BAC Information

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BAC

Clone NameB6Ng01-065M03
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,151 - 41,059,728143,897,506 - 143,898,723
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065M03.bB6Ng01-065M03.g
ACCDH885141DH885142
length9781,200
definitionDH885141|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M03, 5' end.DH885142|Mus musculus domesticus DNA, BAC clone: B6Ng01-065M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,151 - 41,059,728)(143,897,506 - 143,898,723)
sequence
tttttttagctctgagccccattttttatggggttatttgattttctgga
gtccaccttcttgagttttttatatatattggatattagtcccctacctg
atttaggataggtaaagatcctttcccaatctgttggtggcctttttgtc
ttattgacaaaggtgtcttttgccttacagaagctttgcaattttatgag
gtcccatttgtttattctccatgttacggcacaagccattgctgttctat
tcaggaatgttttcccctgtgcccatatctttgagacttttccccacttt
ctcctctataagtttcactgactctggttttatgtggagttccttgatct
acttagatttgaccttagtacaaggagataggaatggatcaattcacatt
cttctacatgataacagccagttatgccagcaccatttgttgaaaatgct
gtctttttcccactgcatggttttagcttccttgtcaaagatcaagtgac
cataggtgtgtgggttaatttctgggtcttcaattctattccattggtct
acttgtctgccactataccagtatcatgcagtttttatcacaattgctct
gtagtacagctttaggtcaggcatggtgatttcccccagaggttctttta
tccttgagaagagtttttgctatcctaggttttttgttattccagatgaa
tttgcagattgcccttctaattcgttgaagaattgaggtggaattttgat
ggtgattgcattgaatctgtagattgcttttggcaagatagccatttttc
tatattgatcctgccaatccatgagcatgggtgatctttccatcttctga
gatcttctttactttctttcttcagagacttgaagttcttatcatacaga
tctttcacttccttagttagagtcatgccagatatttacattatttgtga
ctatttgagaaggtgttgtttcctaatt
gaattcttatgcactatgttaaataggcaaaaagatattgaacttctaag
ataatgcttaaagtacaagaaaattatgatttcactggatgaataaagaa
taaaaataggctctctgacacatcacagatcaatatttacactttatatg
tctaatttttcttaaatattgagtataaaaattaaagttttccccataaa
ttatgaatacccataagaaaaagattaattgccaatattaaatcttattt
ttttcatgctttttgtttttcttggttttgttaaattctccactaagtat
attctgtatttgtatataagtgagaaaaattatcactctctatgcaagaa
tctataggaagagaagctaagctaaaaaaggctatggatagctgctaatt
taattttgacgggatttcttcatatatctgataatatgttgagggaagat
tttaggtatcattgaaaactcacttatgaattaatgaaaatccattaaaa
ttttaattaattatttttaatttaagaataatactgcatctatctcatat
aacattgctctgtatgtgaagagctaaggggagatgaggtttatctgtgt
actcagcaagtccatgtgttcatataggcaggtttcttattttatttaag
aagatttgttctatgacaaacccagtctgcacgttgatccttctgatata
cctttttcttgcacagaaacttttctaaatttttggagttacaagtttaa
gtaactcataaaacaagaagagataaattctaagagaatgaacaattaca
ttaaagcatttttctaaatttgagggataaggagaattagacttttgtaa
aagtgaattgtgtctccccagtactcacacacacacacacacacacacac
acacacacacacacacatctgttaaagacagatcttgaaactatctcaaa
gtggtccactatctataagcagtatccagtgtctgattactgaataggca
gagttgactgtaatgatggaattattcaactccaggagaacaaaactcgt
ttcatttccttctattgacatagcgccaagagaaagagagacatggtggg
ggtgatcatcttcggtatctttctaaggtaggaacctgtatttgtattcc
ctattgcaaagagagaactttccagattcgccagccctttcctcttgtat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059151_41059728
seq2: B6Ng01-065M03.b_59_640 (reverse)

seq1  AAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATA  50
      |||||||||||| ||||||||||||| |||||||| ||||||||||||||
seq2  AAAAACTGCATGATACTGGTATAGTGGCAGACAAGTAGACCAATGGAATA  50

seq1  GAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTC  100
      ||||||||||| ||||||  || |||||||||||||||||||||||||| 
seq2  GAATTGAAGACCCAGAAATTAACCCACACACCTATGGTCACTTGATCTTT  100

seq1  GACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAA  150
      ||||||| |||||||||||| |||||| ||||||||||||||||||||||
seq2  GACAAGGAAGCTAAAACCATGCAGTGGGAAAAAGACAGCATTTTCAACAA  150

seq1  ATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATC  200
      |||||||||||| |||||| |||||||||||||||||||| |||||||||
seq2  ATGGTGCTGGCATAACTGGCTGTTATCATGTAGAAGAATGTGAATTGATC  200

seq1  CACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGC  250
      || ||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  CATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTAGATCAAGGAACTC  250

seq1  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  300
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  CACATAAAACCAGAGTCAGTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  300

seq1  CCTTGAAGATATGGTCACAGGGGAAAA-ATTCCTGCATAGAACAGCAATG  349
       ||  ||||||||| |||||||||||| ||||||| ||||||||||||||
seq2  TCTCAAAGATATGGGCACAGGGGAAAACATTCCTGAATAGAACAGCAATG  350

seq1  GCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCA  399
      |||||||| |||| || ||||||| |||||||||||||||| ||| ||||
seq2  GCTTGTGCCGTAACATGGAGAATAAACAAATGGGACCTCATAAAATTGCA  400

seq1  AAGCTTCTGCAAGGCAAAAGACACC---GTCAATAAGACAAAAAGG-CAC  445
      ||||||||| |||||||||||||||   |||||||||||||||||| |||
seq2  AAGCTTCTGTAAGGCAAAAGACACCTTTGTCAATAAGACAAAAAGGCCAC  450

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  495
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGGTAGGGGACTA  500

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  545
      ||||||||||||||| || |||||||||||||||| ||||||||||||||
seq2  ATATCCAATATATATAAAAAACTCAAGAAGGTGGACTCCAGAAAATCAAA  550

seq1  TAACCCCATTAAAAAATGGGGCTCAGAGCTAAA  578
      |||||||| ||||||||||||||||||||||||
seq2  TAACCCCA-TAAAAAATGGGGCTCAGAGCTAAA  582

seq1: chr1_143897506_143898723
seq2: B6Ng01-065M03.g_70_1269

seq1  GAATTCTTATGCACTATGTTAAATAGGCAAAAAGATATTGAACTTCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGCACTATGTTAAATAGGCAAAAAGATATTGAACTTCTAAG  50

seq1  ATAATGCTTAAAGTACAAGAAAATTATGATTTCACTGGATGAATAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTTAAAGTACAAGAAAATTATGATTTCACTGGATGAATAAAGAA  100

seq1  TAAAAATAGGCTCTCTGACACATCACAGATCAATATTTACACTTTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGGCTCTCTGACACATCACAGATCAATATTTACACTTTATATG  150

seq1  TCTAATTTTTCTTAAATATTGAGTATAAAAATTAAAGTTTTCCCCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTCTTAAATATTGAGTATAAAAATTAAAGTTTTCCCCATAAA  200

seq1  TTATGAATACCCATAAGAAAAAGATTAATTGCCAATATTAAATCTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATACCCATAAGAAAAAGATTAATTGCCAATATTAAATCTTATTT  250

seq1  TTTTCATGCTTTTTGTTTTTCTTGGTTTTGTTAAATTCTCCACTAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGCTTTTTGTTTTTCTTGGTTTTGTTAAATTCTCCACTAAGTAT  300

seq1  ATTCTGTATTTGTATATAAGTGAGAAAAATTATCACTCTCTATGCAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATTTGTATATAAGTGAGAAAAATTATCACTCTCTATGCAAGAA  350

seq1  TCTATAGGAAGAGAAGCTAAGCTAAAAAAGGCTATGGATAGCTGCTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGAAGAGAAGCTAAGCTAAAAAAGGCTATGGATAGCTGCTAATT  400

seq1  TAATTTTGACGGGATTTCTTCATATATCTGATAATATGTTGAGGGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGACGGGATTTCTTCATATATCTGATAATATGTTGAGGGAAGAT  450

seq1  TTTAGGTATCATTGAAAACTCACTTATGAATTAATGAAAATCCATTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATCATTGAAAACTCACTTATGAATTAATGAAAATCCATTAAAA  500

seq1  TTTTAATTAATTATTTTTAATTTAAGAATAATACTGCATCTATCTCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAATTATTTTTAATTTAAGAATAATACTGCATCTATCTCATAT  550

seq1  AACATTGCTCTGTATGTGAAGAGCTAAGGGGAGATGAGGTTTATCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCTCTGTATGTGAAGAGCTAAGGGGAGATGAGGTTTATCTGTGT  600

seq1  ACTCAGCAAGTCCATGTGTTCATATAGGCAGGTTTCTTATTTTATTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAGTCCATGTGTTCATATAGGCAGGTTTCTTATTTTATTTAAG  650

seq1  AAGATTTGTTCTATGACAAACCCAGTCTGCACGTTGATCCTTCTGATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGTTCTATGACAAACCCAGTCTGCACGTTGATCCTTCTGATATA  700

seq1  CCTTTTTCTTGCACAGAAACTTTTCTAAATTTTTGGAGTTACAAGTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTGCACAGAAACTTTTCTAAATTTTTGGAGTTACAAGTTTAA  750

seq1  GTAACTCATAAAACAAGAAGAGATAAATTCTAAGAGAATGAACAATTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCATAAAACAAGAAGAGATAAATTCTAAGAGAATGAACAATTACA  800

seq1  TTAAAGCATTTTTCTAAATTTGAGGGATAAGGAGAATTAGACTTTTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCATTTTTCTAAATTTGAGGGATAAGGAGAATTAGACTTTTGTAA  850

seq1  AAGGTGAAATTGTGTCTCCCCAGTACTCACACACACACACACACACACAC  900
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GTG-AATTGTGTCTCCCCAGTACTCACACACACACACACACACACAC  898

seq1  ACACACACACACACACACAATCTGTTAAAGACAGAATCTTGAAACTATCT  950
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  ACACACACACACACACAC-ATCTGTTAAAGACAG-ATCTTGAAACTATCT  946

seq1  CAAAGTGGT-CACTATCTATAAGCAGGTATCCAGGTGTTCTGATTACTGA  999
      ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||
seq2  CAAAGTGGTCCACTATCTATAAGCA-GTATCCA-GTG-TCTGATTACTGA  993

seq1  ATAGGCAGAGTTGACCTGTAATGATGGAATTATTCAAACTCCAGGAGAAC  1049
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  ATAGGCAGAGTTGA-CTGTAATGATGGAATTATTC-AACTCCAGGAGAAC  1041

seq1  AAAACTCGGTTTCCATTTCCTTCTATTGAACATAGCGTCAAAGAGAAAGA  1099
      ||||||||  || ||||||||||||||| |||||||| | ||||||||||
seq2  AAAACTCG--TTTCATTTCCTTCTATTG-ACATAGCG-CCAAGAGAAAGA  1087

seq1  G-GACATAGTGTGGTGTGATCATCTTCGTTAATCTTTCCTAGTGTGGGAA  1148
      | ||||| ||| || ||||||||||||| | |||||| |||  || ||||
seq2  GAGACATGGTG-GGGGTGATCATCTTCGGT-ATCTTT-CTAAGGTAGGAA  1134

seq1  ACACTGTATTTG-ATTTCTTATTGGCAGAAGAG-GTACTTTCAGGTTATC  1196
         ||||||||| ||| | |||| ||| ||||| | ||||||  | | ||
seq2  --CCTGTATTTGTATTCCCTATT-GCA-AAGAGAGAACTTTCCAGAT-TC  1179

seq1  AGCAGTCCTTTCCTCTTTGTAT  1218
        ||| ||||||||| ||||||
seq2  GCCAGCCCTTTCCTC-TTGTAT  1200