BAC Information

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BAC

Clone NameB6Ng01-065G09
Chromosome3 (Build37)
Map Location 53,812,159 - 53,950,531
singlet/doubletdoublet
Overlap geneEG666444, LOC100039937
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
Downstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G09.bB6Ng01-065G09.g
ACCDH884885DH884886
length943952
definitionDH884885|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G09, 5' end.DH884886|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,812,159 - 53,812,766)(53,949,577 - 53,950,531)
sequence
gaattcttttctaaagcaaatatgcaaatttacttcattcttataacaaa
ctatgttgcattatgtcttacaaaaatattgatatttctgtgacacttac
cttttttggttttatatatttattttgacattaattttataaaatatttt
ttattaggtattttcctcatttacatttccaatgctataccaaaagtccc
ccataccctccccccacctcccctacacacccactcccactttttggccc
tggcgttcccctatactggagcatataaagtttgcaagtccaatgggcct
ctctttccagtgatggctgactaggccatcttttgatacatatgcagcta
gagtcaagagctctgaggtactggttagttcataatgttgttccaccttt
agggttgcagatccctttagctccttgggtactttctctagctcctccat
tggggtccctgtgattcatccaatagctgactgtgaacatccacttctgt
gtttgctaggccccggcatagtctcatgagagacagctatatctgggtcc
tttcagcaaaatcttgctagtgtatgcaatgatgtcagcgtttggaagct
gattatggggtggatccccagatatggcagtctctagatgtttcatcctt
tcatcacagctccaaacttttgtctttgtaactccttccatgggtgtttt
gttcccaatttctaagaaggggcaaagtgtccacactttggtcttcgttc
ttcttgattttcatgtgtttcgcaaattgtatcttatatcttgggtattc
taagtttctgggcttatacactatcagtgagtacatatcatatgagttct
ttgtgattgtgttacctcactcagatgatgccctccagacccatccattg
gctaggaatttcataaatcattcttttaatagctgagtagtac
gaattcacttgaattttgtttgtttgtttgtttgtctgtttgagacagga
tttctctgtatagccctggctgacctggaactcactttgtagaccaggct
ggcctcgaactcagaaatccgcctgcctctctaagtgctgggattaaagg
tgtgcaccaccactgccctgcagtggaatccatttgtttatttctaatcc
aaaagctgcagaatttctccttgacaattaagcatgctttcaaaggaggg
catcttcccaacacccaagggtgtcccaccccccccccccagggaatttt
tttttacctcaaatgaatgtctatttctcttttgaattgatcaaaatgat
gcttggtgattcccatctgtaatgaaggcatccgagttttcctaaccact
tcctgactttaaagctcaaaattttgtactctttaggctggagagatgtc
agggcctaagagtgcctactgctcttgcagaggaccttagttctcttcag
cacccattccaggaagctcacagttgcctacaactccagctcccgggagt
gcaacaccttctttatgcctttgcaagcatccacacaggaaactccaaag
tcctcaacaagtgtggatggctgatcaccttgcttctttgtcaagaagcc
caccctaaatgttactcttaatttcttttaaaatacctgtaatagcagca
gcttgggactctaactattcctataatataaagtcttccagttgtaaaga
ggacagagtagcaagttcaattcttagtctacagctcacaataaagaaaa
gaaaagatcttatggcaaaatgctatatttttaaaaacaacaaacatagc
aactcctcctacaatatgaaatcaacttttcttcatataaatcataaaaa
aaaaaccctgctttgatcgactagattatgaaacatgcagatttggcagg
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53812159_53812766
seq2: B6Ng01-065G09.b_43_650

seq1  GAATTCTTTTCTAAAGCAAATATGCAAATTTACTTCATTCTTATAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTAAAGCAAATATGCAAATTTACTTCATTCTTATAACAAA  50

seq1  CTATGTTGCATTATGTCTTACAAAAATATTGATATTTCTGTGACACTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGCATTATGTCTTACAAAAATATTGATATTTCTGTGACACTTAC  100

seq1  CTTTTTTGGTTTTATATATTTATTTTGACATTAATTTTATAAAATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGGTTTTATATATTTATTTTGACATTAATTTTATAAAATATTTT  150

seq1  TTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATACCAAAAGTCCC  200

seq1  CCATACCCTCCCCCCACCTCCCCTACACACCCACTCCCACTTTTTGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCTCCCCCCACCTCCCCTACACACCCACTCCCACTTTTTGGCCC  250

seq1  TGGCGTTCCCCTATACTGGAGCATATAAAGTTTGCAAGTCCAATGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTCCCCTATACTGGAGCATATAAAGTTTGCAAGTCCAATGGGCCT  300

seq1  CTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTA  350

seq1  GAGTCAAGAGCTCTGAGGTACTGGTTAGTTCATAATGTTGTTCCACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGAGCTCTGAGGTACTGGTTAGTTCATAATGTTGTTCCACCTTT  400

seq1  AGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCAT  450

seq1  TGGGGTCCCTGTGATTCATCCAATAGCTGACTGTGAACATCCACTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCCCTGTGATTCATCCAATAGCTGACTGTGAACATCCACTTCTGT  500

seq1  GTTTGCTAGGCCCCGGCATAGTCTCATGAGAGACAGCTATATCTGGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTAGGCCCCGGCATAGTCTCATGAGAGACAGCTATATCTGGGTCC  550

seq1  TTTCAGCAAAATCTTGCTAGTGTATGCAATGATGTCAGCGTTTGGAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAAATCTTGCTAGTGTATGCAATGATGTCAGCGTTTGGAAGCT  600

seq1  GATTATGG  608
      ||||||||
seq2  GATTATGG  608

seq1: chr3_53949577_53950531
seq2: B6Ng01-065G09.g_70_1021 (reverse)

seq1  TGCCTGCCAAATCTGCATGTTTCATATTCTAGTCGATCAAAGCAGGGTTT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCTGCCAAATCTGCATGTTTCATAATCTAGTCGATCAAAGCAGGGTTT  50

seq1  TTTTTTTATGATTTAATATGAAGAAAAGTTGAATTTCATATTGTAGGAGG  100
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TTTTTTTATGATTT-ATATGAAGAAAAGTTG-ATTTCATATTGTAGGAGG  98

seq1  AGTTGCTATGTTTGTTTGTTTTTAAAATTATAGCATTTTTGCCATAAGAT  150
      |||||||||||||| |||||||||||| ||||||| ||||||||||||||
seq2  AGTTGCTATGTTTG-TTGTTTTTAAAAATATAGCA-TTTTGCCATAAGAT  146

seq1  CTTTTCTTTTCTTTATTGTGAGCTGTAGACTAAGAATTGAACTTGCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTATTGTGAGCTGTAGACTAAGAATTGAACTTGCTACT  196

seq1  CTGTCCTC-TTACAACTGGAAGACTTTATATTATAGGAATAGTTAGAGTC  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTTTACAACTGGAAGACTTTATATTATAGGAATAGTTAGAGTC  246

seq1  CCAAGCTGCTGCTATTACAGGTATTTTAAAAGAAATTAAGAGTAACATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGCTGCTATTACAGGTATTTTAAAAGAAATTAAGAGTAACATTT  296

seq1  AGGGTGGGCTTCTTGACAAAGAAGCAAGGTGATCAGCCATCCACACTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGCTTCTTGACAAAGAAGCAAGGTGATCAGCCATCCACACTTGT  346

seq1  TGAGGACTTTGGAGTTTCCTGTGTGGATGCTTGCAAAGGCATAAAGAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTTTGGAGTTTCCTGTGTGGATGCTTGCAAAGGCATAAAGAAGG  396

seq1  TGTTGCACTCCCGGGAGCTGGAGTTGTAGGCAACTGTGAGCTTCCTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCACTCCCGGGAGCTGGAGTTGTAGGCAACTGTGAGCTTCCTGGAA  446

seq1  TGGGTGCTGAAGAGAACTAAGGTCCTCTGCAAGAGCAGTAGGCACTCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGAAGAGAACTAAGGTCCTCTGCAAGAGCAGTAGGCACTCTTA  496

seq1  GGCCCTGACATCTCTCCAGCCTAAAGAGTACAAAATTTTGAGCTTTAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGACATCTCTCCAGCCTAAAGAGTACAAAATTTTGAGCTTTAAAG  546

seq1  TCAGGAAGTGGTTAGGAAAACTCGGATGCCTTCATTACAGATGGGAATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGTGGTTAGGAAAACTCGGATGCCTTCATTACAGATGGGAATCA  596

seq1  CCAAGCATCATTTTGATCAATTCAAAAGAGAAATAGACATTCATTTGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATCATTTTGATCAATTCAAAAGAGAAATAGACATTCATTTGAGG  646

seq1  TAAAAAAAAATTCCCTGGGGGGGGGGGGTGGGACACCCTTGGGTGTTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATTCCCTGGGGGGGGGGGGTGGGACACCCTTGGGTGTTGGG  696

seq1  AAGATGCCCTCCTTTGAAAGCATGCTTAATTGTCAAGGAGAAATTCTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCCTCCTTTGAAAGCATGCTTAATTGTCAAGGAGAAATTCTGCA  746

seq1  GCTTTTGGATTAGAAATAAACAAATGGATTCCACTGCAGGGCAGTGGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGATTAGAAATAAACAAATGGATTCCACTGCAGGGCAGTGGTGG  796

seq1  TGCACACCTTTAATCCCAGCACTTAGAGAGGCAGGCGGATTTCTGAGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCTTTAATCCCAGCACTTAGAGAGGCAGGCGGATTTCTGAGTTC  846

seq1  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGTCAGCCAGGGCTATACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGTCAGCCAGGGCTATACA  896

seq1  GAGAAATCCTGTCTCAAACAGACAAACAAACAAACAAACAAAATTCAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCCTGTCTCAAACAGACAAACAAACAAACAAACAAAATTCAAGT  946

seq1  GAATTC  955
      ||||||
seq2  GAATTC  952