BAC Information

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BAC

Clone NameB6Ng01-065C04
Chromosome3 (Build37)
Map Location 36,448,520 - 36,555,334
singlet/doubletdoublet
Overlap geneExosc9, Ccna2, Bbs7, Trpc3
Upstream geneLOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709
Downstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065C04.bB6Ng01-065C04.g
ACCDH884703DH884704
length1,1001,040
definitionDH884703|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C04, 5' end.DH884704|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,554,234 - 36,555,334)(36,448,520 - 36,449,576)
sequence
gaattcttccgatttgatcatgtctacagcctttcccaggaggtcacctg
atgatgacgttaaatgtgagacagtttcaaaattgtgagccttacaggct
tgcatctttcatcccagcattcaagagcctgaggcaggagtccaaattca
agaccagccgggctcataatgagtgagaccctgtcttaaaagaaaaaggg
gggtgagaaaggaagttagtaagtaagtggtttggaaaaaaaggcctaac
atagacttggcaggcagcaacagtgggattaacagcagataatcagtttt
ggggtgctatatcgaggcaccatcgttagggtgatttatagacagcagaa
actcatttcttacagtgttggggctgcacgtttgaggttaagatggcagc
agagctgtttctggccagggccacttattgagttgcaagctgctgacctc
acttgtagcaaaaacatagggggtaggggtagggtgctcattatacactg
gtaccaatatcaccgtctcacgtgttccatccccaggccccacacacgcc
ctgcagctctgcctcccaaggccagcacactgggagttaggagttcaaaa
tgtgaatttgatgaaggcactgaatttgactcaaaggaatgctgtttttc
acactaagtcatccagcgaagcaagtaatcactaggccagcctgggttta
caatgtgagaccctgcatcagaaaactgaaaacattttagaggcaagaag
tagcatggagaaactctgtacaaggtctaaaaaacaaaaacagggctgga
aagataagtcagcagttaagagccgagctgatgtgggctgtgcataacca
ctgtgcagatctttccatatctagccacagtacacacagctcgaatgtgc
acatttacaatacttctcatgcaggtagtatttaaggcgtactcaggaaa
ggagcacaattacttgatttctttcccattttgaattaatacaagacgtt
agcatgcgtcatggtggggggcatgctttcccttaagaaacccagcatca
ccacagccaagaggaactcgttcccagcaagtggcggaggaaggcgtcaa

gaattcaaacagggcagaaacctggaagtaggagatgatgcagacaccat
ggagggggggtgtttcctggcttacttcccacggcttgctcagtttgctc
tcttagagaacccaggaccgtcagtttagggatgaccccactcactccat
taataactaatttaagaaaatgccctacagctggatgttatggagatgtc
ttctcaattgaggttctctccttccagatagctctagtttgtgtgtcaag
ttgacacgacactagccagcacgctaaagaacttgtccagaatctcagaa
acagtcaaaggcaaaggctaattccagctcaaacaatttagagttcctgc
ttttaattactttatattgtaactccccccaagtgagtgttaattctcac
agcatcaccagagtttctgtgcaatagacgaggggggctgcttcttcctg
gggcacagacagatgctgaatgctcttaggcactttggaactctgaaagg
cactattagggttattagtgttcttatagtaagtgttccttctaattaaa
aaaaaaaagttattaaagacagtggggttgggcaacatgactccttattc
agcagctgttggtttcttcctgctgcctgagtaaaagaactatcagtcag
ctgtatttctacccagcccagccttcttgaccacccactgacactgagaa
cacaacatactgactatagctggttgtcagtcttctggactcagccatag
cttttaggaacagtttgggtcagattttttggtatcgcgagccttagtaa
actccatgttaggacatcttaaactttccccattcttgccttcttttcac
ctgagaactttctgtacccctaagtatgcagtatgtaaagtaggcatgca
aataaaacatacacaaactttgaggaacttattattaggttctttgagag
aggtttcactgtgtagccctggctgtctgaactcgtgtgtagactttgtg
cctcaacctcagagactgctgcctctgctcccaagtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36554234_36555334
seq2: B6Ng01-065C04.b_44_1143 (reverse)

seq1  TGGACGCCCTTCCTCAGCC-CTTGCTGGGAACTGAG-TCCTCTCTGGCTG  48
      | |||| |||||||| ||| |||||||||||| ||| |||||| ||||||
seq2  TTGACG-CCTTCCTCCGCCACTTGCTGGGAAC-GAGTTCCTCT-TGGCTG  47

seq1  TGGTGATGCTGGGTTTCTTTAGGGAAAGCATG-CCCCCACCATGACGCCT  97
      ||||||||||||||||||| |||||||||||| ||||||||||||||| |
seq2  TGGTGATGCTGGGTTTCTTAAGGGAAAGCATGCCCCCCACCATGACGCAT  97

seq1  GCTAACGTCCTTGTATTTATTTCAAAATGGGAAAGAAAATCAGTTATTGT  147
      |||||||| |||||| ||| ||||||||||||||||||   ||| |||||
seq2  GCTAACGT-CTTGTA-TTAATTCAAAATGGGAAAGAAATCAAGTAATTGT  145

seq1  GCTCCTTTCATGAGTTACGCCTAAAATACTACCTGCATGAGAAGTA-TGT  196
      ||||||||| |||| ||||||| ||||||||||||||||||||||| |||
seq2  GCTCCTTTCCTGAG-TACGCCTTAAATACTACCTGCATGAGAAGTATTGT  194

seq1  AAATTGTGCACATTCGAGCTGTGTGTACTGTGGCTAGATATGGAAAGATC  246
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAA-TGTGCACATTCGAGCTGTGTGTACTGTGGCTAGATATGGAAAGATC  243

seq1  TGCACAGTGGTTATGCACAGCCCACATCAGCTCGGCTCTTAACTGCTGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGGTTATGCACAGCCCACATCAGCTCGGCTCTTAACTGCTGAC  293

seq1  TTATCTTTCCAGCCCTGTTTTTGTTTTTTAGACCTTGTACAGAGTTTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCCAGCCCTGTTTTTGTTTTTTAGACCTTGTACAGAGTTTCTC  343

seq1  CATGCTACTTCTTGCCTCTAAAATGTTTTCAGTTTTCTGATGCAGGGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACTTCTTGCCTCTAAAATGTTTTCAGTTTTCTGATGCAGGGTCT  393

seq1  CACATTGT-AACCCAGGCTGGCCTAGTGATTACTTGCTTCGCTGGATGAC  445
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTAAACCCAGGCTGGCCTAGTGATTACTTGCTTCGCTGGATGAC  443

seq1  TTAGTGTG-AAAACAGCATTCCTTTGAGTCAAATTCAGTGCCTTCATCAA  494
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGAAAAACAGCATTCCTTTGAGTCAAATTCAGTGCCTTCATCAA  493

seq1  ATTCACATTTTGAACTCCTAACTCCCAGTGTGCTGGCCTTGGGAGGCAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTTTGAACTCCTAACTCCCAGTGTGCTGGCCTTGGGAGGCAGA  543

seq1  GCTGCAGGGCGTGTGTGGGGCCTGGGGATGGAACACGTGAGACGGTGATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGGCGTGTGTGGGGCCTGGGGATGGAACACGTGAGACGGTGATA  593

seq1  TTGGTACCAGTGTATAATGAGCACCCTACCCCTACCCCCTATGTTTTTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCAGTGTATAATGAGCACCCTACCCCTACCCCCTATGTTTTTGC  643

seq1  TACAAGTGAGGTCAGCAGCTTGCAACTCAATAAGTGGCCCTGGCCAGAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGAGGTCAGCAGCTTGCAACTCAATAAGTGGCCCTGGCCAGAAA  693

seq1  CAGCTCTGCTGCCATCTTAACCTCAAACGTGCAGCCCCAACACTGTAAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCTGCCATCTTAACCTCAAACGTGCAGCCCCAACACTGTAAGA  743

seq1  AATGAGTTTCTGCTGTCTATAAATCACCCTAACGATGGTGCCTCGATATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTTCTGCTGTCTATAAATCACCCTAACGATGGTGCCTCGATATA  793

seq1  GCACCCCAAAACTGATTATCTGCTGTTAATCCCACTGTTGCTGCCTGCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAAAACTGATTATCTGCTGTTAATCCCACTGTTGCTGCCTGCCA  843

seq1  AGTCTATGTTAGGCCTTTTTTTCCAAACCACTTACTTACTAACTTCCTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGTTAGGCCTTTTTTTCCAAACCACTTACTTACTAACTTCCTTT  893

seq1  CTCACCCCCCTTTTTCTTTTAAGACAGGGTCTCACTCATTATGAGCCCGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCCCTTTTTCTTTTAAGACAGGGTCTCACTCATTATGAGCCCGG  943

seq1  CTGGTCTTGAATTTGGACTCCTGCCTCAGGCTCTTGAATGCTGGGATGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTTGAATTTGGACTCCTGCCTCAGGCTCTTGAATGCTGGGATGAA  993

seq1  AGATGCAAGCCTGTAAGGCTCACAATTTTGAAACTGTCTCACATTTAACG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAGCCTGTAAGGCTCACAATTTTGAAACTGTCTCACATTTAACG  1043

seq1  TCATCATCAGGTGACCTCCTGGGAAAGGCTGTAGACATGATCAAATCGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCAGGTGACCTCCTGGGAAAGGCTGTAGACATGATCAAATCGGA  1093

seq1  AGAATTC  1101
      |||||||
seq2  AGAATTC  1100

seq1: chr3_36448520_36449576
seq2: B6Ng01-065C04.g_68_1107

seq1  GAATTCAAACAGGGCAGAAACCTGGAAGTAGGAGATGATGCAGACACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGGGCAGAAACCTGGAAGTAGGAGATGATGCAGACACCAT  50

seq1  GGAGGGGGGGTGTTTCCTGGCTTACTTCCCACGGCTTGCTCAGTTTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGGTGTTTCCTGGCTTACTTCCCACGGCTTGCTCAGTTTGCTC  100

seq1  TCTTAGAGAACCCAGGACCGTCAGTTTAGGGATGACCCCACTCACTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGAACCCAGGACCGTCAGTTTAGGGATGACCCCACTCACTCCAT  150

seq1  TAATAACTAATTTAAGAAAATGCCCTACAGCTGGATGTTATGGAGATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTAATTTAAGAAAATGCCCTACAGCTGGATGTTATGGAGATGTC  200

seq1  TTCTCAATTGAGGTTCTCTCCTTCCAGATAGCTCTAGTTTGTGTGTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTGAGGTTCTCTCCTTCCAGATAGCTCTAGTTTGTGTGTCAAG  250

seq1  TTGACACGACACTAGCCAGCACGCTAAAGAACTTGTCCAGAATCTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACGACACTAGCCAGCACGCTAAAGAACTTGTCCAGAATCTCAGAA  300

seq1  ACAGTCAAAGGCAAAGGCTAATTCCAGCTCAAACAATTTAGAGTTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAAGGCAAAGGCTAATTCCAGCTCAAACAATTTAGAGTTCCTGC  350

seq1  TTTTAATTACTTTATATTGTAACTCCCCCCAAGTGAGTGTTAATTCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTACTTTATATTGTAACTCCCCCCAAGTGAGTGTTAATTCTCAC  400

seq1  AGCATCACCAGAGTTTCTGTGCAATAGACGAGGGGGGCTGCTTCTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACCAGAGTTTCTGTGCAATAGACGAGGGGGGCTGCTTCTTCCTG  450

seq1  GGGCACAGACAGATGCTGAATGCTCTTAGGCACTTTGGAACTCTGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGACAGATGCTGAATGCTCTTAGGCACTTTGGAACTCTGAAAGG  500

seq1  CACTATTAGGGTTATTAGTGTTCTTATAGTAAGTGTTCCTTCTAATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGGGTTATTAGTGTTCTTATAGTAAGTGTTCCTTCTAATTAAA  550

seq1  AAAAAAAAGTTATTAAAGACAGTGGGGTTGGGCAACATGACTCCTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTTATTAAAGACAGTGGGGTTGGGCAACATGACTCCTTATTC  600

seq1  AGCAGCTGTTGGTTTCTTCCTGCTGCCTGAGTAAAAGAACTATCAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGTTGGTTTCTTCCTGCTGCCTGAGTAAAAGAACTATCAGTCAG  650

seq1  CTGTATTTCTACCCAGCCCAGCCTTCTTGACCACCCACTGACACTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCTACCCAGCCCAGCCTTCTTGACCACCCACTGACACTGAGAA  700

seq1  CACAACATACTGACTATAGCTGGTTGTCAGTCTTCTGGACTCAGCCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATACTGACTATAGCTGGTTGTCAGTCTTCTGGACTCAGCCATAG  750

seq1  CTTTTAGGAACAGTTTGGGTCAGATTTTTTGGTATCGCGAGCCTTAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGAACAGTTTGGGTCAGATTTTTTGGTATCGCGAGCCTTAGTAA  800

seq1  ACTCCATGTTAGGACATCTTAAACTTTCCCCATTCTTGCCTTCTTTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGTTAGGACATCTTAAACTTTCCCCATTCTTGCCTTCTTTTCAC  850

seq1  CTGAGAAACTTTTCTGTACCCCTAAGTATGCAAGTATGTAAAGTAGGCAT  900
      |||||||   ||||||||||||||||||||| ||||||||||||||||||
seq2  CTGAGAA--CTTTCTGTACCCCTAAGTATGC-AGTATGTAAAGTAGGCAT  897

seq1  GCAAATAAAACATACAACAAACTTTGAGGAAACTTATTTATTTAGGTTCT  950
      ||||||||||||||| ||||||||||||| ||||||||   |||||||| 
seq2  GCAAATAAAACATAC-ACAAACTTTGAGG-AACTTATT--ATTAGGTTC-  942

seq1  TTTGAGAGAGGGTTTCACTGTGTAGCCCTGGCTGTCCTGAAACTCAGTGT  1000
      ||||||||| ||||||||||||||||||||||||| ||| ||||| ||||
seq2  TTTGAGAGA-GGTTTCACTGTGTAGCCCTGGCTGT-CTG-AACTC-GTGT  988

seq1  GTAGACCTTTGTGGCCTCAAACTCAGAGATCTGCCTGCCTCTGCCTCCCA  1050
      ||||| |||||| ||||||| |||||||| ||| ||||||||| ||||||
seq2  GTAGA-CTTTGT-GCCTCAACCTCAGAGA-CTG-CTGCCTCTG-CTCCCA  1033

seq1  AGTGCTG  1057
      |||||||
seq2  AGTGCTG  1040