  ATTATCTGGATTACACATAGGCTAGAAGTATTCTATACATAGAATATTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGGATTACACATAGGCTAGAAGTATTCTATACATAGAATATTTC  794

seq1  CTTGAAGAAATTTCCTTTCCATCTTTTGAACTATTGAAGTGTAAAAGTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAAATTTCCTTTCCATCTTTTGAACTATTGAAGTGTAAAAGTAT  844

seq1  CTTCTTACCAAGTATAAATAGGGTAATAGATGTATAACCCCCCACATGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACCAAGTATAAATAGGGTAATAGATGTATAACCCCCCACATGAA  894

seq1  CAAAATATGAGGAAAGCTGATGTTTCTGGCCCCAATTAATTTTAAATAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGAGGAAAGCTGATGTTTCTGGCCCCAATTAATTTTAAATAGA  944

seq1  GCAAATGAAACAACAGCAGGATTGTAATATACCTCTGTGGTTTTAGGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGAAACAACAGCAGGATTGTAATATACCTCTGTGGTTTTAGGTGA  994

seq1  TTCCCTCTTGAATCTACAGCTCTGCTCTCTGTGTCAAGAAGGTATCTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTGAATCTACAGCTCTGCTCTCTGTGTCAAGAAGGTATCTTAG  1044

seq1  TCAAAAGAGATAGATCTGTCTTTTGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  TCAAAAGAGATAGATCTGTCTTTTGAATTC  1074