BAC Information

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BAC

Clone NameB6Ng01-065G02
Chromosome3 (Build37)
Map Location 148,183,687 - 148,280,456
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G02.bB6Ng01-065G02.g
ACCDH884873DH884874
length1,0341,238
definitionDH884873|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G02, 5' end.DH884874|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,183,687 - 148,184,717)(148,279,178 - 148,280,456)
sequence
gaattcacccataaaagctgtcatttgcaacttgggagaattagagatga
acatattaggtgaactaagtcagacacagaaagatgagagtataacacca
agggatttcattcaaatggaattgaaaagcactgatcttgcagaagttaa
gaataaaacaatgtcttgcagagtctgaggagaggaaatggaggccacgt
gcaggagtgcaagcccaggagcacacaaatacatcctaggtgttaggatt
acaaatgtgtgcctcagcaccaaagcatgagacagatttagagaacagag
ttggaaagaggtcttaggcctcaagtgtccagtgaagcagcatccattaa
catccattaacatcagggatacagatgttctgaaacagaacaggtgagaa
agcaacaagcaggctgatttcgaggcccaagaaacattggtgcatacagc
tagttaatgtttggaaggtcagatctgggctttctaagagaagcgagggt
tggagatatgtcaagttcagcaggatgtgtgcggaaggaaatttaagttg
aaacagtgggcacaatcccctgggagagtgtcaggaaagagtaagggcgt
cctagaaaagaatcatgggaaagatctcccttttggcaggctgctcgagc
tgtatcttgaatacagttttgccatcttttttctcaagcttattaaccaa
taaaagctgacaaggcccagcttctaaacttaaatcccaagaaagtattt
tgtgtctgggttttccactcctggaccacgtagctttttttttttttttt
tttttttttttttttttttttttaaaattggcttatgttttccaggaatc
cctgatattttcaaaagctttttgttttccctcctatttttgggcaaaat
gtccaatttatttgaagatgttatgttccttggtcccttttcacattttc
acgctttctgggtttcccaagaaaaatcacctctctattcacagaataat
acctgagcgtaagcagcacggttggggcagactc
gaattcttggtctccgggtaggaacattctggaaccttctggaggtagag
ctttgctgagttctgggagtccctccacccctgcttcctatatagagaag
agatgtgaccagccagcgtcctgttcctctcaccagtctatgtcttccct
agacttgagccctcagaaactgtgagccgaaatagacagaccctttctcc
cctaagcttcttttcatcttcatcagggtatttacttcagcaaccgaaaa
gaaatcaatacagggacgggaagacttaggctagatgcttacggacgagg
aagacttaggctagatgcttacggacgaggaaggtacacgggaaggtatc
cagtttgccttgtagcttccttgtgagacaacgaaataaccacagtggac
ctaggtatggaggacctgggatagctcttataggccattctggtgactct
gactcttcaggtttatccctcttcactgtaatgagcctcattttatgaga
tgttcaacatcttttgaaatgaacttgaaaatgtctcatctaaataaata
aataaataaataaataaataaataaatattcctacctggaaaaaaaagtc
tcatttaatttactgcagagtgagtctgtgattagaccagattcaggact
gaaaacagaaccatgggttagattgacacagggagaagggcaatcaccca
gccattctcggtctatttttttcaggatagagagcactggggatgagtgc
gtcaaatacccctaaacccaggtggaaacctggggagcatttgggctgaa
aaaccagaatgaatttgaagataaagaacagaacacaacaacacaacaca
acaacacaatatccacatacagtattaacacaaaacaaaacaacattggc
tgagtctccttaattgctttcctctggggatggagacagcagaaatggct
ctgcagttaagcgcacacattgcttttatagaggacccaacttgattccc
tgactcgtgactagttccaagatgcttgaaactcactctggagagaggaa
tctcatgcttctggattcttcagtgctgcattaatgtggctgtggcgcag
tcttgcatggatgccaaaccacatgtttaaactatagaataatctaagga
tgtgtttacccactaatatcaccacctcgaaagacctcagtttaagtgct
aagagtgtacatgaagagacgtgtgacgagatatgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148183687_148184717
seq2: B6Ng01-065G02.b_45_1078

seq1  GAATTCACCCATAAAAGCTGTCATTTGCAACTTGGGAGAATTAGAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCATAAAAGCTGTCATTTGCAACTTGGGAGAATTAGAGATGA  50

seq1  ACATATTAGGTGAACTAAGTCAGACACAGAAAGATGAGAGTATAACACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTAGGTGAACTAAGTCAGACACAGAAAGATGAGAGTATAACACCA  100

seq1  AGGGATTTCATTCAAATGGAATTGAAAAGCACTGATCTTGCAGAAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTCATTCAAATGGAATTGAAAAGCACTGATCTTGCAGAAGTTAA  150

seq1  GAATAAAACAATGTCTTGCAGAGTCTGAGGAGAGGAAATGGAGGCCACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACAATGTCTTGCAGAGTCTGAGGAGAGGAAATGGAGGCCACGT  200

seq1  GCAGGAGTGCAAGCCCAGGAGCACACAAATACATCCTAGGTGTTAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTGCAAGCCCAGGAGCACACAAATACATCCTAGGTGTTAGGATT  250

seq1  ACAAATGTGTGCCTCAGCACCAAAGCATGAGACAGATTTAGAGAACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTGTGCCTCAGCACCAAAGCATGAGACAGATTTAGAGAACAGAG  300

seq1  TTGGAAAGAGGTCTTAGGCCTCAAGTGTCCAGTGAAGCAGCATCCATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGAGGTCTTAGGCCTCAAGTGTCCAGTGAAGCAGCATCCATTAA  350

seq1  CATCCATTAACATCAGGGATACAGATGTTCTGAAACAGAACAGGTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTAACATCAGGGATACAGATGTTCTGAAACAGAACAGGTGAGAA  400

seq1  AGCAACAAGCAGGCTGATTTCGAGGCCCAAGAAACATTGGTGCATACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAGCAGGCTGATTTCGAGGCCCAAGAAACATTGGTGCATACAGC  450

seq1  TAGTTAATGTTTGGAAGGTCAGATCTGGGCTTTCTAAGAGAAGCGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATGTTTGGAAGGTCAGATCTGGGCTTTCTAAGAGAAGCGAGGGT  500

seq1  TGGAGATATGTCAAGTTCAGCAGGATGTGTGCGGAAGGAAATTTAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATATGTCAAGTTCAGCAGGATGTGTGCGGAAGGAAATTTAAGTTG  550

seq1  AAACAGTGGGCACAATCCCCTGGGAGAGTGTCAGGAAAGAGTAAGGGCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGGGCACAATCCCCTGGGAGAGTGTCAGGAAAGAGTAAGGGCGT  600

seq1  CCTAGAAAAGAATCATGGGAAAGATCTCCC-TTTGGCAGGCTGCTCGAGC  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTAGAAAAGAATCATGGGAAAGATCTCCCTTTTGGCAGGCTGCTCGAGC  650

seq1  TGTATCTTGAATACAG-TTTGCCATCTTTTTTCTCAAGCTTATTAACCAA  698
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTATCTTGAATACAGTTTTGCCATCTTTTTTCTCAAGCTTATTAACCAA  700

seq1  TAAAAGCTGACAAGGCCCAGCTTCTAAACTTAAATCCCAAGAAAGTA-TT  747
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAAAGCTGACAAGGCCCAGCTTCTAAACTTAAATCCCAAGAAAGTATTT  750

seq1  TGTGTCTGGGTTTTCCACTCCTGGACCACGTAGCTTTTTTTTTTTTTTTT  797
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TGTGTCTGGGTTTTCCACTCCTGGACCACGTAGC--TTTTTTTTTTTTTT  798

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTATAATTTGCTTATGTTTTTCAGGAA  847
      |||||||||||||||||||||||||| |||| ||||||||||| ||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTAAAATTGGCTTATGTTTTCCAGGAA  848

seq1  TCCCTGATAATTTCAAAAGC-TATTGTTTCTCCT-CTATTTCTGGCAAAA  895
      ||||||||| |||||||||| | ||||||  ||| |||||| |||  |||
seq2  TCCCTGATATTTTCAAAAGCTTTTTGTTTTCCCTCCTATTTTTGGGCAAA  898

seq1  ATGTCCAATTTTATTTGAAGATGTTATGTT-CTTGGTCCATTTTCACATT  944
      |||||||| ||||||||||||||||||||| |||||||| ||||||||||
seq2  ATGTCCAA-TTTATTTGAAGATGTTATGTTCCTTGGTCCCTTTTCACATT  947

seq1  TTCA-GCTATTCT-GGTTTCCCAAGGAACATCACCTCTCTATTCACAGAA  992
      |||| ||| |||| ||||||||||| || |||||||||||||||||||||
seq2  TTCACGCT-TTCTGGGTTTCCCAAGAAAAATCACCTCTCTATTCACAGAA  996

seq1  GATAACTTGAGCGTAAGCAGCACGGGGTGGGGCAGACTC  1031
       |  || |||||||||||||||| || ||||||||||||
seq2  TAATACCTGAGCGTAAGCAGCAC-GGTTGGGGCAGACTC  1034

seq1: chr3_148279178_148280456
seq2: B6Ng01-065G02.g_66_1303 (reverse)

seq1  ACTCATATCTTGTCACACAGCTCATTTTCATGTACAATCATAAGGCATTT  50
      |||||||||| |||||||  |||   |||||||||| || ||  ||| ||
seq2  ACTCATATCTCGTCACACGTCTC---TTCATGTACACTCTTA--GCACTT  45

seq1  AAAATAAACTAGGAAGGTTCTTTCTGATGATTGTTGATATTATTGATGGG  100
      ||| | |         | |||||| || |  || ||||||||    ||||
seq2  AAACTGA---------GGTCTTTC-GAGG--TGGTGATATTA---GTGGG  80

seq1  TAACAACATCACTTTAAGATTTAATTCTATTAGTTTTAAACATGTGTGTT  150
      |||  ||||| |||  |||||  |||||| ||| |||||||||||| |||
seq2  TAAACACATC-CTT--AGATT--ATTCTA-TAG-TTTAAACATGTG-GTT  122

seq1  TGTGCATCCATGCAAGCATGCG-CACAAGCACATGTAAATGCAGGCACCT  199
      || |||||||||||||  |||| ||||  ||||  | |||||| ||| ||
seq2  TG-GCATCCATGCAAGACTGCGCCACAGCCACA--TTAATGCA-GCA-CT  167

seq1  GAAGAATCCAGAAGGCATGAGATTCCCTTCTCAAGGAGTTGGAGTTTCAG  249
      ||||||||||||| ||||||||||||  |||| | ||||  |||||||| 
seq2  GAAGAATCCAGAA-GCATGAGATTCCTCTCTCCA-GAGT--GAGTTTCAA  213

seq1  GCATCTGTGAACTAGTCAACGGAGGTTCAGGGAATCAAGTTGGGTCCTCT  299
      ||||||  ||||||||||   |||  ||||||||||||||||||||||||
seq2  GCATCTTGGAACTAGTCA--CGAG--TCAGGGAATCAAGTTGGGTCCTCT  259

seq1  ATAAAAGCAATGTGTGCGCTTAACTGCAGAGCCATTTCTGCTGTCCTCCA  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAAAAGCAATGTGTGCGCTTAACTGCAGAGCCATTTCTGCTGT-CTCCA  308

seq1  TCCCCAGAGGAAAGCAATTAAGGAAGACTCAGCCAATGTTGTTTTGTTTT  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCCCAGAGGAAAGCAATTAAGG-AGACTCAGCCAATGTTGTTTTGTTTT  357

seq1  GTGTT-ATACTGTATTGTGGATATTGTGTTGTTGTGTTGTGTTGTTGTGT  448
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTTAATACTGTA-TGTGGATATTGTGTTGTTGTGTTGTGTTGTTGTGT  406

seq1  TCTGTTCTTTATCTTCAAATTCATTCTGGTTTTTCAG-CCAAATGCTCCC  497
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTGTTCTTTATCTTCAAATTCATTCTGGTTTTTCAGCCCAAATGCTCCC  456

seq1  CAGGTTTCCACCTGGGTTTAGGGGTATTTGACGCACTCAATCCCAGTGCT  547
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  CAGGTTTCCACCTGGGTTTAGGGGTATTTGACGCACTCATCCCCAGTGCT  506

seq1  CTCTATCCTGAAAAAAATAGACCGAGAATGGCTGGGTGATTGCCCTTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCTGAAAAAAATAGACCGAGAATGGCTGGGTGATTGCCCTTCTC  556

seq1  CCTGTGTCAATCTAACCCATGGTTCTGTTTTCAGTCCTGAATCTGGTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCAATCTAACCCATGGTTCTGTTTTCAGTCCTGAATCTGGTCTA  606

seq1  ATCACAGACTCACTCTGCAGTAAATTAAATGAGACTTTTTTTTCCAGGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGACTCACTCTGCAGTAAATTAAATGAGACTTTTTTTTCCAGGTA  656

seq1  GGAATATTTATTTATTTATTTATTTATTTATTTATTTATTTAGATGAGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTATTTATTTATTTATTTATTTATTTATTTATTTAGATGAGAC  706

seq1  ATTTTCAAGTTCATTTCAAAAGATGTTGAACATCTCATAAAATGAGGCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGTTCATTTCAAAAGATGTTGAACATCTCATAAAATGAGGCTC  756

seq1  ATTACAGTGAAGAGGGATAAACCTGAAGAGTCAGAGTCACCAGAATGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGAAGAGGGATAAACCTGAAGAGTCAGAGTCACCAGAATGGCC  806

seq1  TATAAGAGCTATCCCAGGTCCTCCATACCTAGGTCCACTGTGGTTATTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGCTATCCCAGGTCCTCCATACCTAGGTCCACTGTGGTTATTTC  856

seq1  GTTGTCTCACAAGGAAGCTACAAGGCAAACTGGATACCTTCCCGTGTACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCACAAGGAAGCTACAAGGCAAACTGGATACCTTCCCGTGTACC  906

seq1  TTCCTCGTCCGTAAGCATCTAGCCTAAGTCTTCCTCGTCCGTAAGCATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGTCCGTAAGCATCTAGCCTAAGTCTTCCTCGTCCGTAAGCATCT  956

seq1  AGCCTAAGTCTTCCCGTCCCTGTATTGATTTCTTTTCGGTTGCTGAAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAGTCTTCCCGTCCCTGTATTGATTTCTTTTCGGTTGCTGAAGTA  1006

seq1  AATACCCTGATGAAGATGAAAAGAAGCTTAGGGGAGAAAGGGTCTGTCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTGATGAAGATGAAAAGAAGCTTAGGGGAGAAAGGGTCTGTCTA  1056

seq1  TTTCGGCTCACAGTTTCTGAGGGCTCAAGTCTAGGGAAGACATAGACTGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGCTCACAGTTTCTGAGGGCTCAAGTCTAGGGAAGACATAGACTGG  1106

seq1  TGAGAGGAACAGGACGCTGGCTGGTCACATCTCTTCTCTATATAGGAAGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAACAGGACGCTGGCTGGTCACATCTCTTCTCTATATAGGAAGC  1156

seq1  AGGGGTGGAGGGACTCCCAGAACTCAGCAAAGCTCTACCTCCAGAAGGTT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGAGGGACTCCCAGAACTCAGCAAAGCTCTACCTCCAGAAGGTT  1206

seq1  CCAGAATGTTCCTACCCGGAGACCAAGAATTC  1279
      ||||||||||||||||||||||||||||||||
seq2  CCAGAATGTTCCTACCCGGAGACCAAGAATTC  1238