BAC Information

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BAC

Clone NameB6Ng01-065A11
Chromosome3 (Build37)12 (Build37)
Map Location 41,059,163 - 41,059,73725,300,836 - 25,301,955
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065A11.bB6Ng01-065A11.g
ACCDH884632DH884633
length9951,111
definitionDH884632|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A11, 5' end.DH884633|Mus musculus domesticus DNA, BAC clone: B6Ng01-065A11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,163 - 41,059,737)(25,300,836 - 25,301,955)
sequence
gaattctttgtttagctctgaaccccatcttaaattagggttatttgatt
ttctggagtccagcttcttgagttctttgtaaatattggatattagtccc
ctatcagatttaagattggtaaaaatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttctgccttacagaagctttgcaatttta
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgtttaggaatttttcccctgtgtccataacttcgagactttcccctac
tttcccctctattaattccagtgtctctggtcttatgtggaggtctttga
tccacttagatttgaccttagtacaaggagataagaatggatcaattcac
attcttctacatgataactgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttcaactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtggattcatttctgggtcttcaattctattccattga
tctacctgtctgtcactgtaccagtacacatttgtcttttcttaatttta
tttttatatgaatgagtgttttgcctgcacatctgtctgtgcaccatttg
tgtgccttgtggcttgagagaccaacagattccctggaactggagttatg
aaggttgtgggccaccactgggctctgggagttgaactcaagtcctctag
aagaacaggcagtgctcttaaccaatgagcccccagagttgtcatttaac
attcccacaatatcttatcgtggtgacataattcctgctacgtgaggagt
tagagttccaggattttactggtcagaggcttttctgtgactacagatgg
atatgtacagtagaaatacagccaagtgatgccactgtggagacaccaga
gagctctctaacgaagagtttactatgtttgctgtaacttctgct
gaattcagagaaagtgttccagctgagaagcccaggcacctaccctgcag
aaccttaaatatcagggaaggaacctttcacgtaggaaatggcgctgtgt
ataccgtgctgtgttgatgttttcttttggatagaaatccatgtgttgtt
ttgttgttgttgtttgaatttctgatgtgcttagaaagcgaagcatgaga
actttgtaccggatctaagagaccatgggaccgtttgggttacctgctcc
actacctgtcaaagtctgcctgtgtccataagagtggtgggctactggct
ggcgagagaggggaaggcagtagcttgtctttgaggcttttgtgttctcg
cctgacctcagtctaactctgactgccttgaggagtgggcccagccctca
gcaataaagggctaagccttctccctccacctctcctccagtgtttacta
aatagggtgcattactggaaccttcccgtgcaacttccttggacatgtgg
actgcctttctgatgaagaacttgcgtgagtgacagtgtgaagttagctc
tgttaaagctgcgttgtatataagtgcaatatctttttgaaggtctgcct
gtaaatgtgtacatatatgtctgatataaatatataatatataaatgcgg
tatctgtgtacagatagtgaaggtgagcaggaagatctaccttgaaatcc
ctcttagagaagaggttaagttattattgataatgtggaccaagcaggta
gaacgctgttttcccaaaaacaagcaagtgttccctagcatagcaaaaag
ccatctcgtgtggcagagccatctgctcttgcgatgttgtcaccgtgtgg
gtttctgcaccctgagtggagctaatggaagactggactgcagctactat
atgaggtgtgtgtgcaagtgtcagccagtgtgccatgcagagactcatcc
gtggtcatgagccgcgatacaacccaaattgggccgattctacaaggcat
gtttcaaacttccaagcatcacctaccgtggtgtttgaactggaaaggct
tcatgaaattacttactggtggcagggaatgttttgggccacttaaatta
taagacaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059163_41059737
seq2: B6Ng01-065A11.b_46_621 (reverse)

seq1  GTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACT  50
      ||||||||| ||||||||||| | ||| ||||||||||||||||||||| 
seq2  GTACTGGTACAGTGACAGACAGGTAGATCAATGGAATAGAATTGAAGACC  50

seq1  CAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  100
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAAATGAATCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCT  100

seq1  AAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCA  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAACCATCCAGTTGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCA  150

seq1  CAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTC  200
      |||||||  ||||||||||||||||||| ||||||||||| || ||||||
seq2  CAACTGGCAGTTATCATGTAGAAGAATGTGAATTGATCCATTCTTATCTC  200

seq1  CTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCA  250
      ||||||||||||||||||||||||||||||| || | |||||||| ||||
seq2  CTTGTACTAAGGTCAAATCTAAGTGGATCAAAGACCTCCACATAAGACCA  250

seq1  GAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATAT  300
      ||||||||| || | ||||||| |||||| ||| |||| || |||| |||
seq2  GAGACACTGGAATTAATAGAGGGGAAAGTAGGGGAAAGTCTCGAAGTTAT  300

seq1  GGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAA  350
      || ||||||||||||||||||  | |||||||||||||||||||||||||
seq2  GGACACAGGGGAAAAATTCCTAAACAGAACAGCAATGGCTTGTGCTGTAA  350

seq1  GATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAG  400
      |||  ||||| ||||||||||||||||| ||| ||||||||||||| |||
seq2  GATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAG  400

seq1  GCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAG  449
      ||| ||||||| |||||||||||||||||| |||||||||||||||||||
seq2  GCAGAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAG  450

seq1  GATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATC  499
      ||| |||||| ||| |||||| ||||||||||||||||||||||| ||  
seq2  GATTTTTACCAATCTTAAATCTGATAGGGGACTAATATCCAATATTTACA  500

seq1  AAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAA  549
      |||||||||||||| |||| |||||||||||||||||||| | |  || |
seq2  AAGAACTCAAGAAGCTGGACTCCAGAAAATCAAATAACCCTAATTTAAGA  550

seq1  TGGGGCTCAGAGCTAAACAAAGAATT  575
      ||||| ||||||||||||||||||||
seq2  TGGGGTTCAGAGCTAAACAAAGAATT  576

seq1: chr12_25300836_25301955
seq2: B6Ng01-065A11.g_72_1182

seq1  GAATTCAGTGAAAGTGTTCCAGCTGAGAAGCCCAGGCACCTACCCTGCAG  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAAGTGTTCCAGCTGAGAAGCCCAGGCACCTACCCTGCAG  50

seq1  AACCTTAAATATCAGGGAAGGAACCTTTCACGTAGGAAATGGCGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAAATATCAGGGAAGGAACCTTTCACGTAGGAAATGGCGCTGTGT  100

seq1  ATACCGTGCTGTGTTGATGTTTTCTTTTGGATAGAAATCCATGTGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGTGCTGTGTTGATGTTTTCTTTTGGATAGAAATCCATGTGTTGTT  150

seq1  TTGTTGTTGTTGTTTGAATTTCTGATGTGCTTAGAAAGCGAAGCATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTGAATTTCTGATGTGCTTAGAAAGCGAAGCATGAGA  200

seq1  ACTTTGTACCGGATCTAAGAGACCATGGGACCGTTTGGGTTACCTGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTACCGGATCTAAGAGACCATGGGACCGTTTGGGTTACCTGCTCC  250

seq1  ACTACCTGTCAAAGTCTGCCTGTGTCCATAAGAGTGGTGGGCTACTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGTCAAAGTCTGCCTGTGTCCATAAGAGTGGTGGGCTACTGGCT  300

seq1  GGCGAGAGAGGGGAAGGCAGTAGCTTGTCTTTGAGGCTTTTGTGTTCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGAGAGGGGAAGGCAGTAGCTTGTCTTTGAGGCTTTTGTGTTCTCG  350

seq1  CCTGACCTCAGTCTAACTCTGACTGCCTTGAGGAGTGGGCCCAGCCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTCAGTCTAACTCTGACTGCCTTGAGGAGTGGGCCCAGCCCTCA  400

seq1  GCAATAAAGGGCTAAGCCTTCTCCCTCCACCTCTCCTCCAGTGTTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGGGCTAAGCCTTCTCCCTCCACCTCTCCTCCAGTGTTTACTA  450

seq1  AATAGGGTGCATTACTGGAACCTTCCCGTGCAACTTCCTTGGACATGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGTGCATTACTGGAACCTTCCCGTGCAACTTCCTTGGACATGTGG  500

seq1  ACTGCCTTTCTGATGAAGAACTTGCGTGAGTGACAGTGTGAAGTTAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTTCTGATGAAGAACTTGCGTGAGTGACAGTGTGAAGTTAGCTC  550

seq1  TGTTAAAGCTGCGTTGTATATAAGTGCAATATCTTTTTGAAGGTCTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGCTGCGTTGTATATAAGTGCAATATCTTTTTGAAGGTCTGCCT  600

seq1  GTAAATGTGTACATATATGTCTGATATAAATATATAATATATAAATGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTGTACATATATGTCTGATATAAATATATAATATATAAATGCGG  650

seq1  TATCTGTGTACAGATAGTGAAGGTGAGCAGGAAGATCTACCTTGAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTACAGATAGTGAAGGTGAGCAGGAAGATCTACCTTGAAATCC  700

seq1  CTCTTAGAGAAGAGGTTAAGTTATTATTGATAATGTGGACCAAGCAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAGAAGAGGTTAAGTTATTATTGATAATGTGGACCAAGCAGGTA  750

seq1  GAACGCTGTTTTCCCAAAAACAAGCAAGTGTTCCCTAGCATAGCAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTGTTTTCCCAAAAACAAGCAAGTGTTCCCTAGCATAGCAAAAAG  800

seq1  CCATCTCGTGTGGCAGAGCCATCTGCTCTTGCGAATGTTGTCACCGTGTG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATCTCGTGTGGCAGAGCCATCTGCTCTTGCG-ATGTTGTCACCGTGTG  849

seq1  GGTTTCTGCACCCTGAGTGGAGCTAATGGAAGACTGGACTGCAGCTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGCACCCTGAGTGGAGCTAATGGAAGACTGGACTGCAGCTACTA  899

seq1  TATGAGGTGTGTGTGCAGGTGTCAGCCAGCTGTGCCCATGCAGAGACTCA  950
      ||||||||||||||||| ||||||||||| |||| |||||||||||||||
seq2  TATGAGGTGTGTGTGCAAGTGTCAGCCAG-TGTG-CCATGCAGAGACTCA  947

seq1  GCCGTTGTCATGAGCCAGCGATACAAACCAAAATGGGCCGATTCTACAAG  1000
       |||| |||||||||| ||||||||| ||||| |||||||||||||||||
seq2  TCCGTGGTCATGAGCC-GCGATACAACCCAAATTGGGCCGATTCTACAAG  996

seq1  GCCATGTTTCAGAGCTTCCAAGCATCAGCTACCGT-GTGTTTGAACTGGA  1049
      | ||||||||| | ||||||||||||| ||||||| ||||||||||||||
seq2  G-CATGTTTCA-AACTTCCAAGCATCACCTACCGTGGTGTTTGAACTGGA  1044

seq1  AGGCATTCATGAATTTACATAACTGTGGCAGGGGAATGTTTTGTGCACAC  1099
      | |  |||||||| |||| ||   |||||| |||||||||||| || |||
seq2  AAGGCTTCATGAAATTACTTACTGGTGGCA-GGGAATGTTTTGGGC-CAC  1092

seq1  TTAAATATTTAAGAACAAAAC  1120
      |||||| | |||| |||||||
seq2  TTAAAT-TATAAG-ACAAAAC  1111