BAC Information

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BAC

Clone NameB6Ng01-065P14
Chromosome3 (Build37)
Map Location 118,365,021 - 118,515,721
singlet/doubletdoublet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065P14.bB6Ng01-065P14.g
ACCDH885293DH885294
length1,076911
definitionDH885293|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P14, 5' end.DH885294|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,365,021 - 118,366,106)(118,515,174 - 118,515,721)
sequence
gaattcaaaatcatttttagctacaatgattttgaagccaacctggacta
cataaggcactgcctaaaacataatgtaaacagtgctttatcattcagaa
tatacgtttacatacacaaataacttagtttaatcctcacagtgacagct
gtactcactcccatgttatgaggatatgcgtggccattgagggggtcact
catcttcacgcgagttcagaagcagtttagttacaaaaataaaactcaca
aacagatttaccatctgcaaagtttcaacctttcccattctatgatatta
ttacatttccctgtgactcaaaagattctccgagagagggcctgcttata
agctggccaccattagtgaaatgacattagctaaatatgattacctccta
atgtctcctgaaagaattagactagttaagacacactgaagggaaaagca
attatctattgaaatatgaatctctggatgagaactggaaatggtatctt
actatcaggatgttcatgtggaattttgaggaatctaaattgggtgatta
tgtcttggagtgtggtttacaacttcagtgtagaaagtccaaggaacaat
tagaaaagaacactattcaggaaaagaactttcccatagtcgattgatta
tatagaggaacctagaccttagaaattctgattccgccagaattggatct
acttatttttataaatgcatacatacatttataacaggttaacacaaccc
attatgttcactgccttaaagtatgttgttcttgcactgggcattcttgg
agcgagtcattttacttagattgttatcatagtttatggtaaagaatctg
atattacctcctcaggattgtttgtatgttcctgacagttctttaagtcc
cttgagcatagagggtgctgcagcatccatcttcccaacataggaattac
agacctattcctactctggcactgattttcttctctcacctgatgtgtgg
tgtccttatacatgtaatcatattgattgaattagtttacctctggtgag
tgcttcagccatactgaacacgatca
gaattcattgggaatgtgcatttccaaacgctgaaggcccttgtccccag
ttgggttttgatcaatcaataaagagccaaaggccaactgtctgggcagg
gagagaagggtggaacctttagatttgcactggataggaactgagaaaag
ggaagacagaattacatggtctcaggggagaaggatgggacttaagagct
gctgaagaaagagccaaccagccatgtaagaattcaggtaagtgaccact
ggtcacttccctgattgggcttggggtagcagggaaggtttggagtctca
gaagaacccgaggagagtactgtactagcaggggaagattgaggagtgcc
caacctttgaactagtcatggcaagtcaaaaattggcatgtgagtgtgaa
tgtgtgtgtgtgtgtgtgtgtgtgcatgcgtacctttcatttgtgaatcc
agattgtgcctgggtgggtatacacttgtgagccttcaggaggaaaaaca
gtgtaccccaataccactacagatgggtttatttgttctaggatattcta
gaacagtgaaagtttatcttttatgtcttctctagaaaactcaacggtga
atttttagtgttatttgatattatcaaaaagacataatttcttctctaaa
tcttccactttatcatgagccaagaattttatgaacatcaagagggcgga
gagcatcagaagctcttacagatccaaatatttatgggatcataggattt
tattgatatatttgctatgtctcaattctcagtaaagtatgaagttacaa
aacgggtctaaatcaaaatatctttgaaagaaaaacctaagaagaataat
cagatatctccccttcccattactagttatagactggtactaccgtccaa
tggaaaatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118365021_118366106
seq2: B6Ng01-065P14.b_45_1120

seq1  GAATTCAAAATCATTTTTAGCTACAATGATTTTGAAGCCAACCTGGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCATTTTTAGCTACAATGATTTTGAAGCCAACCTGGACTA  50

seq1  CATAAGGCACTGCCTAAAACATAATGTAAACAGTGCTTTATCATTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGCACTGCCTAAAACATAATGTAAACAGTGCTTTATCATTCAGAA  100

seq1  TATACGTTTACATACACAAATAACTTAGTTTAATCCTCACAGTGACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTTTACATACACAAATAACTTAGTTTAATCCTCACAGTGACAGCT  150

seq1  GTACTCACTCCCATGTTATGAGGATATGCGTGGCCATTGAGGGGGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACTCCCATGTTATGAGGATATGCGTGGCCATTGAGGGGGTCACT  200

seq1  CATCTTCACGCGAGTTCAGAAGCAGTTTAGTTACAAAAATAAAACTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCACGCGAGTTCAGAAGCAGTTTAGTTACAAAAATAAAACTCACA  250

seq1  AACAGATTTACCATCTGCAAAGTTTCAACCTTTCCCATTCTATGATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTTACCATCTGCAAAGTTTCAACCTTTCCCATTCTATGATATTA  300

seq1  TTACATTTCCCTGTGACTCAAAAGATTCTCCGAGAGAGGGCCTGCTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCCCTGTGACTCAAAAGATTCTCCGAGAGAGGGCCTGCTTATA  350

seq1  AGCTGGCCACCATTAGTGAAATGACATTAGCTAAATATGATTACCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCACCATTAGTGAAATGACATTAGCTAAATATGATTACCTCCTA  400

seq1  ATGTCTCCTGAAAGAATTAGACTAGTTAAGACACACTGAAGGGAAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCTGAAAGAATTAGACTAGTTAAGACACACTGAAGGGAAAAGCA  450

seq1  ATTATCTATTGAAATATGAATCTCTGGATGAGAACTGGAAATGGTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTATTGAAATATGAATCTCTGGATGAGAACTGGAAATGGTATCTT  500

seq1  ACTATCAGGATGTTCATGTGGAATTTTGAGGAATCTAAATTGGGTGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAGGATGTTCATGTGGAATTTTGAGGAATCTAAATTGGGTGATTA  550

seq1  TGTCTTGGAGTGTGGTTTACAACTTCAGTGTAGAAAGTCCAAGGAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGAGTGTGGTTTACAACTTCAGTGTAGAAAGTCCAAGGAACAAT  600

seq1  TAGAAAAGAACACTATTCAGGAAAAGAACTTTCCCATAGTCGATTGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGAACACTATTCAGGAAAAGAACTTTCCCATAGTCGATTGATTA  650

seq1  TATAGAGGAACCTAGACCTTAGAAATTCTGATTCCGCCAGAATTGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGAACCTAGACCTTAGAAATTCTGATTCCGCCAGAATTGGATCT  700

seq1  ACTTATTTTTATAAATGCATACATACATTTATAACAGGTTAACACAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTTATAAATGCATACATACATTTATAACAGGTTAACACAACCC  750

seq1  ATTATGTTCACTGCCTTAAAGTATGTTGTTCTTGCACTGGGCATTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTCACTGCCTTAAAGTATGTTGTTCTTGCACTGGGCATTCTTGG  800

seq1  AGCGAGTCATTTTACTTAGATTGTTATCATAGTTTATGGTAAAGAATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGTCATTTTACTTAGATTGTTATCATAGTTTATGGTAAAGAATCTG  850

seq1  ATATTACCTCCTCAGGATTGTTTGTATTGTTCCTGACAGTTTCTTTAAGG  900
      |||||||||||||||||||||||||| |||||||||||| |||||||| |
seq2  ATATTACCTCCTCAGGATTGTTTGTA-TGTTCCTGACAG-TTCTTTAA-G  897

seq1  TCCCTTGAGCATAGAGGGTGCTGCAGGCATCCATCTTCCCAACATAGGAA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCCTTGAGCATAGAGGGTGCTGCA-GCATCCATCTTCCCAACATAGGAA  946

seq1  TTACAAGACCTATTCCTACTCTTGGCAACTGATTTTTCTTCTCTCACCTG  1000
      |||| |||||||||||||||| |||| ||||| |||||||||||||||||
seq2  TTAC-AGACCTATTCCTACTC-TGGC-ACTGA-TTTTCTTCTCTCACCTG  992

seq1  ATGTGTGGTGTCCTTATACCATGT-ATCATATTTGATTGAATTAGTTTAC  1049
      |||||||||||||||||| ||||| |||||| ||||||||||||||||||
seq2  ATGTGTGGTGTCCTTATA-CATGTAATCATA-TTGATTGAATTAGTTTAC  1040

seq1  CTCT-GTGAGTGCTTCAGGCAATACTGAAACACGATCA  1086
      |||| |||||||||||| || |||||| ||||||||||
seq2  CTCTGGTGAGTGCTTCA-GCCATACTG-AACACGATCA  1076

seq1: chr3_118515174_118515721
seq2: B6Ng01-065P14.g_429_981 (reverse)

seq1  ATCATTTT-CATT-GACTGTAGTTACCAGTCTATATACTAGTAATGGGAA  48
      |||||||| |||| ||| |||| |||||||||||| ||||||||||||||
seq2  ATCATTTTCCATTGGACGGTAG-TACCAGTCTATA-ACTAGTAATGGGAA  48

seq1  GGGGAGAATATCTGA-TATTCTTCTTAGGTTTTTCTTTCAAAGATATTTT  97
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGGAG-ATATCTGATTATTCTTCTTAGGTTTTTCTTTCAAAGATATTTT  97

seq1  GATTTAGACCTGTTTTGTAACTTCATACTTTTACTGAGAATTGAGACATA  147
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  GATTTAGACCCGTTTTGTAACTTCATAC-TTTACTGAGAATTGAGACATA  146

seq1  GCAAATATATCAATAAAATCCTATGATCCCATAAATATTTGGATCTGTAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATATCAATAAAATCCTATGATCCCATAAATATTTGGATCTGTAA  196

seq1  GAGCTTCTGATGCTCTCCG-CCTCTTGATGTTCAT-AAATTCTTGGCTCA  245
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GAGCTTCTGATGCTCTCCGCCCTCTTGATGTTCATAAAATTCTTGGCTCA  246

seq1  TGAT-AAGTGGAAGATTTAGAGAAG-AATTATGTC-TTTTGATAATATCA  292
      |||| |||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TGATAAAGTGGAAGATTTAGAGAAGAAATTATGTCTTTTTGATAATATCA  296

seq1  AATAACACT-AAAATTCACCGTTGAGTTTTCTAGAGAAGACATAAAAGAT  341
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACTAAAAATTCACCGTTGAGTTTTCTAGAGAAGACATAAAAGAT  346

seq1  AAACTTTCACTGTTCTAGAATATCCTAGAACAAATAAACCCATCTGTAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCACTGTTCTAGAATATCCTAGAACAAATAAACCCATCTGTAGT  396

seq1  GGTATTGGGGTACACTGTTTTTCCTCCTGAAGGCTCACAAGTGTATACCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGGGTACACTGTTTTTCCTCCTGAAGGCTCACAAGTGTATACCC  446

seq1  ACCCAGGCACAATCTGGATTCACAAATGAAAGGTACGCATGCACACACAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCACAATCTGGATTCACAAATGAAAGGTACGCATGCACACACAC  496

seq1  ACACACACACACACATTCACACTCACATGCCAATTTTTGACTTGCCATGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATTCACACTCACATGCCAATTTTTGACTTGCCATGA  546

seq1  CTAGTTC  548
      |||||||
seq2  CTAGTTC  553