BAC Information

Click to search

BAC

Clone NameB6Ng01-065D15
Chromosome3 (Build37)
Map Location 31,820,366 - 31,960,261
singlet/doubletdoublet
Overlap geneKcnmb2
Upstream genePhc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065D15.bB6Ng01-065D15.g
ACCDH884765DH884766
length1,0021,016
definitionDH884765|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D15, 5' end.DH884766|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,820,366 - 31,821,367)(31,959,244 - 31,960,261)
sequence
gaattcaactctttccccttttaacttaagactcaacttcagacacccag
ataaattgatctctgaccctctgattctgtaattctgattacagttttct
gcacagacgggcccaccgttttatctactaggtttgttttgttttggttt
ttggtgtttttaatgtgtgaatggctattatagccattccttagtacagg
tgggcaccagaccaagacaggatagatgtcagctgttggacatgaaggcg
ccttcctctgagaagagagcaaggaagtattgtctagagaaataagaaca
gagcaaaataagagcagacgcattttgaaggaagaaggctgagtgaactc
ccagtggtgttctcagagtaagaagacaggcagaggttagataggaggca
agagggagcaaggtgggtcatgaccgagatgtaagctgtctccagcccct
ctgagcatctgagtgaaggatgggattttttcctagtacctgggatgccc
tagatttagtctccaacacagactttttaaaggcattcgagcaggggcat
ttctcctctcaacagctttggctggcatttcctgggagagacacaaaaaa
ggcaatactatccctttattcctcttaggagaaaagcaaagaaaatttat
aatcagagaaattccaaataaataaacagttatgaataaccaggaaggga
tgctacagcaggctgtcacaagagagagagagatcttgagctatagattc
tgctgtctgtaaatgattcaaaactggtccatgaaggaccagaatctctg
agactgtcccccacctcctcccacacatgtgatagatgaactgacatgca
aagagggcctgagatttggccacatcaaggcagcaagcaccaggaaatct
gatagggaaactggtgaatcacatccacgcctggggctcccctccccact
cggtggtgagctctcgtagccaatgcctgtatttgtcctgggaggattaa
ta
gaattccagaaaggattttgacatgggattccagttgctttactaataaa
agtggtcaaaactttttgcttctggaattgtgatggagataaacaaggta
tatatggagccgcttaaataagcaatgcaaaagaaagcccgggagagggc
aagcaagaccagagctgtttggattaacatcaatgtgtcagattttaatt
tctatttagaatatgttgaacttctaacctgcaattctgatagtttattt
gaagttattgaacttaaccaaatgaacagcataatattttaaaacattca
tatatatatatatctgtctcagaaattgtccttgctggtggttgtgttag
aaacttttgctatacaaacacccatttgtagagtaaccattttgggttac
cccaatttatgctattgccctgcactgttagctagcttcagaaaacttgt
acaaaattaaacacaatcttctcctgttcatgcatggaatctagggttcc
ctggttcatgtatagaattcggggtttcttttccagttctcattcaagca
gccccacatatgtctttgttccatccctatcagaattgcagaaggagaaa
gttttgaccgtgtttacaggtgaaacagctaggattccatgtcaaattcc
tttctgggatttgtattgcgggctgcagacttttctgaggtgccatagat
aaaaaagcagtttctaccagcagctcttattcctcaggccaagccctgga
aaggcatgcttccttcttttgtggttcagttgcacacttgtagcctatgt
ctgaatgctcaattcaacacttctcagtgctgaagaccaggtgattttgc
caggatgtctggaaagcgggaagacttgttgcctagcaaccagaagcatc
tcagcttggtgtttgcagccctcctgactttttatacactgagcagatgt
taagctctgtttgattttaaggcataaaacagttaagtaaaagtgggaga
agcatttgcattgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_31820366_31821367
seq2: B6Ng01-065D15.b_41_1042

seq1  GAATTCAACTCTTTCCCCTTTTAACTTAAGACTCAACTTCAGACACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCTTTCCCCTTTTAACTTAAGACTCAACTTCAGACACCCAG  50

seq1  ATAAATTGATCTCTGACCCTCTGATTCTGTAATTCTGATTACAGTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGATCTCTGACCCTCTGATTCTGTAATTCTGATTACAGTTTTCT  100

seq1  GCACAGACGGGCCCACCGTTTTATCTACTAGGTTTGTTTTGTTTTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACGGGCCCACCGTTTTATCTACTAGGTTTGTTTTGTTTTGGTTT  150

seq1  TTGGTGTTTTTAATGTGTGAATGGCTATTATAGCCATTCCTTAGTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTTTAATGTGTGAATGGCTATTATAGCCATTCCTTAGTACAGG  200

seq1  TGGGCACCAGACCAAGACAGGATAGATGTCAGCTGTTGGACATGAAGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACCAGACCAAGACAGGATAGATGTCAGCTGTTGGACATGAAGGCG  250

seq1  CCTTCCTCTGAGAAGAGAGCAAGGAAGTATTGTCTAGAGAAATAAGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTGAGAAGAGAGCAAGGAAGTATTGTCTAGAGAAATAAGAACA  300

seq1  GAGCAAAATAAGAGCAGACGCATTTTGAAGGAAGAAGGCTGAGTGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAATAAGAGCAGACGCATTTTGAAGGAAGAAGGCTGAGTGAACTC  350

seq1  CCAGTGGTGTTCTCAGAGTAAGAAGACAGGCAGAGGTTAGATAGGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTGTTCTCAGAGTAAGAAGACAGGCAGAGGTTAGATAGGAGGCA  400

seq1  AGAGGGAGCAAGGTGGGTCATGACCGAGATGTAAGCTGTCTCCAGCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGCAAGGTGGGTCATGACCGAGATGTAAGCTGTCTCCAGCCCCT  450

seq1  CTGAGCATCTGAGTGAAGGATGGGATTTTTTCCTAGTACCTGGGATGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCTGAGTGAAGGATGGGATTTTTTCCTAGTACCTGGGATGCCC  500

seq1  TAGATTTAGTCTCCAACACAGACTTTTTAAAGGCATTCGAGCAGGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTAGTCTCCAACACAGACTTTTTAAAGGCATTCGAGCAGGGGCAT  550

seq1  TTCTCCTCTCAACAGCTTTGGCTGGCATTTCCT-GGAGAGACACAAAAAA  599
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCTCCTCTCAACAGCTTTGGCTGGCATTTCCTGGGAGAGACACAAAAAA  600

seq1  -GCAATACTATCCCTTTATTCCTCTTAGGAG-AAAGC-AAGAAAATTTAT  646
       |||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  GGCAATACTATCCCTTTATTCCTCTTAGGAGAAAAGCAAAGAAAATTTAT  650

seq1  AATCAGAGAAATTCCAAATAAATAAACAGTTATGAATAACCAGGAA-GGA  695
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATCAGAGAAATTCCAAATAAATAAACAGTTATGAATAACCAGGAAGGGA  700

seq1  TGCTACAGCAGGCTGTCACAAGAGAGAGAGAGATC-TGAGCTATAGATTC  744
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTACAGCAGGCTGTCACAAGAGAGAGAGAGATCTTGAGCTATAGATTC  750

seq1  TGCTGTCTGTAAATGATTCAAAACTGGTCCATGAA-GACCAGAATCTCTG  793
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTGTCTGTAAATGATTCAAAACTGGTCCATGAAGGACCAGAATCTCTG  800

seq1  AGACTGTCCCCCACCTCCTCCCACACATGTGATAGATGAACTGACATGCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTCCCCCACCTCCTCCCACACATGTGATAGATGAACTGACATGCA  850

seq1  AAGAGGGCCTGAGACTTGGCCACCATCAAGGCAGCAAGCACCAGGAAATC  893
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AAGAGGGCCTGAGATTTGGCCA-CATCAAGGCAGCAAGCACCAGGAAATC  899

seq1  TGGATAGTGAAACATGTGAATCACATCCACGCCTGGGGCTCCCCTCCCCA  943
      | ||||| |||||  |||||||||||||||||||||||||||||||||||
seq2  T-GATAGGGAAACTGGTGAATCACATCCACGCCTGGGGCTCCCCTCCCCA  948

seq1  CTCGGTGGTTGAGCTTCTCGGTTAGCCAAATGCCTGTATTTGTTCTGTGA  993
      |||||||| ||||| |||||  ||||| ||||||||||||||| ||| ||
seq2  CTCGGTGG-TGAGC-TCTCG--TAGCC-AATGCCTGTATTTGTCCTGGGA  993

seq1  GGATTAATA  1002
      |||||||||
seq2  GGATTAATA  1002

seq1: chr3_31959244_31960261
seq2: B6Ng01-065D15.g_68_1079 (reverse)

seq1  AATGCAAATGCTGTCTCCACTTTTTACTACTCTGTTTTATGCCTTTAAAA  50
      |||||||||||| |||||   |||||||   ||||||||||||||  |||
seq2  AATGCAAATGCT-TCTCCCACTTTTACTTAACTGTTTTATGCCTT--AAA  47

seq1  TTCAAACAGGAGGCTTAACATCTGCTCAGTGTATTAAAAAGTCAGGAGGG  100
       ||||||||   ||||||||||||||||||||| ||||||||||||||||
seq2  ATCAAACAG--AGCTTAACATCTGCTCAGTGTA-TAAAAAGTCAGGAGGG  94

seq1  CTGCAAACACCAAGCCGGAGACTGCTTCTGGTTGCTAGGCAACAAGTCTT  150
      |||||||||||||| | |||| ||||||||||||||||||||||||||||
seq2  CTGCAAACACCAAG-CTGAGA-TGCTTCTGGTTGCTAGGCAACAAGTCTT  142

seq1  CCCGCTTTCCAGACATCCTGGCAAAATCACCTGGTCTTCAGCACTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTTCCAGACATCCTGGCAAAATCACCTGGTCTTCAGCACTGAGAA  192

seq1  GTGTTGAATTGAGCATTCAGACATAGGCTACAAGTGTTGCAACTGAACCA  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGTTGAATTGAGCATTCAGACATAGGCTACAAGTG-TGCAACTGAACCA  241

seq1  CAAAAGAAGGAAGCATGCCTTTCCAGGGCTTGGCCTGAGGATTAAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAAAGAAGGAAGCATGCCTTTCCAGGGCTTGGCCTGAGGAATAAGAGCT  291

seq1  GCTGGTAGAAACTGC-TTTTTATCTATGGCACCTCAG-AAAGTCTGCAGC  348
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GCTGGTAGAAACTGCTTTTTTATCTATGGCACCTCAGAAAAGTCTGCAGC  341

seq1  CCGCAATACAAATCCCAGAAAGGAATTTGACATGGAATCCTAGCTGTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAATACAAATCCCAGAAAGGAATTTGACATGGAATCCTAGCTGTTTC  391

seq1  ACCTGTAAACACGGTCAAAACTTTCTCCTTCTGCAATTCTGATAGGGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAAACACGGTCAAAACTTTCTCCTTCTGCAATTCTGATAGGGATG  441

seq1  GAAC-AAGACATATGTGGGGCTGCTTGAATGAGAACTGGAAAAGAAACCC  497
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGACATATGTGGGGCTGCTTGAATGAGAACTGGAAAAGAAACCC  491

seq1  CGAATTCTATACATGAACCAGGGAACCCTAGATTCCATGCATGAACAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCTATACATGAACCAGGGAACCCTAGATTCCATGCATGAACAGGA  541

seq1  GAAGATTGTGTTTAATTTTGTACAAGTTTTCTGAAGCTAGCTAACAGTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGTGTTTAATTTTGTACAAGTTTTCTGAAGCTAGCTAACAGTGC  591

seq1  AGGGCAATAGCATAAATTGGGGTAACCCAAAATGGTTACTCTACAAATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATAGCATAAATTGGGGTAACCCAAAATGGTTACTCTACAAATGG  641

seq1  GTGTTTGTATAGCAAAAGTTTCTAACACAACCACCAGCAAGGACAATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTATAGCAAAAGTTTCTAACACAACCACCAGCAAGGACAATTTC  691

seq1  TGAGACAGATATATATATATATGAATGTTTTAAAATATTATGCTGTTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGATATATATATATATGAATGTTTTAAAATATTATGCTGTTCAT  741

seq1  TTGGTTAAGTTCAATAACTTCAAATAAACTATCAGAATTGCAGGTTAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAAGTTCAATAACTTCAAATAAACTATCAGAATTGCAGGTTAGAA  791

seq1  GTTCAACATATTCTAAATAGAAATTAAAATCTGACACATTGATGTTAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATATTCTAAATAGAAATTAAAATCTGACACATTGATGTTAATC  841

seq1  CAAACAGCTCTGGTCTTGCTTGCCCTCTCCCGGGCTTTCTTTTGCATTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCTCTGGTCTTGCTTGCCCTCTCCCGGGCTTTCTTTTGCATTGC  891

seq1  TTATTTAAGCGGCTCCATATATACCTTGTTTATCTCCATCACAATTCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAGCGGCTCCATATATACCTTGTTTATCTCCATCACAATTCCAG  941

seq1  AAGCAAAAAGTTTTGACCACTTTTATTAGTAAAGCAACTGGAATCCCATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAGTTTTGACCACTTTTATTAGTAAAGCAACTGGAATCCCATG  991

seq1  TCAAAATCCTTTCTGGAATTC  1018
      |||||||||||||||||||||
seq2  TCAAAATCCTTTCTGGAATTC  1012